Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                        --------->AHL20(1)                        <---------AHL20(1)                        --------->AHL20(2)         <------MYB83                        <---------AHL20(2)         <------MYB46(1)                       --------->AHL20(2)         <---------TOE1(2)                  <---------At4g35610      <---------DAG2                                        <---                  --------->At4g35610      <----------DOF2                           --------->AHL20(2)              --------->ARR14(2)         --------->HSFC1(2)                  <----------DOF2    -----              <---------ARR14(2)         <---------HSFC1(2)     <---------AHL20(2) --------->YAB1----   cttccattaatctgcaaatcagctaataaatttctatcgtcgaagctttttgtaggtatacgtttttttatttctctcactttaaaaataaaaaccaaaa  560500                                                                              ---------->DOF2                                                                  --------->ARR11(3)                                                                 <---------GLK1(1)                                                                 --------->GLK1(1)            -------                                                                 <---------RVE1(1)           --------                                                                 --------->CCA1(1)          ---------       --------->AtLEC2                                          <---------CCA1(1)      --------->AHL20(2) --------->AHL20(2)                                              --------->RVE1(1) <------ZmHOX2a(2) <---------AHL20(2)               <------ZmHOX2a(1)             --------->ARR11(3)--------->ARR11(3) --------->AHL20(1)     =================HOX2a_HOX2a      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    -- ------AHL20(2)         ------>ZmHOX2a(2)          ----------->RAV1(2)  --------->YAB1  --------->YAB1 ---->AHL20(2)        <---------ARR11(3)    <-----------RAV1(1) <---------ARR11(3)<---------ARR11(3)< ----->AHL20(2)       --------->ARR11(3)    ===================RAV<---------ARR11(3) --------->WOX13(1)   aaattttttatgcaaaaacaaaatgatctcatatgaggactcttgtatgttgggcctggccctgaagatatctattgtaagaaagatcaattaaaaaagt  560600      --------->TOE2(3)      --------->TOE1(3)                                                                       <------      --------->YAB1              <---------ANAC58                                            <------     ============================================================MADS_MADS                    -------     <---------YAB1          <---------ICU4                                              --------->ANAC46     ----------------->AG --------->YAB1         --------------->AGL15                   --------->ANAC58   <-----------GT1        <---------ICU4        <-----------------AGL1                   --------->ANAC58 ---->GT1   ------->GAMYB<---------ATHB12       --------->ANAC55(2)                   <------ZmHOX2a(2) ->DAG2    <------------AtMYB77   <---------ANAC58 --------->ATHB12             <---------ANAC46  <-- ->DOF2  --------->MYB52(1) <---------YAB1 <---------ANAC58                     <---------ANAC58===== ------->ICU4            <---------YAB1    <---------ANAC58   <---------AHL20(1)<---------ANAC58<---- ---------ICU4         --------->YAB1  <----------DOF2 --------->MYB59      <----------DOF2   -------   aaaaattaccataactgtcattctctaatcataatagcttactttgcttcacttgattaggcataatatttgaattctctttgtgtggatcaagccagct  560700                           --------->ALFIN1                          ------->MYC3                          <-------MYC4                          <-------MYC2                          ------->MYC2                          ------->PIF5                          <-------PIF5                          ------->MYC4                          <-------MYC3                         <---------TGA1a                         --------->TGA1a                         --------->O2                         <---------PIF3(3)                         <---------O2                         --------->PIF3(3)                         <<<<<<<<<<HY5<-----------HVH21                         <---------ANAC46                                          <---------LBD16                     ----------------->PIF3(1)                                    <---------At5g28300                   ------->MYC2    <---------ANAC58                               --------->MYB52(1)                   ------->MYC3    <---------ANAC46                              <<<<<<<<<GT-2                   ------->MYC4    <---------ANAC58                              <-----------GT1 ---ZAT2<----------DOF2<---------ALFIN1  --------->WOX13(1)                   <---------ICU4     ---- ---At4g35610      <-------MYC3--------->At4g35610                            <--------HAHB4     <--- -->ZAT2===========================bZIP_DOF <---------WRKY12                  --------->YAB1    <---- -------AtMYB61    <-------MYC2--------->ZAT2                                <---------YAB1    ------ ==================================bZIP_DOF <---------WRKY38(1)              --------->ICU4  <------- ------DOF2      <-------MYC3  <---------At4g35610                     --------->LBD16  --------->GLK1(1) -->At4g35610    ------->MYC3  <---------ZAT2         --------->MYB46(3)------>NtERF2--------->LBD16   ttggtttgctctttatccacatgtgccacgtggagcagcgtgtcagtcaactttcaacaactacttgactctcccgacgataattaccggctatctccgg  560800                    <---------ARR11(1)                   <---------MYB52(1)              ------>NtERF2             <---------DEAR3(1)            --------->ATERF1(1)            --------->DDF1           <-----------HVH21          --------->bZIP60(1)                                    --------->LBD16          <---------TGA1a                                       --------->HSFB2a(2)          <---------bZIP60(1)                                   <---------HSFB2a(2)          --------->TGA1a                                      *TSS          ========================bZIP_DOF                     <---------ANAC46    --------->ARR14(2)                                         <---------LBD16    <---------ARR14(2)                                --------->AHL20(2) ----->ARR14(2)  <---------MYB46(3)                   <---------AHL20(2)                     -------- ------ARR14(2)<------NtERF2                         <---------AHL20(2)              ----------->GT1 -----MYB52(1)<---------DEAR3(2)             <-----------GT1  <---------LBD16      ---------->DOF2 --->LBD16--------->O2              ---------->ID1   --------->AHL20(2)   <---------------AGL15 --LBD16  <---------O2 <----------DOF2 <---------MYB52(1)<---------AHL20(2)    ---------->DOF2    ---   ttctcgtttccgacgtcggccgtttctttttcatttttgtcgttttttttccaaatttttttatttcgggaaaataacaaaaaaagaaagaaataaaaag  560900                                                                                             --------                                                                                             <-------                                                                                          <---------TOE2(3)                                                                                       <------NtERF2                                                                                       --------->ATERF1(1)                                                                                      ------>NtERF2                                                                                     --------->DEAR3(1)                                                                                     <---------DEAR3(1)                                                                                     <---------ANAC46                                                                                    --------->RRTF1(1)                                                                                    --------->RAP2.3(1)                                                                                    <------NtERF2                                                                                   <---------DEAR4(2)                                                                                   <---------RRTF1(1)                                                                                   <---------ATERF1(1)                                                                                   <---------RAP2.6(1)                                                                                   ------>NtERF2                                                                                   <---------ORA47(2)                                                                                   <---------RAP2.3(1)                                                                                   <---------ERF1                                                                                  <---------RAP2.3(3)                                                                                  --------->DEAR3(1)                                                                                  <---------RAP2.3(2)                                                                                  <---------DEAR3(1)                                       --------->GLK1(2)        <---------ANAC46 <---------ABI4(1)                                       --------->ARR14(2)  ----------->HVH21     <---------LBD16<----                                       <---------ARR11(3)--------->At4g35610     --------->ATERF1(1)                              ------->TEIL               <---------At4g35610   <---------DEAR3(1)            --------->LBD16<---------YAB1               --------->GLK1(2)    <---------ARR14(2) -----        <---------ARR14(2) <---------ANAC46     --------->HSFB2a(2)          --------->ARR14(2) ----- -->DOF2--------->ARR14(2) <---------ANAC55(2)  <---------HSFB2a(2)--------->REM1(2)--------->ATERF1(1) -------->GT1        <---------YAB1--------->YAB1      <---------GLK1(2)     --------->GLK1(2)  -----   aggtgattcaaatccagagagttctcattatgtatattcaaaatctgaatcgagaaggaatctgactcgtgtagatgagaatcggcggcgtcgaggttac  561000                                              <---------ARR11(3)                                              --------->ARR11(3)                                        --------->ATERF1(1)                                        <-------GAMYB                                        <------NtERF2                                       <---------DEAR3(2)                                       <---------MYB46(3)                                      <---------DEAR3(1)                                      -------                                     <---------ABI4(1)                                        <------                                     --------->ATERF1(1)                                      <------          <------NtERF2              <------NtERF2                                            -------        <---------DEAR3(1)          <---------ERF1                                           ------->TEIL        <---------ANAC46            <---------RAP2.3(1)                                      --------      <-----------HVH21             <---------DEAR3(2)                                       <-------     <---------ANAC46              <---------DEAR3(1)                                        --------     <---------ANAC58              <---------DREB2C(2)                                      <--------     <---------ANAC58              <---------At1g77200                        <-----------HVH21 ->ARR14(2)              <------NtERF2<---------DREB2C(2)       <---------HSFC1(2)      <---------DOF5.7(2) --ARR14(2)            <---------DEAR3(1)--------->ALFIN1       --------->HSFB2a(1)   --------->DOF5.7(2) -----ANAC55(2)       <------NtERF2<---------RAP2.3(3)          --------->HSFC1(2)  --------->ANAC58< ---->ANAC55(2)  --------->bZIP60(1)<---------ORA47(2)          <---------HSFB2a(1) --------->ANAC58- ---->ANAC58     <---------bZIP60(1)------>NtERF2         ---------->DOF2    <---------MYB46(3) <---- ---->ANAC58<---------At4g35610  <-----------HVH21   ------->TEIL        <---------AtMYB61  <--------   gaaatttgcgtcggagatgatgtcgtcgtcgtcttcgtcggcggtggagatgttgaatctcaaagaagcttcgaattggtggtcagacgtaaacgaatct  561100               ------->TEIL               <-----------ARR10               --------->ARR14(2)          <---------ARR14(2)                                                                 <------- -->HSFB2a(1)  <---------ARR11(1)                                                        <---------WOX13(1) ---HSFB2a(1)  <---------TOE1(2)                                                       --------->ATHB12 ---GLK1(1)    <---------ARR14(2)                                                     <---------YAB1 -->GLK1(1)   <---------ARR14(1)                                               <---------LBD16 ->ARR14(2)   <---------CCA1(2)             <---------GLK1(2)                --------->ARR14(2) --ARR14(2) ------>ZmHOX2a(2)               --------->ARR14(2)               <---------ARR14(2) ->GLK1(2)--------->ARR14(2)                <---------ARR14(2)            <---------ANAC58  <-------- -ARR14(1)<---------ARR11(3)             --------->ANAC58                 <---------ANAC58 --------->YAB1 ---------ARR14(2)                       --------->ANAC58           <-------TEIL   <---------ARR14(2) -------->ARR14(2)                       --------->ANAC46         <---------SPL7<---------HSFB2a(2) -------------AGL1                       --------->ANAC55(2)    --------->ALFIN1--------->HSFB2a(2) -GLK1(2)<------ZmHOX2a(1)              <---------LBD16       <-----------RAV1(1)  --------->ARR14(2)   ccgatttggcaggatcgtatcttccatgttctcgctgttctctacggaatcgtttccctcgttgctgtggtacgtttcgtttctggatttgattgatgat  561200                                                                                      <------MYB83                                                                                      <------MYB46(1)                                                                                    <--------P                                                                                  --------->ATHB12                                                                                 <---------YAB1                                                                                 <---------TOE2(3)                                                                           <---------------AGL15                                                                           ------>ZmHOX2a(1)---------                         <---------YAB1                                    --------------->AGL15    -                        <---------TOE1(2)                                 <-----------------AGL2    <                        <---------TOE2(2)                                 ----------------->AGL3  ---                   --------->ARR11(3)                                 <---------GLK1(1)     ---------                   <---------ARR11(3)                                 --------->GLK1(1)  <---------DEAR3(1) --YAB1         <-----------GT1              <-------TEIL    <---------YAB1--------->LBD16  --------- -TOE2(3)    <---------REM1(1)      <XXXXXXXXXXXXXXXXXXXXXXXMIR405A/B/D   <-----------------AGL3-----   tcttcgatgaaattggtgtaacatcttatgtttgattttggtttagattcaacttgtgagaatacaattgagagttcctgaatatggttggacgacgcaa  561300                                                            <---------ANAC55(1)                                                            <---------ANAC58                                                  <---------ARR14(2)                                                  --------->ARR14(2)                                                --------->LBD16   <----------DOF2                             <---------ANAC46                       --------->ATHB12 >ANAC58                                      <---------At4g35610                   <---------WOX13(1) -------->ARR11(3)                         <---------At4g35610                    --------->ATHB12 ---------ARR11(3)                     <-----------RAV1(1)  <---------ANAC46  --------->ATHB12 ------>DAG2                           <---------ZAT6       <---------ANAC58<---------WOX13(1) >ANAC58 <----------DOF2         <---------MYB46(3)   <---------YAB1      --------->ATHB12 >ANAC46 <---------DAG2         <---------TOE2(3) <---------GLK1(2)      <---------YAB1 ----->DOF2          <-------GAMYB <--------P <---------LBD16  <---------TOE1(2)<---------WOX13(1)   aaggtctttcactttctcaatttcgttgttaatggaggttagtgttgctgcggattttgatttcgtgtgttcatgttgattgattgattgatttggctca  561400  Previous    Next  AGI:  At2g02180.1    Description:  TOM3 (tobamovirus multiplication protein 3). similar to (TOM THREE HOMOLOG), virion binding [Arabidopsis thaliana] (TAIR:AT1G14530.2); similar to (TOM THREE HOMOLOG), virion binding [Arabidopsis thaliana] (TAIR:AT1G14530.1); similar to unknown [Brassica rapa] (GB:ABJ15786.1); contains InterPro domain Protein of unknown function DUF1084 (InterPro:IPR009457) Range:  from: 560863    to: 563232    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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