Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  ------>MYB83                                       <---------WOX13(1)                                     --------->ATHB12                               --------->ARR11(3)                               <---------ARR11(3)                        --------->YAB1                               <---------GLK1(2)------>MYB46(1)         <---------YAB1      <--------                             <---------TOE2(3)<---------MYB59         --------->YAB1        <--------                  <---------TOE2(3) <---------YAB1      >>>>>>>>>>>>>>>>>LFY       ----------->GT1   agctaattatctacaaaattgatgttgtcttaagatttttgattgggacctaatattgctccattgtatcaagaattatagaatattgtaaaataaggtt  599100                       <---------ICU4                       --------->ATHB51                       <--------HAHB4                       --------->YAB1                                  --------->TOE2(2)        ------>ZmHOX2a(2)                                     --------->AHL20(2)       <------ZmHOX2a(2)                                      <---------AHL20(2)      <---------ARR11(3)                                     --------->AHL20(2)       <---------GLK1(2)      --------->ARR11(3)                                 <---------AHL20(2)           --------->ARR14(2)      --------->AGP1  <---------YAB1                     --------->AHL20(2)       --------->YAB1      --------->ARR14(2)                            ------->GAMYB      --------->TOE2(3)      <---------ARR14(2)                          -------->P <---------AHL20(2)--------->WOX13(1)    ----------->ARR10 --------->ICU4              ------>MYB46(1)      --------->TOE1(2) -TOE1(3)       <---------WOX13(1)                ------>MYB83--------->AHL20(1)  <---------ICU4----- -TOE2(3)    <---------YAB1                    ------>ZmHOX2a(2)     ------->TEIL<---------ATHB12 <--   ttgcattagatccttgtaattgccataattatctaacaaaactcgatgatccaacccaaaaaattaaattgaacctaagattaatcaatattctccaata  599200                                                   ------>NtERF2         --------->ANAC46                                               <-----------GT1           --------->ANAC58       <-------MYC3                        <----------DOF2               --------->ANAC58       ------->MYC3                 --------------->AtSPL8               --------->ANAC55(1)     ----  <-----------GT1       <---------YAB1     <---------DAG2              <---------ALFIN1     <-------- ---->YAB1    <---------DAG2<-------TEIL  <---------DAG2    --------->YAB1    <------NtERF2 --------- -------ZAT6  <----------DOF2       <-------TEIL  <---------ALFIN1  <------ZmHOX2a(1)       <--------   gtattaacacatggaacttttttcttatgatacatatatacatacctttttgccaccttcaattagaagaggaacacggcagagagagaaacagagctcc  599300                                                       <---------HSFC1(2)                                                       --------->HSFB2a(1)                                                   --------->ANAC58       --------->ANAC58                       <---------LBD16       --------->ANAC58                       --------->At4g35610      --------->MYB52(1)   --------->HSFB2a(2)                 --------->KAN4(1)           --------->ANAC58   <---------HSFB2a(2)                 <---------KAN4(1)           --------->ANAC46 -->ZmHOX2a(1)                      <------ZmHOX2a(1)  <---------HSFB2a(1)  <---------ARR14(2) -At4g35610            <---------HSFB2a(2)    <---------At4g35610 --------->SPL7 >GLK1(1)             <---------LBD16 <---------KAN4(2)--------->HSFC1(2)   --------->ARR14(2) -GLK1(1)      --------->ANAC46    ----------->GT1 --------->ANAC58--------->ANAC58               <--   ttcttcgacaagaaaactcgcgactcgggaaccagagaggaataatccagcggaagaaacttctcccatacgctatcggattggactgccgattcaaagg  599400                               --------->ALFIN1                             <---------ANAC46                              --------->ANAC58   <------                         ------->TEIL----------->GT1                       --------->ANAC46 ------>NtERF2                      <---------ANAC55(2)                              ------>NtERF2      --------->RAP2.6(3)                      --------->ANAC58                       <-------TEIL  --------->ANAC58<---------RAP2.6(2)                      --------->ANAC58                    --------->At4g35610      --------->MYB52(1)                      --------->ANAC55(1)         <---------AHL20(2)   --------->LBD16    --------->ATERF1(1)                      --------->ANAC55(2)         <---------AHL20(1)  <---------ETT(1)   <---------ATERF1(1)                      --------->ANAC46   ---------->DOF2  <---------At4g35610    --------->MYB46(3)           --------->At4g35610--------->LBD16    --------->AHL20(2)   --------->ANAC46  ----------->HVH21 --------DOF2 --------->At4g35610 <---------ANAC46--------->AHL20(1) <---------LBD16   <-----------HVH21   ctttcgaaaccgaagcagcaaaacacgcatcccgtggagtagtaaaagagattatattggagatgcaattctccggcaagccatcaaacggtgacggcct  599500                >>>>>>>>>>>>>>>>>LFY                ------>NtERF2      ------>ZmHOX2a(2)     <------ZmHOX2a(2)                                                             <-------TEIL    <---------ARR11(3)                                                        <-----------TBP    --------->ARR11(3)                                                    <---------ANAC46  --------->HSFB2a(1)      <---------DAG2     ------>MYB83               <------NtERF2  <---------HSFB2a(1)    ------>NtERF2        ------>MYB46(1)       <---------TOE2(3) <---------KAN4(2)      *TSS<----------DOF2 <---------MYB59         <---------TOE1(3) ---ANAC46     --------->ANAC46     <------------CBF   <----------DOF2 --------->ALFIN1         <----   gggaacgatctctccttgcgccattggtgcctttttcaaattgtgacctaatagtctctttctagtttctaaggtggcctatatatacattcaagggtct  599600                         <------NtERF2                       --------->ANAC46           ---------->ID1                      <---------LBD16         --------->ANAC55(2)                     --------->ANAC46         <---------ANAC58                     --------->O2             <---------ANAC46                     <---------O2             <---------ANAC55(2)                            <-------                   <---------DOF5.7(2)        <---------ANAC58                             <---------                  <-------TEIL                <---------ANAC55(1)                         <---------ANAC58                 <-----------HVH21          <-----------GT1                        <---------YAB1 <----------DOF2 --------->DOF5.7(2)        <---------AHL20(2)         --------->TOE2(3)  <---------ANAC58 ------DOF2     --------->TOE1(3)   <-----------GT1       <---------TOE2(3)      <-----------GT1   tttcttttatgtgttcaacgttcacgcggcaagtgttttaactaaattacttgttgttttaagttttaaaaaaccctagtatattactcttggctttggt  599700                           --------->WRKY18(1)                         ----------->GT1                     <---------AHL20(2)     <---------ARR11(3)                    --------->AHL20(2)      --------->ARR11(3)                                     <-                    <---------AHL20(2)  ---------->DOF2                                       <------               <<<<<<<<<MYB98   --------->YAB1                                    --------->AHL20(2) --AtMYB61    ----------->GT1  <---------ATHB12    <---------AHL20(2)     <---------AHL20(2)--------- -DOF2       ----------->GT1 --------->WOX13(1)   --------->AHL20(2)  <----------DOF2       <--------   ttgcaaattgaacatatgttaaataaatggtcaatcatataaaaaaggtctataaaatagacaattggctctctttttattttttaaaatagtcacatga  599800                                                                     <---------YAB1                                                                   --------->YAB1                                                                  <---------YAB1                                                          --------->TGA1a                                                          <---------O2  <---------WOX13(1)     ------                        <-------TEIL                      <---------TGA1a                <---------AHL20(2)                      <-------MYC3                        <---------ANAC46               --------->AHL20(2)  <---------YAB1      ------->MYC3      <---------ALFIN1  <---------ANAC58              <---------AHL20(2) --------TOE2(3)      <-------MYC2     --------->ZAT2     <---------ANAC55(2)           --------->AHL20(2) ---YAB1              ------->MYC4     <---------At4g35610<---------bZIP60(2)       <---------AHL20(2) >ANAC55(2)           ------->MYC2     <---------ZAT2     <---------ANAC58          --------->AHL20(2) -ANAC55(2)  <---------AtLEC2      ------>ZmHOX2a(1)    <------ZmHOX2a(1)       --------->AHL20(2)   taagattatagttttggatggacatgtgcatcatctcctccagcacaggtatagagcaggacgtgtctatgatgaatgacatatatataatttaatcagt  599900          ------>MYB83                               --------->ATHB12          ------>MYB46(1)                            <---------ICU4         ----------->RAV1(1)                         --------->ATHB51         --------->MYB52(1)                          <--------ATHB1        <---------MYB55(2)                          --------->ICU4                              <----        --------->AtMYB61          --------->TOE2(3)<---------YAB1                           <-------        --------->MYB46(3)         --------->YAB1 --------->YAB1                   --------->AHL20(2)       --------->MYB46(3)       <-----------GT1 <---------TOE2(3)                  <---------AHL20(2)    --------->MYB46(3)  <---------MYB52(1)<---------YAB1                     <------ZmHOX2a(1) ------ --->At4g35610     --------->MYB52(1)   ----------->GT1               --------->ZAT14     <----------DOF2   tgtatcaccaccaacagtattcaacggtttgttttaaccatattgttattaagaataattggatttgaaaactatactaggatatataatttctttcagg  600000  Previous    Next  AGI:  At2g02270.1    Description:  pseudogene, F-box protein (SKP1 interacting partner 3-related), contains similarity to SKP1 interacting partner 3 GI:10716951 from (Arabidopsis thaliana); blastp match of 37% identity and 4.7e-33 P-value to GP|28812128|dbj|BAC64996.1||AP004461 P0443G08.20 {Oryza sativa (japonica cultivar-group)} Range:  from: 598111    to: 599524    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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