Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 -------->P                                                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                              ----------->RAV1(1)                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  --------->ANAC46--------->ANAC58                                                                  <-----------GT1 --------->ANAC58                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                            <---------YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                 ----------->GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                --------->DAG2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               ---------->DOF2  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<-----------------AGL1                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AtLEC2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    ------>ZmHOX2a(1)       <---------HSFB2a(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   --------->TOE2(3) <-----------GT1   <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)           xx               <---------CCA1(2)    <-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         ---       <---------WOX13(1)    --------->ZAT6 --------->HSFB2a(2)<xxxxxxxxxxxxxxxxxxsmallRNA(si3)   <--   aaacagaagattgacatatatcctaaatctaatactatttaaccttctataaagttattttcatgaatacaccatatggccaacacgaacacatattcag  347100                                                                        <-------PIF5                                                                        ------->PIF5                                                                        ------->MYC2                                                                        <-------MYC2                                                                        <-------MYC3                                                                       <---------ANAC55(2)                                                                       --------->ANAC55(2)                          --------->ANAC58                             <---------ANAC46                          --------->ANAC46                             <---------bZIP60(2)                          --------->AtLEC2      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          --------->ANAC58      <-----------HVH21      ==============================                         <---------LBD16      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->O2                      <<<<<<<<<GATA-2   =========================================bZIP_DOF                      <<<<<<<<<GATA-1   ---------->DOF2                <---------O2                <-                      <<<<<<<<<GATA-3 --------->ANAC58                 --------->TGA1a             --                      <<<<<<<<<GATA-4 --------->ANAC46                 <---------TGA1a          -----              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->WOX13(1)                      -----           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->O2  >>>>>>>>>>>>>>>>>LFY          <--------- >smallRNA(si3)     --------->WOX13(1)xxxxxxxxxxxxxxxx>smallRNA(i) <-----------HVH21  ------>MYB83--- xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ANAC58 --------->MYB46(3)  <-----------HVH21  <------ ------>GLK1(1)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->AHL20(2) -------GLK1(1)  --------->TOE2(3)<---------ALFIN1   ----------->RAV1(1)------->MYC3  ------>MYB46(1)   aaatcacattgagcaaaatcgtcaatccacgcaaacccacacgaaagacatgtcgcaacaatcagccaatgtcacgtggtcacaaaccaaattaaaccga  347200                                                                          ----------->GT1                                                                      ---------->DOF2                                                                    ----------->HVH21                                                                   <------NtERF2                                                                  --------->At4g35610                                                                  --------->ABI4(1)                                                                  <---------ATERF1(1)                                                                  --------->LBD16                                                                 --------->ATERF1(2)                                                                 --------->RAP2.3(2)                                                                 --------->RAP2.3(3)                                                                 <---------ATERF1(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <---------DEAR3(1) ------>MYB46(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->DEAR3(1) ------>MYB83     <---------GLK1(1)                             --------->DEAR4(2) ==================bZIP_DOF                        <---------ATHB12--------->RAP2.3(1) --------MYB59    --------->GLK1(1)            ------------>CBF --------->ATERF1(1)                 < ------->AtMYB61 <---------ARR14(2)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ->MYB46(1)    --------->LBD16     --------->AHL20(2)           --------->RAP2.3(1)                 - ->MYB83      --------->ANAC46     <---------AHL20(2)           --------->ORA47(2)               ---- --GT1  <----------DOF2<---------ALFIN1 <-----------GT1         --------->ERF1                 ------ ------>MYB46(3) --------->ARR14(2)--------->AHL20(1)          <---------ATERF1(1)  --------->TOE2(3) ---MYB59    <---------LBD16       <---------AHL20(1) ------->TEIL------>NtERF2    ----------->GT1---   accaaaccctctttaaccggaactcccactcttgcaataaaataacaaaaccaatgaaccaaaatcgccgccgaaagggcaaaaatcgttaataaacaaa  347300                            --------->YAB1                           <<<<<<<<<ARR2                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <-----------TGA1                    <-----------HVH21                   <---------TGA1a                   --------->ANAC58                   --------->TGA1a  --------->ANAC46 --------->ANAC46  --------->ANAC58 --------->ANAC58  ------------>CBF  --------->ANAC58 <---------ANAC55(2)        --------->ANAC58                --------->HSFB2a(1)  --------->ANAC55(1)  ------------>CBF       <---------ANAC55(2)             --------->GLK1(1) <---------LBD16   --------->ANAC55(2)        --------->ANAC55(2)             <---------GLK1(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ANAC58                          --------->ARR14(2) ---------ALFIN1   <---------bZIP60(1)        --------->ANAC58             --------->LBD16 -------->MYB52(1) --------->bZIP60(2)        --------->ANAC46           <---------LBD16 ----->MYB46(3)    --------->bZIP60(1)       <---------TOE1(2)     --------->ANAC58 --->ANAC46        <---------O2    --------->ANAC58                --------->ANAC58         <-------- ------>AtMYB61    --------->O2 <---------ATHB12           --------->AtMYB61 <---------ARR14(2) <----   ccacacggaagaagatgagtcccgtcacaatcaaatcaggccaatctcacgttatcccaaaccaaaaccaagtaaaccggaaattccactcttactttta  347400                                                                           ------------>CBF                                                                          ------>ZmHOX2a(2)                                                                     <-------MYC3                                                                     ------->MYC3                                                                    <---------ANAC55(2)                                                                    <---------ANAC46                            ----------->RAV1(1)                     --------->bZIP60(2)                          --------->ABI4(1)                         <---------bZIP60(1)                          <---------ATERF1(1)                       =================================                          ------>NtERF2                             --------->O2                         --------->DEAR3(1)                         --------->ANAC55(2)                         --------->DREB2C(2)                        --------->TGA1a                         <---------ATERF1(2)                        <---------O2                         --------->RAP2.6(2)                        --------->bZIP60(1)                         --------->ANAC46                           <---------TGA1a                         --------->RRTF1(2)                       <-------------DYT1                         --------->RAP2.3(2)                     ----------->HVH21                         --------->RRTF1(3)                     <-----------HVH21         ------>MYB83                         --------->RAP2.3(3)                   ------>ZmHOX2a(1)          <---------ARR14(2)                         --------->ATERF1(2)               <---------ARR14(2)             ------>MYB46(1)                        --------->ORA47(2)                 --------->ARR14(2)             --------->ARR14(2)                        --------->RAP2.3(1)                --------->ARR11(3)           --------->AtMYB61     ------->GAMYB      --------->ERF1      ------------>CBF ------>ZmHOX2a(2)         ------------>CBF    --------->MYB46(3) <---------ATERF1(1)  <---------MYB52(1) ==================HOX2a_HOX2a    <---------MYB52(2)------>ZmHOX2a(2)<---------ARR14(2)  <---------ARR11(3)   --------->YAB1------>ZmHOX2a(1) --DOF2              <------ZmHOX2a(2) --------->ARR14(2)----------->ARR10===========================HOX2a_HOX2a -------GT1 ---------->DOF2<------NtERF2   <-----------HVH21<------ZmHOX2a(2)  <---------ATHB12   acaacaacaaaccaaaaaacacgatcgccgccacaagggcaaaaccgtcaattcacaagtagatcctgtcacgtgatcccaatgataaaaccaatcctct  347500                      ------>ZmHOX2a(1)                      <----------DOF2                      <---------DAG2               --------->LBD16               <---------MYB52(1)              --------->ANAC46             --------->HSFB2a(2)                                        --------->DAG2    ------>ZmHOX2a(1)             <---------HSFB2a(2)                 --------->ANAC46      ---------->DOF2 ------>ZmHOX2a(1)             <---------LBD16               ------->GAMYB ----------->HVH21    <------NtERF2        <----------DOF2                 --------->ARR14(2) <---------LBD16  --------->RAP2.3(3) <---- ==================bZIP_DOF  <-----------HVH21  --------->SPL7   <----------ID1 ---------->DOF2<-----   ctctctctctcttttcccgtagtcctttttcagtcatggcgataaccgcatacgacgctctcacggagagacaaaaagcccccaaagtcctccttattaa  347600                                                             ----------->RAV1(1)         --------->KAN4(2)                                                            ----------->HVH21          --------->ARR14(2)                                                            --------->ANAC46           ---------->TaMYB80                                                           --------->LBD16             <---------ARR14(2)                                                          --------->ANAC46        <---------ANAC46                                                         <---------LBD16        ------>ZmHOX2a(1)                                                      <----------DOF2      --------->KAN4(2)                                                 ------>NtERF2            --------->HSFB2a(1)                                                 --------->LBD16          <---------HSFB2a(1)                                                 <------NtERF2            ------>ZmHOX2a(2)                                                --------->RAP2.3(2)      <------ZmHOX2a(2)                                                --------->ANAC46         ==============HOX2a_HOX2a                                                --------->RRTF1(2)      <---------ARR11(3)                                 <----------DOF2--------->DEAR3(1)      <---------ARR14(2)        <---------CCA1(2)       <---------DAG2  --------->RAP2.6(2)     --------->ARR14(2)   <-----------GT1     <---------ICU4          --------->RAP2.3(1)      --------->ARR11(3)    ------>NtERF2 -----TOE2(3)          --------->YAB1        --------->ANAC46------>NtERF2=============HOX2a_HOX2a ------GT1      <<<<<<<<<TBF1<---------ALFIN1<---------DEAR3(1) ----------->RAV1(1)--------->LBD16   cgattttgccatctcttcttcttcatcatcaccacctttcttcaacctcgccgcaactttccgcgacaacatcagatcgttcctccgtgaatatgccgag  347700                          --------->DEAR3(1)                         <------NtERF2                        ------>NtERF2                       <---------ALFIN1                       --------->DEAR3(1)                     <---------ANAC46                      <---------ABI4(2)                       <---------ANAC58                      --------->MYB46(3)             --------->AtLEC2                      --------->ATERF1(1)            --------->ANAC58                     <---------ATERF1(1)             --------->ANAC58       <----------DOF2                     ------>NtERF2              --------->ANAC58      <-----------GT1                  <---------ATERF1(1)           --------->ANAC58<------NtERF2                 --------->ANAC46         <---------ANAC46    --------->bZIP60(1)                <---------LBD16           <---------ANAC58    <---------ANAC58              ----------->HVH21           <---------ANAC58    <---------bZIP60(1)   attgaagattacaccatcgacggagccaccgtctctactattttccttggaagccaagcaaatggcgtcgttttccctctttacatcatcgaacaacaaa  347800                                                             <---------TOE2(2)                                                             <---------TOE2(3)                                                        <---------ARR11(3)                                            ----------->GT1  <---------TOE1(2)                                         <----------DOF2--------->ARR11(3)                                   <---------ETT(2)   <---------AHL20(2)     <---------MYB52(1)                                <-----------RAV1(1)--------->YAB1           <-------GAMYB--------->DAG2   <---------GLK1(2)        <---------GLK1(1)     <---------AHL20(2)     <-----------GT1---------->DOF2   tctctgattcttctccaaaccctctctgcgatttctgtcgatgctttggtaaataataaatcttaggttttgttttttcgttgttcttggtaaagtttcg  347900                        --------->AHL20(2)                <---------ANAC46            <---------ANAC46            <---------ANAC55(2)   <------MYB83            --------->ANAC55(2)   <------MYB46(1)            <---------ANAC58     --------->ALFIN1            <---------ANAC58    <--------P                             --------->YAB1            <---------ANAC55(1) --------->ALFIN1                  --------->YAB1        --------->DOF5.7(2)  <---------TOE2(3)             <------ZmHOX2a(1)      ------>ZmHOX2a(2) <---------AHL20(2)        --------->MYB52(1)  <---------YAB1     <---------YAB1   attttggatcgtttacgtgtgtgtatatatataggttggggtcatcactatgtaacgaagaggaagtatcatatgataatcccaaaccgtgatgaatgga  348000  Previous    Next  AGI:  At2g01810.1    Description:  PHD finger family protein. similar to MMD1 (MALE MEIOCYTE DEATH 1), DNA binding [Arabidopsis thaliana] (TAIR:AT1G66170.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73422.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011) Range:  from: 347536    to: 350178    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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