Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------MYB52(2)     <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------->At4g35610 --------ARR11(3)                  <---------TOE2(3)                                             xxxx --->YAB1                       <---------YAB1             <----------DOF2                 <xxxxxxxxx ----ICU4<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        ---------->DOF2                ----------->HVH21 ---ATHB12     <---------YAB1 <---------MYB46(3) <----------DOF2            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ttatctgccactaacttatgcttcttaaacgattgttaatgaagtaaaccccttttaaaagcttttaaaatcccttgtaaattatctatgacacttactt  581600                                                                        <---------TOE2(3)                                             ----------->GT1      --------->AHL20(2)                                xxxxxxxxxxxxxxxx>smallRNA(le3)   <---------MYB52(1)                               <---------MYB52(1)               --------->At5g28300                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <-------GAMYB                      --------->ANAC58     <---------ANAC58    ----------->GT1                      --------->ANAC58     <---------ANAC58 ----------->RAV1(1)                      --------->ANAC46     <---------ANAC46----------->HVH21          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             --------->ANAC46<----------DOF2          < xxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->AtLEC2  <---------ICU4<---------AHL20(2)   ----------->GT1 xxxxxxxxxxxxxxsmallRNA(le3)   --------->ARR14(2)  <---------ATHB12     <---------TOE1(3)      <-----   atgttttaaaaacgattgtaaactacgcaaacagttatgcaaatgccttgtaaatcattctacgacagttaattaagctttaaaaacgattgtaaaactt  581700                                                                                             --------                                                                                             --------                                                                                             <-------                                                 --------->GLK1(2)                      <xxxxxxxxxxxx                                         <------MYB46(1)                               xxxxxxxxxxxxxx                                         <------MYB83                                <-----------GT1                                        <---------AtMYB61                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                      --------->ARR14(2)                    <----------DOF2 <--------                                      <---------ARR14(2)                    ------>ZmHOX2a(1)<-------  --------->ANAC55(2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------ANAC55(2)            --------->MYB52(1)            ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx -----------GT1                 <---------ARR14(2)    --------->ZAT6       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -----DOF2    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<-----------ARR10        ------>ZmHOX2a(2) xxxxxxxxx   tattacctgttgtgagatagaactctctcaaggagaaacggataggttgagaatcaactctaaaccaaagagttgatccttttgttttcactctctgctg  581800                          <---------ARR11(3)                          --------->GLK1(2)                          <-----------ARR10                    --------->HSFC1(1)                    <---------HSFB2a(2) ->At4g35610        --------->HSFB2a(2)                                                ------->TEIL ->ZAT2      --------->ARR11(3)                                                     <---------MYB52(2) --ZAT2<---------ZAT6--------->LBD16                                              --------->MYB52(1) xxxxxxxxxxxsmallRNA(fl3) --------->ARR11(3)                                   --------->ANAC58 xx>smallRNA(s)     <---------HSFC1(1)                                         --------->ANAC58 ---RAV1(1)  <---------ARR11(3)                                                --------->ANAC46 --At4g35610 <---------GLK1(2)                                            <------ZmHOX2a(1) >smallRNA(le3)    <---------LBD16                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)- xxxxxxxxxxxxx>smallRNA(si3)                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  ---   catgagatagtgaaagatttttccagaaaatctaattcccttcttagccttcatttttagtcccaattcaactagaggaccaagaaacgaacttctaatc  581900                                                                                     <---------GLK1(2)                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                              --------->ZAT14                                                                              <---------ZAT18                                                                              <---------ZAT14                                                                              --------->ZAT18     <--                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                <---------DAG2                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <xxxxxxxxxxxxxxxxsmallRNA(i)                <---------YAB1xxxxxxxxxxxxxxxx>smallRNA(s)         --------->ZAT6         <----------DOF2       --------->LBD16  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <-----------GT1     ------>ZmHOX2a(1)      <---------ARR14(2)  <---------ARR14(2)   <---------ALFIN1 -------->HSFB2a(2)      <xxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxx ------>At4g35610 ---------->DOF2                 --------->ARR14(2)  --------->ARR14(2)  ------>ZmHOX2a(1)   ttctgaaattaacactcgcctaaagcttcctctactttactaactaaattccaatccgagtattgttgaacggttcccagtgcaatagattcctcacctt  582000                                                                             ------>ZmHOX2a(2)                                                                            <------ZmHOX2a(2)                                                                           --------->ARR14(2)                                                                           --------->AGP1                                                                           --------->ARR11(3)                                                                           <---------ARR11(3)                                                                           <---------AGP1                                                                          <---------CCA1(2)                           --------->GLK1(1)                              --------->At4g35610              --------->ANAC46                                        <-----------TGA1           <---              --------->ANAC58                   *TSS        <---------YAB1<---------ARR14(2)   -----     <---------ARR14(2)    <---------GLK1(1)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------AHL20(2) xxsmallRNA(le3)         <------ZmHOX2a(1)   <---------At4g35610      <-----------HVH21<------------CBF x>smallRNA(fl3)       <---------TOE2(3)     --------->At4g35610  <xxxxxxxxxxxxxxxxsmallRNA(i) ------ --------DOF2 --------->ANAC58               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->AHL20(2) xxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ----------->TBP   ctttgtagatttgttcaggcaatataaggatttcgctctctgaatccatctgcaaaacatgttatgaaacagcgtcagatctactataaaattgactata  582100                            ------>ZmHOX2a(2)                           <------ZmHOX2a(2)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       xxxxxxxxxxxxxxx                          <---------AGP1                                              xxxxxxxxxxxxxxx                          --------->GLK1(2)                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                          --------->ARR11(3)                                       --------->At4g35610                          <---------ARR11(3)                                       <---------At4g35610                          <---------ARR14(2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          --------->ARR14(2)      <---------ANAC58             <xxxxxxxxxxxxxxxxsmallRNA(s)                          <-----------ARR10       <---------ANAC58             <-----------HVH21                          <---------ARR11(1)  <------------CBF       --------->ARR11(3)                         <---------ARR14(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxx                         <---------CCA1(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)------>ZmHOX2a(1)                    --------->ATERF1(2)    xxxxxxxxxxxxxxxx>smallRNA(s)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <---------ATERF1(2)   --------->LBD16<---------ANAC46  --------->ARR14(2)                   --------->DEAR3(2)   xxxxxxxxxxxxxxxx>smallRNA(i) <---------ARR11(3)           ------------>MYB.PH3(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <---------ARR14(2)        --------->YAB1   <------NtERF2  <---------LBD16 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------       ----------->TBP<---------LBD16xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxx>smallRNA(s)       <---------YAB1--------->LBD16--------->ARR11(3)<---------ANAC46 ===============HOX2a_HOX2a     --------->YAB1<---------LBD16 <---------GLK1(1)  <---------ANAC58 ------>ZmHOX2a(2)xxxxxxxxxxxxx ------AHL20(2)   --------->MYB52(1)<---------ARR11(3)<---------ANAC58--------->At4g35610xxxxxxxxxxxx ---->AHL20(2) <-----------HVH21   <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxsmallRNA(i) ----->TBP --------->MYB52(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxxxxxxsmallRNA(i)   aaatcgattataaaaacggttaccggcggatctatcgatatctctggggattgtttgcgtcgtagagaaatgatctgaatccttcagcgaagaacaggtt  582200                                                     xxxxxxxxxxxxxxxx>smallRNA(i)                                                    ------>NtERF2                                                   <---------DEAR3(1)                                                   <---------At1g77200                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                 <-----------HVH21                <-------TEIL                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)xxxxxxxxxxxxxxxxxx                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)    <------NtERF2                                               <-------TEIL <---------YAB1      <xxxxxxxxxxxxxxxxsmallRNA(s)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------DEAR3(1)                                            <---------HSFB2a(1)                 <xxxxxxxxxxxxxxxxxxxx                <---------DEAR3(1)          <---------HSFC1(2)                  <xxxxxxxxxxxxxxxxxxxx       <------ZmHOX2a(1)                    --------->HSFB2a(1)<xxxxxxxxxxxxxxxxsmallRNA(i)       <xx      ----------->GT1 <----------DOF2       --------->HSFC1(2)<---------ANAC46 <---------GLK1(1) <--- x>smallRNA(i) <---------At4g35610         xxxxxxxxxxxxxxxx>smallRNA(i)       <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxx>smallRNA(se3)                 ----------->GT1 xxxxxxxxxxxxxxxx>smallRNA(s) <---------MYB52(1) xxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<---------RAP2.3(1) xxxxxxxxxxxxxxxx>smallRNA(i) --->GT1    <-------TEIL              ---------->DOF2<------NtERF2 XXXXXXXXXXXXXXXXXXXXX>MIR2933A/B xxxxxxxxxx>smallRNA(fl3)             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <------ZmHOX2a(1) <----- xxxxxxxxx>smallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   ----------->GT1xxxxxxxxxx   tatcggagaggaaattcatcggcgattttggggtttctcagaaagaaaattcgtcggcgattttgagtgaaatcggagaggaaattcgttggcgattttg  582300                                                          <------NtERF2                                                         --------->LBD16                                                         ------>NtERF2                                                         <---------ATERF1(1)                                                        <---------DEAR3(1)                                                  --------->ARR14(2)                              <---------YAB1      <---------ARR14(2)                       <------NtERF2             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       xxxxxxxxxxxxxxxx>smallRNA(i)     --------->DEAR3(1)                      <---------RAP2.3(1)        <---------GLK1(1)  <xxxxxxxxxxxxxxxxsmallRNA(i)                      ------>NtERF2            <------ZmHOX2a(1)   <---------ANAC46                     <---------DEAR3(1)       ----------->GT1      <---------ANAC58                   xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(s)               --------->GLK1(1)<---------ANAC46----------->ARR10  <---------ANAC58               <---------ARR14(2)<xxxxxxxxxxxxxxxxsmallRNA(i)      ----------->GT1    XXXXXXXXXXXXXXXXXXXXX>MIR2933A/B        <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxx>smallRNA(le3) <---------At1g77200  xxxxxxxxxxxxxxxx>smallRNA(i)                         xxxxxx xxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   --------->ATERF1(2)                    <----- xxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  <---------ATERF1(2)               <---------- xxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(s) <---------LBD16                --------->GLK1(2) ------ANAC46  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->ATERF1(1)       ----------->GT1    < ----YAB1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxx xxxxxx>smallRNA(s)<-----------HVH21   XXXXXXXXXXXXXXXXXXXXX>MIR2933A/B        --------->At4g35610xxx   agtgaaatcggagagggaattcgtcggcgattttgagtgaaatcggagaggaaattcgccggcgagattgagtgaaatcggagatgaaaatcggagagga  582400                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                 <---------ICU4 <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                --------->ICU4 <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                <---------ATHB12xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              ------>MYB83----------->GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                              ------>MYB46(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                            --------->TOE2(3) --------->ANAC58                                            <---------MYB59<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                           xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                    --------->O2<xxxxxxxxxxxxxxxxsmallRNA(i)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                   ------>MYB83 <---------YAB1--------->ANAC58     xxxxxxxxxxxxxxxxxx                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   ------>MYB46(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                  --------->MYB52(1)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                 --------->TOE2(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <------- xxxxxxxxxxxxxxxxx>smallRNA(se3)<---------MYB52(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <--------P -ZmHOX2a(1)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -----------WRI1              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----------ID1 <---------ANAC46xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxsmallRNA(i)        ----------->GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxx>smallRNA(si3)--------->MYB46(3)--------->WOX13(1) <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)   aaacgaagaagtttgtgccgaagaagtttgtgaaaccaacgtgaaacctaatcattcagagggtaagacagtcatttggcatattagaaggggtagtttt  582500  Previous    Next  AGI:  At2g02210.1    Description:  transposable element gene. pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At1g32840, At4g04010, At2g06430, At2g15140, At2g04980, At2g14130, At3g44500, At2g15190, At3g47260, At5g34900, At3g29210, At3g32900 Range:  from: 577380    to: 582049    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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