Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   ------>MYB83                                                                                 --------->ANAC46                                                                                 --------->ANAC58                                                                                 ------>MYB46(1)                                                                         <---------ICU4                                                                         --------->YAB1                                                                         --------->ATHB12                                                                         <--------HAHB4                                                                        --------->ICU4                                                                ----------->GT1  --------->ANAC58                                                                --------->ANAC55(2)                                                                <---------ANAC55(2)                                                           ----------->HVH21<-----------GT1                     <---------ANAC46             ----------->GT1     --------->YAB1             ----                     <---------ANAC55(2)         --------------->AtSPL3 <---------YAB1        ------>MYB83 ----ETT(2)         <---------LBD16              <---------------AtSPL8 <---------ATHB12      ------>MYB46(1) --->ETT(2)    ------>ZmHOX2a(1)      ----------->GT1--------->SPL7  --------->ICU4         ---------   actgatagaaaccagtccttgttacggaggccttgaagagcggtttttaaaatcgtacaatctgacaagtgataatcattaccacccaagttaacctaca  344900                                           <------MYB46(1)                               <---------ANAC46                               <---------ANAC58                          <---------MYB46(3)                                          --------->ANAC58                          <-----------RAV1(1)                                         --------->ANAC58                    ------>ZmHOX2a(1)      <------MYB83 ------->MYC3             --------->TOE1(3)                   --------->TOE2(3)       ----------->GT1              --------->ALFIN1       --------------->AtSPL8  <---------ANAC58         <-------MYC3---------->DOF2   --------->ANAC46 ----->ANAC46      --------->TOE1(3)      --------->MYB59--------->ALFIN1        --------->TOE2(3) >TOE1(2)       ------>ZmHOX2a(1)         --------->MYB46(2)<---------MYB46(3)<-----------GT1   aaccaaaaacaagtactccttccttaagttgttgctggtgttgtttggtaaacaaaaacgtgttgttagagaaagtgttgttaccttcaaggcagaaata  345000                                          --------->ARR14(2)                                          <---------ARR14(2)          <---------ALFIN1                <---------ARR11(3)               --------->YAB1         <--        ----------->RAV1(1)               <-----------ARR10             --------->YAB1            --- <-----------RAV1(1)                      <---------GLK1(2)          --------->YAB1              ==== <---------REM1(1)                        --------->ARR11(3)   --------->ANAC58                  ---- <---------bZIP60(2)               <----------DOF2             --------->ANAC58             ---------   gtgatgttgccaacacttgggaaacattgttcatgctctttgcagattttctctgtaaaatagacaaacaacaataaacatgagttttagagtttagtta  345100                                                                                              =======              ----------->GT1                                                                 <------    --------->DAG2                                            --------->ANAC46            <----------   ---------->DOF2                             --------------->AGL15  <---------YAB1    ----------->RAV1(1) -------------AGL15                 <---------YAB1         <---------ARR14(2)          --------->ANAC58 ------------>AGL15              --------->GLK1(2)  ---------->DOF2 --------->YAB1     --------->ANAC58 ==============================================================MADS_MADS            --------->ATERF1(1) ------------->AGL3   ---------->DOF2       <-----------GT1--------->ARR14(2)       <------ZmHOX2a(1) -->GT1      <---------TOE2(3)   --------->ICU4--------->TOE2(3)   <---------YAB1 --------->ALFIN1<--   ctacaaaaagttaccaaggtaaaaaaaaggaagagattatgaagagttacctttgaaagcatatacactatcatcactatcaaggaggagcgccagacga  345200                                                    <---------ANAC58                                                    <---------ANAC58                                            --------->LBD16                                           <---------HSFB2a(2)                                           --------->HSFB2a(2)                      --------->ANAC58    <---------LBD16                                     <------ ===========================bZIP_DOF   <---------ANAC58                                       ------- ---TGA1a             --------->ANAC58 <---------ANAC58                                      -------- -RAV1(2) <---------ZAT6XXXXXXXXXXXXXXXXXXXXX>MIR777<---------ANAC46           --------->YAB1<------- -------ZAT6     ---------->DOF2    <---------CCA1(2)                    ----------->GT1    <------ZmHOX2a(1)   gtgtcaatactagtcttcacaaagacgcattgagactcgtttcttccggacatagcttgaagaagtagggttttgaagtaaaaataagtttagaggatat  345300                                 <------ZmHOX2a(1)                             ---------->DOF2                            <------ZmHOX2a(1)               <---------STY1(1)                      -- ---GLK1(1)        ----------->GT1--------->ARR11(3)--------->YAB1             ----------->GT1     -- -->CCA1(2)        <---------------AGL15          --------->ANAC46         ------->TEIL            <- ->ARR14(2)        ------>ZmHOX2a(1)              --------->ANAC58      <---------YAB1             <- --ARR14(2)        --------------->AGL15          --------->ANAC58   --------->ICU4   <----------ID1   gagacttatttctaaggcctcctgtaaataggaaaggaccttgatattacacaagcaaaaccctaggcataaatatgaatatggaaatatgacaaaacta  345400            --------->YAB1           <---------YAB1         <---------ICU4         --------->YAB1                         <-------TEIL                                        -        --------->ICU4                     ----------->RAV1(1)                      <---------At4g35610        <---------ATHB12                  --------->ANAC58                          --------->At4g35610        <---------ATHB51                  --------->ANAC58                      --------->ANAC46    <    ------------>CBF              ------>ZmHOX2a(2)                             <---------DEAR3(1)  < ------->AHL20(1)               --------->ARR11(3)     <----------DOF2   ------>ZmHOX2a(1)  --------- ------->AHL20(2)               <---------ARR11(3)    <---------DAG2     <----------DOF2   <---------ATHB12 --------AHL20(1)      <---------GLK1(2)  --------->bZIP60(2)     ------------>CBF --------->ALFIN1 - --------AHL20(2) --------->AHL20(2)      --------->ANAC46 <-----------GT1     <---------LBD16-------   ataaaatgcaataatgaaaactaaatattctcttgatcttctccacgacatacatgccttttctctgtctcaatccttttccacggtgctgaaatcatcg  345500                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                 --------->ANAC58                                                 --------->ANAC58                                                --------->SPL1(2)                                                --------->SPL7                                              <---------MYB52(1)                                              <---------SPL7                                             --------->LBD16                                            --------->LBD16                                            <---------------AtSPL3                                           <------------------SPL14                                        <-----------HVH21                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                       <---------O2                                       ===============================bZIP_DOF            --------->MYB52(2)            =====================================bZIP_DOF                        --------->AHL20(2)    <---------ANAC58                   --------->bZIP60(2)                       <---------AHL20(2)    <---------ANAC58                   --------->ANAC58                   --------->At4g35610    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------LBD16             <---------MYB52(1) --------->MYB111(1) <----------DOF2                       <---------TGA1a                <---------MYB52(1)  --------->MYB46(2) ================================================bZIP_DOF            --------->LBD16      <---------MYB46(3) -------->HSFB2a(1)                    --------->ANAC58            <---------LBD16--------->ATHB12 ---------HSFC1(2)                     --------->ANAC46          --------->ARR14(2)     <--------P ---------HSFB2a(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) >ATHB12    <----------DOF2            --------->O2 ------->TEIL <---------ARR14(2)   <---------MYB46(3) -------->HSFC1(2) --------->DEAR3(1)  --------->TGA1a     <----------DOF2<---------At4g35610 -->At4g35610   <-----------GT1      <---------ALFIN1 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------MYB52(1)   gaactttcgttctcctttacaccgtcttcttcgtgactcacacgtcccggtacggacccctctttaagttccggtttgctgattttattggttagttagt  345600                                                                                          <---------AHL20(1)                                                                                          --------->AHL20(2)                                                                                          --------->AHL20(1)                             <---------YAB1                                        --------->ZAT6                             <---------AHL20(2)                              <---------ZAT6                             xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->WOX13(1)     <---------AHL20(2)                  <---------TOE1(3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->AHL20(2)                  <---------TOE2(3)               --------->AHL20(2)       <---------At5g28300      -                 <-----------RAV1(2)    <----------DOF2   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    xxx             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------AHL20(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         --------->WOX13(1) --------->AHL20(2) <----------DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <   agttaatgagccaattagttcaggtttatatataatagactactttcaacttttaattagtgtatgaggcaattagttacagttaagactaataaattgg  345700                                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                         --------->CCA1(2)                                                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                    <---------ZAT6                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  <-------TEIL  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------TOE1(3)                                  ------>ZmHOX2a(2)      <---------At4g35610     <---------ANAC58                                 <------ZmHOX2a(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------TOE2(3)                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                --------->ARR14(2)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxx            --------->TOE2(3)   <---------ARR14(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     ----------->GT1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------YAB1               ------->TEIL <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ANAC58  <---------GLK1(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -------->ICU4           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->ZAT6<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ARR11(3) ---------YAB1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ARR11(3)   tcatgattcttatatgttaatggtatctcatatggatccatttaagactagtgaatttcagcccatcttagtgtgatatggaggcctgttaagggtcttc  345800  Previous    Next  AGI:  At2g01800.1    Description:  COP1-interacting protein-related. similar to COP1-interacting protein-related [Arabidopsis thaliana] (TAIR:AT4G00580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42460.1) Range:  from: 343765    to: 345253    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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