Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <-----------RAV1(2)                --------->ATERF1(1)                                      ----------->HVH21                <------NtERF2                                        <---------ZAT14               --------->LBD16                                       --------->ZAT14               <---------At4g35610                                   <---------ZAT18               --------->At4g35610                          --------->At4g35610              <-------              --------->DEAR3(1)                 --------->DAG2    --------->ANAC46    <---------ARR11(3)              --------->RAP2.6(2)              ---------->DOF2   --------->ZAT6        --------->ARR11(3)  <---------ARR14(3)                  --------->LBD16    <---------ZAT2<---------At4g35610   --------  --------->ARR11(3)                 --------->HSFB2a(2) <---------At4g35610   ------->TEIL  <-------  <---------ARR11(3)                 <---------ANAC46<---------REM1(1) --------->At4g35610   -------- -------At4g35610                    <---------HSFB2a(2) --------->At4g35610<---------WOX13(1) ------>At4g35610--------->DEAR3(1) <---------LBD16  --------->ALFIN1--------->ZAT18  <---------CCA1(2)   agaagacctcgtttagccgcagacgttttcgacttacttccggatgatcaaaagggtgtagctgcttacactgcgctgatggatgtttatatctcagcag  173900                    --------->ARR11(3)                --------->YAB1          --------->ANAC58<---------ANAC55(2)    --------->LBD16 <---------ARR11(3)  <---------ZAT14   <---------ARR14(2) --ZAT2   --------->ANAC58<---------YAB1 ->At4g35610   --------->ICU4 --At4g35610   <---------ATHB12--------->CCA1(2)          <----------DOF2 ->ZAT2 ---------->DOF2 <-----------GT1        --------->ARR11(3)  --------->TOE1(2)   ggagtccagagaaagcaatgaagatattacgagagatgagagagcgagagataatgccttctttggggacatacgatgttctattgtctggccttgagaa  174000                                                                       --------->LBD16                                                                       --------->HSFB2a(2)                                                                   <---------ARR14(2)                                                                   --------->ARR14(2)                                                                 ------->MYC3                          <---------MYB46(3)                     <-------MYC3                        <-------GAMYB                            ------->MYC2                       <---------ANAC58                          <-------MYC2                       <---------ANAC58                         --------->ANAC58                    --------->ALFIN1                            --------->ANAC58          <---------HSFC1(1)                                   ------->TEIL          --------->HSFC1(1)         <------ZmHOX2a(1)  <---------ANAC58          <---------HSFB2a(2)    <------ZmHOX2a(1)      <---------ANAC46                            -          --------->HSFB2a(2)  <---------TOE2(3)        <---------ANAC58         <-------TEIL       <      --------->GLK1(1)<---------ANAC46            <-----------RAV1(1) <---------HSFB2a(2)<----------ID1   aactagtgatttccagaaggaagtggcgttgttgaggaaggagaagaagagtcttgttgcttctgcacgtttccgagaaaatgttcatgttgaagacaaa  174100                                           <---------At4g35610            <----------DOF2           <--------P                                               ------      ------>ZmHOX2a(2)  <-----------RAV1(1)   ---------->DOF2                                 <-----    <---------ARR11(3)   ============================RAV                                       <-----    --------->ARR11(3)--------->GLK1(2)    --------->At4g35610     <---------AHL20(2)      ------>NtERF2 -------->ANAC55(2)   <---------ARR14(2) <---------ANAC46   ------->TEIL          <---------AHL20(2) ---------ANAC55(2)   --------->ARR14(2) <-----------RAV1(2)<-------TEIL         --------->AHL20(2)   atatgtgatcttctctttgctacaaatctgttgtaatctggttgcaggtgaaagtcaacatgtacatgtttaatctaggcccattaaatatgaggcctat  174200                                                                                                   --                                                                                                  <--                                                                                                  ---                                            --------->AHL20(2)                                   ----                                        --------->AHL20(2)                                       <---                                        <---------AHL20(2)                                      -----                                       --------->AHL20(2)                                       <----                                    <---------YAB1                                          ---------                                   --------->AHL20(1)                                     <---------At4g35610                                   <---------AHL20(2)                                 <---------MYB46(3)                                  --------->YAB1            <------------CBF         ================                               --------->YAB1             <---------AHL20(2)        <-------GAMYB<---                               <---------ICU4--------->AHL20(2)                     =================                              <---------YAB1<---------AHL20(1)         <---------YAB1<--------P<-----                           <---------YAB1   <---------AHL20(2)        *TSS<---------WOX13(1)---------                           <---------AHL20(2)<---------AHL20(2)<-----------GT1     <---------MYB46(3) --->ARR14(2)        <---------ICU4<---------AHL20(1)     --------->AHL20(2)    ===================== ----ARR14(2)       <---------YAB1--------->AHL20(2)      <---------AHL20(1)    ------------>AtMYB77< ----ZAT14        --------->YAB1 <---------YAB1           --------->AHL20(1) <---------GLK1(2) ======   actgtttttaagcccattactcatcattttttattattatatttaatttaatttcttcattttattgacatttctgatagattagcggttgctactgacg  174300                                                                                               ------                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                             <-------                                                                                             --------                                                                                             <------NtERF2                                                                                            <--------                         <---------------AGL15                                              ------>NtERF2                         <----------DOF2                                                    <-------- ------->LBD16          <-----------------AGL2                                              <-------- -------ANAC46          <-----------------AGL3                                              <-------- ------>DEAR3(1)        <-----------------AGL1                                              <-------- ----->ATERF1(1)       <---------ZAT18                                                      <-------- ---NtERF2             --------->ZAT18                                                     <---------DEAR3(1) ->NtERF2           <---------ANAC58                                                       <---------RAP2.3(2) -----RAP2.3(1)     ------>ZmHOX2a(2)                                                      --------->DEAR3(1) -->TGA1            <---------ANAC58                                                      --------->ATERF1(1) ====MYC_MYB       <------ZmHOX2a(2)                                                      --------->RAP2.3(1) ------LBD16      --------->ARR11(3)                                                     <---------ATERF1(1) ====MYC_MYB      <---------ARR11(3)                                                    --------->ANAC46 ----TGA1a    <---------ANAC58                                               --------->TOE2(3)------- -->HVH21--------->CCA1(2)                           <----------DOF2        <---------ANAC55(2)------ ====MYC_MYB  <---------ANAC58                  ------>ZmHOX2a(2)<---------LBD16       <---------At5g28300 ------NtERF2 <---------ANAC46       ----------->RAV1(2)      ----------->HVH21        <---------LBD16 ===================================bZIP_DOF   <---------At4g35610 --------->LBD16    <-----------GT1   ccggagaagagagatggcgagatcgtgctctatctggacacctgttttgatctcactttcaccagtgaccggagaatcacctaaaatttcacggcgccgg  174400                                 <---------ANAC58                                 <---------ANAC58                                --------------->AtSPL8 --->LBD16                      --------------->AtSPL3 ----MYB46(3)                   <-------TEIL -----RAV1(2)              <-----------RAV1(2) ---ANAC46                ------>ZmHOX2a(1) --LBD16              ------>ZmHOX2a(2) ->ATERF1(1)         <------ZmHOX2a(2)                      <-------TEIL -ATERF1(1)          --------->GLK1(1)                     <------ZmHOX2a(2)      <---------LBD16 -RAP2.6(1)          <---------GLK1(1)                    --------->ARR14(2)     <---------ANAC58 -RRTF1(1)          --------->ARR14(2)                    --------->ARR11(3)     <---------ANAC46 -ERF1              <---------ARR14(2)                    <---------ARR14(2)     <---------ANAC58 -DEAR4(2)          <---------ARR11(3)                    <---------ARR11(3) <----------DOF2 -RAP2.3(1)         --------->ARR11(3)                   --------->GLK1(1)   <---------------AGL15 -->DEAR3(1)        <-----------ARR10             <----------DOF2     --------->MYB52(2)     <------- >NtERF2           <------ZmHOX2a(1)            --------->At4g35610 <---------MYB52(1)      ---------   gtgattttagccacaagtataggatctcctcaggttcgtacaagtacaacagctttcgaagatccatatagttagttttcttttcgtggagaaatatgtt  174500                                                                                   --------->GLK1(2)                                                                                  --------->ARR11(3)                                                                                ----------->ARR10                                                                                <---------TOE2(3)                                                                           <---------MYB46(3)                                                                       <-----------RAV1(2)                                                                      <-------TEIL<---------ARR11(3)                                     <<<<<<<<<RAP2.2      <----------DOF2<---------At4g35610   <---------ANAC46       <----------DOF2  <---------At4g35610       --------->GLK1(2)<---------YAB1 ----RAV1(1) <---------ATHB12       <---------TOE2(3)    <---------ANAC58--------->At4g35610 >ARR11(3) --------->WOX13(1)  <---------TOE2(3)         <---------ANAC58<---------ZAT2      <-------   gtgctatgtgtgtcaatgaattcgtagccttttaagtttagattgagctattagagattgctttctcagagattcagctgttgagattttgattcctttt  174600                                                              <---------WRKY38(1)                                                             --------->WRKY18(1)                                                           <------MYB46(1)                                                           <------MYB83                                                        <---------ANAC58                                                        <---------ANAC58                                                       --------->ATHB12                                                     <---------WOX13(1)                     <---------ICU4                --------->ATHB12                   --------->GLK1(2)               <---------ICU4                <---------TOE2(3)               <---------At4g35610     ----------->HVH21<---------ANAC46         <---------YAB1 ---DOF2    <---------ZAT18     <---------AtLEC2  <---------YAB1       >>>>>>>>>TBF1   taagcctaaacttgtgcagataatcttttcatttgtatggtctgacagatttatgattgcttggtcaatagaagaagaagattaatattgagtctgcatt  174700                                                                                          <---------HSFC1(2)                                                                                          --------->HSFC1(2)                                                                                   --------->TOE2(3)                                                                                   --------->TOE1(2)                                                                                <---------ARR14(2)                                                                             --------->ANAC58                                                                          <------ZmHOX2a(2)                                                                          ===========================                 <---------ARR11(3)                                      <---------ARR11(3)                 --------->ARR11(3)                                    --------->ICU4  <---------At4g35610                <---------CCA1(2)                            <---------ANAC58--------->ANAC58      --------->MYB46(2)                              <------NtERF2  ---------->DOF2 <-----------RAV1(2)      --------->MYB111(1)                      <----------DOF2  ---------->DOF2 --------->ARR14(2)      --------->MYB52(2)                 <---------ANAC58    <---------ANAC58--------->ANAC46    <---------MYB52(1) --------->ZAT14   <---------ANAC58<----------DOF2 --------->ARR11(3)   ggttttgttagttagtgtatatctctgaagtcagtctcttatgccttgtctttggcagcctttacttgaagcaaagatcaaggaacctcagaagcttcaa  174800  Previous    Next  AGI:  At2g01390.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22908.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 172255    to: 174136    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g01400.1    Description:  unknown protein Range:  from: 174270    to: 175616    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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