Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <------NtERF2              --------->DREB2C(2)              --------->DEAR3(1)                           ---------->DOF2  --------->YAB1            --------->MYB52(1)            --------------->AGL15      --------->At4g35610           <---------ALFIN1              ----------------->AGL3 <---------GLK1(1)                   < -----HVH21--------->ANAC46       <---------At5g28300    <------NtERF2    <------------CBF         -- -->LBD16<---------ALFIN1        <-----------GT1      <------ZmHOX2a(1)------>NtERF2    --------->TOE1(3)   gaacaacttctccacaccggcatcgaaatagaaatttaccgttcccatgaagagaaggaggcaaagaaatcggctccattgtaatggaaaccataagaaa  481900                                           --------->ZAT18                                          --------->RAP2.6(2)                                    XXXXXXXXXXXXXXXXXXXX>MIR171A                                  <--                                  --------->ATHB12                            <---------YAB1      <--                                 <---------ATHB12                            <---------TOE1(2)    <--              <---------O2       --------->ICU4                              <---------TOE2(2)   <---     ---------->DOF2             <---------YAB1                            <---------SPL7       <----   <---------YAB1    <-------GAMYB-------->HAHB4                  ------->GAMYB              <-------TEIL ---------AHL20(2)  <---------MYB46(3)   --------->ANAC46        --------->ANAC58          --------->TOE2(2) ------->AHL20(2)------------>AtMYB77  <-----------GT1           --------->ANAC58       ----------->RAV1(1)   attttatgaaagagagacatggcagttactatgaaatgattaaaccgcaccaagagagaagagaacaacgcactggtcgtatgtttgatgcaacatacgt  482000                              ------>ZmHOX2a(2)                             <------ZmHOX2a(2)                             --------->CCA1(2)                            <---------AGP1                            --------->AGP1                                                  <--------                            --------->ARR14(3)                                            -----------                            <---------ARR14(3)                                            ------>ZmHOX2a(2)                            --------->ARR11(3)                                 ----------->HVH21       ------>NtERF2        <---------ARR11(3)                                <---------WOX13(1)       <---------ZAT18      <---------ARR14(2)                               <---------ANAC58   <---------AtMYB61        --------->ARR14(2)                               <---------ANAC58 -------MYB46(3)          ----------->ARR10                        --------->TOE2(3)     <------ZmHOX2a(2) ----MYB83  <---------ATHB12<-----------ARR10                      --------->YAB1       <---------ARR14(2) ----MYB46(1)        <----------ID1                 <-----------HVH21        <---------AtLEC2-------- ------DEAR3(1)      <---------ETT(1)          <---------YAB1     <---------YAB1        --------->ARR14(2) -----MYB52(1) <---------YAB1--------->ARR14(1)--------->ICU4     ----------->GT1 --------->ETT(2)   tggtgatggtgcccatgatgtttgcgacaagatctgcttcttcatggtgatgatggtcacaacaagttatgttaatcttgcttgacgacggatcgtgatt  482100                                  <------MYB83                                  --------->ANAC58                                  --------->ANAC58                                  <------MYB46(1)                                 --------->MYB59                             --------->ANAC58                                      ---------->DOF2                  <-----------RAV1(1)                                         --------->ZAT6                 <---------LBD16 --------->MYB46(2)                     ----------->GT1  --------->HSFB2a(2)        --------->ANAC58                         <------------CBF  <---------HSFB2a(2) --------->ALFIN1                              --------->AHL20(2) -YAB1  --------->ANAC58  <------NtERF2        <---------ZAT6       <---------AHL20(2) >GT1   --------->ANAC58--------->ALFIN1       ----------->GT1      --------->AHL20(1)    ----------- ->ATHB12     <---------CCA1(2) <--------P  --------->STY1(1)      --------->AHL20(2)     <------NtERF2   tgttcgagacaggcccgtctctgggggtggcaaggtaggcaaatgcctagggttactaactaatttcaaaaaaattgttaagactaaaaggccccaatat  482200                                                                                                 ====                                                                                                 ====                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                             <-------                                                                                             <-------                                                                                            <--------                         <---------AHL20(2)                                        <------MYB46(1)                         <---------AHL20(1)                           <---------LBD16       ---------                         --------->AHL20(1)                    <------------CBF    <------MYB83  ----                        --------->AHL20(2)                   <---------AHL20(2)   --------->MYB59----            --------->AHL20(2)--------->AHL20(2)          <---------ICU4        <---------MYB52(1)        --------->AHL20(2)    <---------AHL20(1)          --------->YAB1<------NtERF2       <--------        <---------AHL20(2)    <---------AHL20(2)         --------->ICU4--------->LBD16      <-------- ->CBF --------->AHL20(2)--------->AHL20(2)         --------->PCF2   <---------LBD16   --------->MYB52(2)   ttcaaaaaaaaaaatttactaagaaattttattttattttgggttttgccataggtcccataatgaattgagccgggagactgtttggtcagtttcgtca  482300                   ------------>CBF   <---------ARR14(2)   --------->ARR14(2)   --------->ARR11(3)  <---------ATHB12   <---------GLK1(2) --------->MYB52(1) ==========================MYC_MYB ======================MYC_MYB                                                                      - ----->ANAC58      --------->MYB46(3)                                                               - ----->ANAC46      <---------MYB55(2)                                                              -- ------TGA1a       <---------ATHB12                                                                -- ------bZIP60(1)  -------->P                                                                      --- ----->TGA1a      ------>MYB83                                             --------->LBD16       ---- ------O2         ------>MYB46(1)                                        <---------LBD16       ------ ----HVH21        --------->ANAC58                                     <---------ARR14(2)  --------->DEAR3(1) ----TGA1         --------->ANAC58                                     --------->ARR14(2)  ---------- -ANAC58         ------>MYB46(1)                                      --------->CCA1(2)    <---------ETT(1) >bZIP60(1)      ------>MYB83                                         <---------GLK1(1)    --------->DREB2C(2) ----->ANAC58  ------->GAMYB    --------->ATHB12          ----------->RAV1(1)              --------->At1g77200 ----->O2      --------->MYB46(3)   ----------->GT1    ------>NtERF2  --------->GLK1(1)   --------->MYB46(3) -ANAC58     --------->ANAC58  --------->ICU4          <------NtERF2 <---------ARR11(3)   --------->DEAR3(2) -bZIP60(1)  --------->ANAC58  <---------YAB1       <---------LBD16  --------->ARR11(3)  ------->TEIL   cgacagattttggacaacccaaccaatggtgtaatgagtggcaaaaccagttctcgcggccaacaagatgagatatccggcgaaaaacatgaaccgacac  482400      <------ZmHOX2a(1)                                                                            -- -------->ANAC58                                                                                  <-- -------->ANAC58                                                                                <---- ---->MYB46(1)                                                                                  ----- ---->MYB83                                                        <---------YAB1               ----- ------>MYB52(1)                                                <---------AHL20(1)              <---- ----->AtMYB61                         <---------ICU4           <---------AHL20(2)             ------ >NtERF2                               --------->YAB1           --------->AHL20(2)  <---------AHL20(2) ->HVH21          ---------->DOF2   --------->YAB1          <---------AHL20(2)   ----------->GT1-----   caacgtaaggagaagagagagaaagacgataatcgccaaaataatcactcacaaatttgtttttattttattttaggggaatttagttaaattttgaatt  482500                                                                         <-----------GT1    --------->ARR11(3)                                              <---------YAB1 <---------YAB1                                                   <---------ZAT6 ------->YAB1                                                --------->TOE2(3) -------YAB1                         <---------TOE2(3)     <---------ARR14(2) ----HAHB4                     --------->WOX13(1)          --------->ARR11(3)                      <- ---->YAB1                  --------->TOE2(3)              --------->GLK1(2)                  <------ --->ATHB1                 <---------ANAC55(2)             --------->ARR14(2)               --------- -----ICU4                 --------->ANAC55(2)             <---------ARR11(3)            <-----------GT1 --->ICU4                  --------->ANAC46                <-----------ARR10         --------->AHL20(2) ---->ATHB51             <-----------GT1--------->CCA1(2) <---------CCA1(2)     <---------AHL20(2) --   attatagttcttggattcagaagttatttacgtcaatctaagatttgagttaatctaggcaaatcttagtattatttactatgtaaatgaattacattat  482600                                        --------->TOE2(3)                                        --------->TOE1(3)                                        --------->YAB1 --------------AGL15               --------->AHL20(2)                       ------->GAMYB        ---- ---ICU4                           <---------AHL20(2)   <----------DOF2  --------->MYB52(1)      <--- >TOE2(3)                        <---------YAB1     <---------TOE2(3) --------->YAB1          ------- ------------->AGL15       ---------->ID1   ---------->DOF2        --------->YAB1            --------   tccaattagagatttgttctaacaattttgtagttattttaatcttaaaagtttgaggctttgagccatggataataacggaaaacaattctcaaataaa  482700                                                                         <-------GAMYB                                                                       <---------ANAC46                                        <---------ICU4               ------------>AtMYB77                                       <---------YAB1                ------------>MYB.PH3(1)                                       --------->ICU4               ----------->HVH21                                     --------->YAB1               <---------ICU4                                  --------->ANAC46              <----------DOF2      <---------ARR14(2)     ---------->DOF2        --------->CCA1(2)              <---------ALFIN1       --------->AHL20(2) ----->AHL20(2)            --------->ARR11(3)             --------->MYB46(3)  ---------->DOF2 ------AHL20(2)            <---------ARR11(3)           --------->ANAC58 --------->At5g28300 -->AHL20(2)     <-----------GT1 <-------TEIL           --------->ANAC58<---------MYB46(3) ->AHL20(2)  --------->TOE2(3)  <-----------GT1         --------->ANAC46----------->GT1   aaaataacaaagaaacattaaactatatagatatatacatcataattcacgttgattccagccactctttatgacggttacaaagaaaatatggaaacag  482800  Previous    Next  AGI:  At2g02026.1    Description:  unknown protein Range:  from: 481906    to: 482085    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g02030.1    Description:  F-box family protein. Identical to Putative F-box protein At2g02030 [Arabidopsis Thaliana] (GB:Q9ZPS1); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G09650.1); similar to predicted F-box and bHLH containing protein [Overexpression vector pFC12860OE] (GB:ABK41847.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 482334    to: 483828    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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