Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      ------>ZmHOX2a(2)                          <-----------GT1                          <<<<<<<<<<<<<<<<<LFY                 --------->ANAC58               -------         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 --------->ANAC58        <---------ALFIN1        --------->HSFB2a(2)        <------ZmHOX2a(2)     ------>NtERF2                --------->LBD16        <---------HSFB2a(2)       <---------ARR14(2)   <---------ANAC58             ------>NtERF2 ------->At5g28300 <------ZmHOX2a(2)<-------TEIL  <----------DOF2                  --------->DEAR3(1) -->MYB46(3)---------->DOF2       --------->ARR14(2)   <---------ANAC58          <---------ZAT18  <--   ctgtgaatttccaaaacagcgatctaatttacattggatccattcttcatttcttttgcctccccaagtaaaactatttccagtgccccccaattcatgc  535900                                                                                                   <-                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <--------                                              --------->ANAC46                              ---------                                       --------->HSFC1(2)                                 <---------YAB1                                       <---------HSFC1(2)           <-----------GT1   <---------ARR11(3)       <--------P                      --------->HSFB2a(1) ------>NtERF2              --------->ARR11(3)       <---------WOX13(1)              <---------HSFB2a(1)<---------ALFIN1           --------->RVE1(1)     <---------MYB46(3)         ---------->DOF2        <---------PCF5   ------>ZmHOX2a(1)--------->TOE2(3) -->AtLEC2    --------->YAB1  ------>ZmHOX2a(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------YAB1 -------CCA1(2)  <---------GLK1(2)<xxxxxxxxxxxxxxxxsmallRNA(i)    <-----------GT1    --------->CCA1(1)   atatcactggttgatatcatattcttgaagtcctgaaaggaagattccactctagatgggccacctattttctccttattagacaaaatatcattaaaat  536000       --------->MYB46(3)      --------->ANAC58      --------->ANAC58     --------->WOX13(1)       --------->ANAC46       --------->LBD16    ---------->DOF2        <---------ZAT14          <-----------RAV1(2)                --------->YAB1   <---------ATHB12        --------->ZAT14          <---------LBD16                   <---------YAB1 --------------AGL15       <---------ZAT18          <---------HSFB2a(2)      <---------ANAC46 -AHL20(2)       --------->At4g35610           <---------AHL20(2)            <---------ANAC58<xxxxxxx >AHL20(2)       <---------At4g35610   <-----------GT1 <------ZmHOX2a(1)     <---------ANAC58--------   cccctatcaagcaccaaggagctgttctgttcactccaatgttactgattttatccaggagcaagtgtcttagcctctgtcttggattatcataaacaca  536100                                        --------->ANAC58                                    --------->ARR14(2)                                    <---------ARR14(2)                            --------->ARR11(3)                            <---------ARR11(3)                           --------->GLK1(1)                           <---------RVE1(1)                      --------->GLK1(2)                           <---------GLK1(1)                      <---------ARR14(2)                           --------->RVE1(1)                     --------->GLK1(1)                          --------->ARR11(3)                     <---------GLK1(1)          <--------    <-----------GT1 --------->TOE2(3)   --------->ANAC58     --------->ANAC58               --------- xxxxxxxxxxxxxxxsmallRNA(si3)   ----------------->AGL2       --------->ANAC58               --------- ->ANAC46<---------CCA1(2)<---------ARR11(3)        ---------->ID1--------->ARR14(2)        <--------   agagataaaccatctcttacaaccttgagatatctccaaatccagcaagtttttgtcttcaacaaggaaatctgtatgaaggtgatgtttccaaaatatt  536200                                                      <---------ALFIN1                                                      ------->GAMYB                                                     <---------MYB111(2)                                                     --------->MYB46(3)                                                     <---------MYB55(2)                                                    ------>MYB83       <---------ALFIN1                             ------>MYB46(1)       --------->AtMYB61                   --------->YAB1      --------->MYB46(3)                   <---------ICU4    --------->AtMYB61                     <---------ATHB12   --------->MYB46(3)                     --------->ICU4   ---------->DOF2 -ARR11(3)           --------->LBD16      <---------YAB1 --------->AtMYB61 >ARR11(3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------->P                        --------->GLK1(1) >AHL20(1)  <----------DOF2        ---------->DOF2 ------>MYB83  <----------DOF2<-----------HVH21 -AHL20(1)<---------DAG2         <---------YAB1    ------>MYB46(1)          ------->TEIL   gctaaaccaccactctttccatccggttcaatagtatgaaagtaatcataacccaaccacctaaagactttcaatatgaacatgtcagaattcatggtct  536300                                                                                              xxxxxxx                                                                               ------------>CBF                                                                            ------>ZmHOX2a(1) <------ZmHOX2a(1)                                                                           <---------ANAC58   xxxxxxx                                                     <------------CBF      <---------ANAC58 <--------                                               --------->ALFIN1            <xxxxxxxxxxxxxxxxsmallRNA(s)                                             --------->O2            ------>ZmHOX2a(1)      <--------                 ----------->GT1             <---------TGA1a         xxxxxxxxxxxxxxxx>smallRNA(i)                >>>>>>>GRF7  ==========================bZIP_DOF     --------->TOE2(3)      --------->MYB52(1)             <-----------HVH21          *TSS <---------O2       <---------GLK1(1)        <---------MYB52(2)    <------ZmHOX2a(1)        <----------DOF2 --------->TGA1a    --------->GLK1(1) --------->GLK1(1)   ccatgaggaacaaaatgtcagggaaatatttctttttcatttccctcaagtgtcgaattgtccaagaattcctcagtccttggcaattccaactaaggat  536400                             <---------ABI4(2)                           --------->ARR14(2)                           <---------ARR14(2)                <---------MYB46(3)                --------->MYB55(2)                --------->ABI4(2)               --------->ALFIN1               <---------AtMYB61               <---------DEAR3(1)             <---------ANAC46<---------MYB55(2)            <---------DEAR3(1)<---------ALFIN1           <---------LBD16 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxxxxxxxxxxxxx>smallRNA(s)  <------------CBF<---------ARR14(2)          <----------DOF2 xxxxxxxxxxxxxxxx>smallRNA(si3)--------->MYB52(1)                                          <---------ANAC58 xxxxxxxxxxxxx>smallRNA(le3) --------->MYB46(3)          --------->ANAC46                  <---------ANAC58 -TOE1(3)  --------->ZAT14xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             <-----------GT1 -TOE2(3)  <---------ZAT14<------ZmHOX2a(1)  <---------DAG2    <---------DAG2        <----------DOF2   gccttattgatactgcggtggttcttgaggaaccaccgtaatgacagccttttccatacaatccactctttccaagtctgcaatttccttttttcgtttg  536500                                                              <---------ANAC46                                                              <---------ANAC58                                                              <---------ANAC58                                                          <---------ANAC58                                                          <---------ANAC46                                                          <---------ANAC58                        <--                                <----------DOF2       <---------At4g35610                    <-------                                <---------DAG2        --------->At4g35610                    <-------                           -------->P                 <---------ZAT2                         <-------                      --------->ZAT6           <-----------HVH21                    <----------DOF2<x                     <---------TOE2(3)       --------->MYB46(3)       --------->ZAT18   <----------DOF2                 --------->TOE2(3)    <----------DOF2 --------->ZAT2  <---------ZAT18  <-------------   atagcattagcaaactcaacattaagactaacctctttttcttttgaaccatcacgagctgcttgcttattgtgaactatagaagcctttctttttcttg  536600      <---------At4g35610      --------->LBD16      --------->At4g35610     <------NtERF2                                   <---------ANAC58   <---------At4g35610       ------>NtERF2                                    <---------ANAC58 -------GLK1(2)              <---------LBD16                    <---------ARR14(2) --ANAC46             ------>ZmHOX2a(1)          --------->DAG2 --------->ARR14(2)                --- --ANAC58     --------->ANAC55(2)       <---------AHL20(2)      <---------ARR11(1)    <---------LBD16 --ANAC58     <---------ANAC55(2)    --------->TOE2(3)          --------->GLK1(2)     <---------At4g35610 xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<-------TEIL---------->DOF2  ------->TEIL<---------YAB1  --------- -----------ANAC81  ----------->RAV1(2)--------->AHL20(2)      <---------ARR14(1)     --------->At4g35610   gattcttctgcttaatacttaatcctgatgcccccgattcattaaatccaaaagggaacccttccgaatctattgaagatgcttgatcagcggataaaga  536700                                                                                        <----------DOF2                                                                                    <----------DOF2                                                                                 --------->ARR14(3)                                                                                 --------->AGP1                                                                                 <---------ARR11(3)                                                                    --------->YAB1 ------>ZmHOX2a(2)                           --------->LBD16                     ===========================HOX2a_HOX2a              <---------KAN4(1)    --------->ANAC46            ==========================HOX2a_HOX2a              --------->KAN4(1)  <-----------GT1          --------->GLK1(1)      --------->ARR14(2)           <------ZmHOX2a(1)  <---------ARR14(2)          <---------GLK1(1)      <---------ARR14(2)          <------MYB83     ------>ZmHOX2a(1)           --------->ANAC58          <---------ARR14(3)          <------MYB46(1) <---------LBD16     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<------ZmHOX2a(2) -------->GT1<---------KAN4(2)--------->ARR14(2)       --------->ANAC58        ----------->ARR10<---- ->DOF2 <--------P       ----------->RAV1(2)  <----------DOF2  ------>ZmHOX2a(1) --------->ARR11(3)   aggtaacttggtaggaacaatcttctctcctggattcactaaacaactctttccatcaagaaatcctgaatcagaaaaactaagatctttctttgattct  536800  Previous    Next  AGI:  At2g02110.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.7e-36 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus) Range:  from: 532319    to: 536340    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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