Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <----------DOF2      --------->DAG2                                                      <---------ALFIN1     ---------->DOF2                                                      --------->ANAC46 ----->ZmHOX2a(2)                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------DAG2 ------->CCA1(2)                          <---------At4g35610             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -----ZmHOX2a(2)            --------->ANAC46                       <----------DOF2 -------AGP1                <---------ALFIN1<----------DOF2     --------->ARR11(3) ------>ARR11(3)<---------ANAC58      <-----------GT1           <---------ARR11(3)   <----------DOF2 -------ARR11(3)<---------ANAC58  <----------DOF2          <---------YAB1--------->MYB46(3) ------>AGP1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  ---------->DOF2   <-----------GT1      <--------   gatctaaaaaagtcatttccttgttaatccacacatcttttttctgctttcccttcaaagtctgattatcttttatccaccgcttttctttcttcttttc  574000                               --------->ATHB12                                       <xxxxxxxxxxxxxx                   ------>ZmHOX2a(1)                                               <-------TEIL                 ----------->RAV1(2)                --------->YAB1               xxxxxxxxxxxxxxxxxxxx             <---------At4g35610                   <---------YAB1       --------->GLK1(2) --DOF2      --------->At4g35610           ------>ZmHOX2a(1)           <---------GLK1(2)          ---   tcttcacatttggactgcttcctgatgcatcatccattggaagtcctgttgttatgataaactctctcagggagaatcgcataggttgatcagcaaatac  574100                    <--------P                   <-------GAMYB                  <------MYB83                  <---------MYB46(3)                                                              <--             <---------YAB1                               <---------ANAC58                     <xxxxx         <-----------TGA1                     <---------YAB1                             ------------ --------->TOE2(3)--------->MYB55(2)        --------->YAB1<---------ANAC46               <----------- xxxxxxxxxsmallRNA(si3)                    --------->ICU4 <---------ANAC58            --------->GLK1(1) xxx>smallRNA(i2) <------MYB46(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------At4g35610 ------>ANAC46<-----------RAV1(1)<---------LBD16     --------->CCA1(2)    <-------TEIL<---------ARR14(2)   aaaccacaattcgtcattgttggttagtattcttctctggagtaaatgatgaacgatatggcttgaaaatgctaagttcatttcagcgaattccactata  574200                                                    ------>ZmHOX2a(1)       --------->GLK1(2)     --------->ZAT6         ----------->HVH21               <----------DOF2 ----ZmHOX2a(1)            <xxxxxxxxxxxxxxxxsmallRNA(i)                         ------->TEIL xxxxxxxxxxxxxxxxxxsmallRNA(si3)               <----------DOF2               <---------YAB1 ----->AGL1           --------->ALFIN1    ---------->DOF2                  <------ZmHOX2a(1) ------AGL1        <---------TOE2(3)   <----------DOF2<<<<<<<GRF7        <---------TOE2(3) <xxxxxxxxx   ggacccaagaatgtgtccattaatgtgttgaactctatcggctctaaagctttcctgacagtcgagacaattttgaaggatgaatgctttgatacccttg  574300                        <------MYB46(1)                        <------MYB83                      <--------P                 <---------ANAC46                ------>NtERF2             <---------At4g35610             --------->At4g35610                             --------->YAB1             --------->TOE2(3)      xxxxxxxxxxxxxxxx>smallRNA(i)                    --------------->AtSPL8          <-------TEIL    <-----------GT1 <xxxxxxxxxxxxxxxxsmallRNA(i)     --------------------->WRI1  <---------AHL20(2) xxxxxxxxxxxxxsmallRNA(fl3)      <----------DOF2 <---------GLK1(2) *TSS          --------->AHL20(2)   taatattatctacttcgctgcctggttggaacagtcttttagggaagaacagtttctttgtactcatatttctcaaaacctgattaaatacattaacaca  574400        <-----------GT1   <---------AHL20(1)   --------->AHL20(2)                                            ---------->ID1   <---------AHL20(2)              <-----------GT1             <---------MYB46(3)        <---------ICU4   --------->AHL20(1)          ----------->TBP                 <-----------RAV1(1) --------->YAB1  --  --------->AHL20(2)      ----------->GT1                   ------->TEIL     --------->YAB1     -----   gtcattaaattaacacagttttttgaaatggttttaaaaaccatttttgtaaatctattatgcatttgttgttttcgaaacataaacatagtcattacaa  574500           <----------DOF2           --------->TOE2(3)        <---------ARR11(3)        --------->ARR11(3)    ---------->DOF2                                                                          <------- --------->GT1                         ---------->DOF2                                    <---------ICU4 ---->ANAC46                <-----------GT1                      <----------DOF2          --------->YAB1   gtcgtttaaagaactttaaaaacccttgtaaaaccatttttcaaagtcattagaagtcgttttaagactttaaaaacccttgtaaaacacagtcattacc  574600                                                          ---------->DOF2                                                   <--------HAHB4                                                   <---------ICU4               ----------->GT1                                                   --------->YAB1      --------->At4g35610                   <---------MYB52(1)             <---------ATHB12     <---------At4g35610     <-----      <----------DOF2                           <-----------GT1       ------->GAMYB            <-----      ------>ZmHOX2a(1)  <-----------GT1      --------->AHL20(2)     --------->MYB46(3)  --------->DAG2 ----GT1   ---------->DOF2                    <---------AHL20(2)   --------->MYB52(1)   ---------->DOF2   ccataatcctttttaaagaccgttttgaaaccattccaaaaacaaaattttaatcattttcaaagaacacaaccgctgaaaatagaaacaaaaagccctt  574700                                            <------ZmHOX2a(2)                                           --------->ARR14(2)                                           <---------ARR14(2)                                           <---------ARR11(3)                                           <---------AGP1              <---------ATHB12             --------->GLK1(2)             --------->ANAC46              --------->ARR11(3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       ------>MYB46(1)                    <------ZmHOX2a(1)                               <---------TOE1(3)       -------->P                   <---------ANAC55(2)                            <---------At5g28300       ------>MYB83           --------->AHL20(2)      --------->AHL20(2)          <-----------GT1     --------->AtMYB61        <---------ARR11(3)      <---------AHL20(2)  --------->WOX13(1)    --------->MYB46(3)       <---------CCA1(2)       --------->AHL20(2)--------->TOE2(3)  <---------TOE2(3) -----DOF2  --------->WOX13(1)--------->AHL20(1) --------->AHL20(2)   --------->YAB1     ---------->DOF2 ----DAG2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)------>ZmHOX2a(2)       <---------ATHB12<---------ZAT6   ttccaaaccaactccaatcaactggtaacccatatattaagtgaggatctataaattaaaatacaaacccaaacatcaatctatttactgttaaagtttc  574800                                                             <---------TOE1(3)                                ----------->GT1              <---------TOE2(3)                 ------                           ------->GAMYB                <----------DOF2                --------->TOE1(3) <----------ID1         ----------->RAV1(1)       <---------ARR11(3)                   <----------DOF2 ----------->GT1       --------->REM1(1)          --------->ARR11(3)                   --------->TOE2(3)   aaaacgaaaaaactttgaaattgctacaacagagaagttaatcggcatttgaaatcttctttgaaggtttttgaaacccaaatatcaaactttaaaacat  574900  Previous    Next  AGI:  At2g02200.1    Description:  transposable element gene. pseudogene, hypothetical protein, similar to At2g04970, At2g15200, At1g32830, At2g14140, At3g30450, At4g03990, At5g34895, At3g47270 Range:  from: 570438    to: 574367    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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