Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  ------>MYB83                                ------>MYB46(1)                                  --------->ANAC46                              <---------MYB111(2)                              --------->ANAC58                              <---------MYB46(2)           <---------At4g35610 --------->ANAC46                             --------->ANAC46              --------->At4g35610 --------->ANAC58     <                           <-----------GT1    <---------ICU4              --------->ANAC58          -                --------->RAP2.6(2)       ------->TEIL------>MYB83        --------->ANAC58       <--- --->WRKY38(1)--------->At4g35610         <-------TEIL------>MYB46(1)     --------->ANAC46      ----- -AtLEC2      <---------At4g35610     --------------->AtSPL8      --------->MYB46(3)          <------   actcaaacaaaaactcagccgaactcaattcaccaaacttcatgtacatcattaccaactcagttgcaacaatcccaagacacccaaaaccatatttcac  232100                                      <---------At4g35610                                           -                                      --------->At4g35610                   <-------TEIL            -                                      --------->ZAT2                   --------->AHL20(2)           <                                      <---------ZAT2         --------->MYB52(1)                     -                              --------->ARR14(2)           <---------MYB52(2)      <------ZmHOX2a(1)- -------MYC3             =============================HOX2a_HOX2a    ----------->GT1             <--- ------>MYC3             <------ZmHOX2a(1)         <----------DOF2   --------->ANAC58            ==== ------ALFIN1            ==============================HOX2a_HOX2a   --------->ANAC58           <---- ---->ANAC46            ----------->GT1         ------>ZmHOX2a(2)  <--------P      ================== -----GT1           ----------->RAV1(1)        <------ZmHOX2a(2) ----------->GT1<---------ICU4  -----   cacatgggcatgaagagcaaacccacaggaaaaatccccaagctgagagatcgctttcaccacaaacgggtaagtaaattcatcaggacggacaccaaga  232200                                                                                                =====                                                                                              <------                                                                                         <---------ANAC46                                                                                         <---------ANAC58                                                                                         ------------                                                                                     <---------LBD16                                                                                     ------>ZmHOX2a(1)                                                                                  <------ZmHOX2a(2)                                                                                 <---------ARR14(2)             ---------->DOF2                                                     --------->ARR11(3) -------->ANAC55(2)                                                              <---------ARR11(3) -------->ANAC58                                  <---------SPL7                 --------->ARR14(3) ---------ANAC55(2)                              <---------ANAC58                <---------ARR14(3) -------->ANAC58                     --------->ZAT2                              <---------GLK1(2) -------->ANAC46                     --------->At4g35610     ---------->DOF2     --------->ARR14(2) ---ZmHOX2a(2)                       <---------At4g35610<----------DOF2         <---------HSFB2a(1) ==========================HOX2a_HOX2a           <---------ANAC58               --------->HSFB2a(1) -----ARR11(3)                  --------->DAG2  <---------TOE2(3)              ----------->ARR10<---- ===HOX2a_HOX2a     <------ZmHOX2a(1)<---------ZAT2 ------->TEIL   --------->ALFIN1------>ZmHOX2a(2)< ---->ARR11(3)--------->DAG2  ---------->DOF2   --------------->AtSPL3   ---------->DOF2 <---------ANAC58   tcacgcattttcttataaagtaggagactttcaaaagggagctggtttctaacgtaccctttgaaaagagtgttccaaaggaagatcctcggcttgtgca  232300                           --------->ANAC46                           --------->bZIP60(2)                  <---------ANAC58                           ----------->GT1                  <---------ANAC58                       <---------At4g35610                  --------->ANAC55(2)                    ----------->RAV1(2)                 <-------TEIL                            <---------ZAT2              <---------TGA1a                            --------->ZAT2              <---------ANAC58                           --------->At4g35610              <---------ANAC46                 --------->GLK1(2)         ----------->RAV1(2)<-----------HVH21  --------->ARR14(1)       <---------ALFIN1   ------->MYC3        <---------GLK1(2) =======================bZIP_DOF              <---------ARR14(2) ---ZAT18--------->ZAT2   <-------MYC3        <---------ARR11(3)                                ===== --------->WRI1<---------SPL7                 --------->ARR14(2)                                ----- ------DOF2   <---------ANAC58       <---------ICU4    --------->MYB46(3)    <----------DOF2   ------ ---------ANAC46--------->ALFIN1    <---------ATHB12----------->HVH21        <---------------AGL15   tttcgtcgaacacctggcgtgcgtaacacatgtcaccaataactacaagattctctaacagctgagttaaaagactgttcttttcagagaaacctgtcct  232400                       <---------At4g35610                       --------->At4g35610               ------>ZmHOX2a(2)                                                                 ----             <---------ARR11(3)                                                                  ----             <---------ARR14(2)                         --------->ZAT2                  --------->MYB52(2)             --------->ARR11(3)                <---------ANAC58                         <---------MYB46(3)             ------->TEIL                      <---------ANAC58                       <-------GAMYB        <---------AtLEC2  --------->At4g35610  <---------ANAC46                       <---------MYB52(1) =====================HOX2a_HOX2a        <---------ARR11(3)                         <---------ANAC46 ->ZmHOX2a(1)--------->ARR14(2)          --------->ARR11(3)                         <---------ANAC58 --->TOE2(3)<---------CCA1(2)     <----------DOF2      --------->ARR11(3)           <---------ANAC58   tagtacaatcgcatggatcttcttaagctgcttcggctttgaagaacttgctcgtaagagctcggagagcatttgttttgttaatggcgtttgtttcgca  232500                                                                                                   --                                                                                                   <-                                                                                                 ----                                                                                            <--------        <---------ANAC58                                                                    ---------        <---------ANAC58<----------DOF2                                ------------>CBF     <-------- <---------CCA1(2)  ------>ZmHOX2a(1)           <-----------GT1   ---------->DOF2          ---------- ----->ANAC58    ------>ZmHOX2a(1)       ----------->GT1       <-----------GT1        ---------->DOF2 ----->ANAC58------>ZmHOX2a(1)    <---------ANAC46          <---------ICU4      ------------>CBF <---   agcatctcttccgtccttcctccttactttcaagtgtcttaaaatgtaatatactcgtctgatttttacaaagcccaatttctacaataaaaggcctaat  232600                                                                               ------>NtERF2                                                                              --------->RAP2.3(3)                                                                              --------->DEAR3(1)                                                                             --------->RAP2.3(1)                                                                             --------->ATERF1(1)                 --------->AHL20(2)                                          <------NtERF2     ----------------->AGL2                                                  --------->ORA47(2) ------->ANAC55(2)        --------->MYB46(3)                                ------>NtERF2 --------ANAC55(2)   <-----------GT1                                        <---------ATERF1(1) ----->AHL20(2)  --------->AHL20(1)                                        <---------DEAR3(1) -MYB59          --------->ARR11(3)                                        --------->ANAC46 ------>AGL15    <---------ARR11(3)              ----------->HVH21       <---------ALFIN1        ---- -------AGL15    <---------AHL20(1)              <---------ATHB12        <---------ATERF1(1)    ----- ------->AGL1   --------->CCA1(2)            ------------>CBF        --------->At4g35610 <---------LBD16 ------AHL20(2)--------->ARR11(3)      ---------->DOF2      ----------->GT1--------->DEAR3(1) -------   taagtaagcccaaattagatatattacaacaactatgggcctaaagacccaatgacccaaaatcgtgaattagctcgacgccgactggatgttcggaaaa  232700                  <------------CBF                 --------->ATHB12                <---------AHL20(2)                                                                  <                --------->AHL20(1)                                             --------->AHL20(2)  <-         ------>MYB46(1)                                                      --------->YAB1---------       <---------MYB59                                                        --------->AHL20(2)   --      <---------ANAC55(2)                                            <---------ZAT6       <<<<<<<<<MYB98      --------->ANAC55(2)                                        <---------YAB1<---------AHL20(2)<---    <-----------GT1                                            <--------HAHB4 <---------AHL20(2) ---- ------->GT1    --------->AHL20(2)                         --------->ICU4------------>CBF----------->GT1 ---->DAG2      <---------AHL20(1)             <----------DOF2<---------YAB1  <---------AHL20(1)----- --->DOF2------>MYB83          <---------GLK1(1)    <-----------TBP  <-----------RAV1(1)----------->GT1   ggtttaatacctatctaattaattggatttttgatttctgtattaatgtcttttttttataagtattattagtgttgcaataaaattagtatgttaaaat  232800                                                                          <---------AHL20(2)    --------->AHL20(2)                                                   <---------AHL20(1)    <---------AHL20(2)                                                   --------->AHL20(2) ---------AHL20(2)                                                       <---------AHL20(2) --------AHL20(1)                                                        --------->AHL20(1) >AHL20(2)                                                               --------->ARR11(3) ------->AHL20(1)                     --------->ICU4                     <---------ARR11(3) ------AHL20(1)                <---------At5g28300                     ------->TEIL       --------->AHL20(2) ----->AHL20(1)               <-----------GT1             --------->AHL20(2)             <---------MYB52(1) ---->AHL20(2)       <-------TEIL --------->At5g28300     <---------AHL20(2)  --------->YAB1   atatattttaatccagccctatattcatctatttactgtaatttttgtattcatctatattttaatatgtatgaatatatttataaattccattaatttc  232900                                    --------->YAB1                                    ----------->GT1                                    --------->TOE2(3)                                    --------->TOE1(3)          --------------->AtSPL8                   --------->ARR11(3)                          <---------------AtSPL8                   <---------ARR11(3)                        --------->YAB1  <---------ICU4           <------MYB46(1)        --------->GLK1(2)          --------->MYB52(1)       <--------------           <------MYB83          <---------GLK1(2)           <---------ICU4  --------->ATHB12          --------->MYB111(1)---------->DOF2                <---------AHL20(2)     <----------DOF2          --------->MYB59 --------->TOE1(3)                 <---------ATHB51--------->ICU4         <-  --------->AHL20(2)      --------->TOE2(3)         --------->MYB46(3)  --------->AHL20(2)      <----   ttaagaaaatagtaggtccaatatcatgccttaaagaatcttaaaaatagtagaaccacaaaataatggtacaaaaaaatgatttcttttgttttgtttt  233000  Previous    Next  AGI:  At2g01510.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42293.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 230751    to: 232505    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version