Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <-----                                                                                               ------                                                       --------->ZAT6                         -------                                                     <-----------GT1                          -------                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->LBD16                                                <---------AHL20(2)                    --------->ARR14(2)                  --------->TOE2(3)           --------->AHL20(2)                      <---------ARR14(2)                  <---------MYB59            <---------AHL20(1)                      --------->RVE1(1)         --------->YAB1                      --------->AHL20(1)                      <---------GLK1(1) ------TOE2(3)   <---------ANAC55(2)        --------->AHL20(2)  <---------ARR11(3)   --------->CCA1(1) -YAB1--------->YAB1              <---------YAB1--------->AHL20(2)     --------->AHL20(2)--------->ANAC46   agattgaataatcaaaaatacctaaaataccaaaatatacttgaaaatatatatataacaccacaatatccaaaaaaatactcgaaaatatccgaaatat  171900                                                                ------>MYB46(1)                                                                ------>MYB83                                                                --------->MYB52(1)                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                              <---------MYB111(1)                                                              <---------MYB59                                                         <---------ANAC55(2)         --------->ARR14(2)                              --------->ANAC46         <---------ARR14(2)                             --------------->AtSPL3        --------->RVE1(1)                               <-----------------------TaNAC69(2)        --------->CCA1(1)                               --------------->AtSPL8        <---------GLK1(1)                            ------>MYB46(1)                                -    --------->AHL20(1)                             --------->AtMYB61                                -    <---------AHL20(2)              ------->GAMYB <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             -    --------->AHL20(2)           --------->MYB52(1)<---------MYB59                               <--- ----ARR11(3)        ------>ZmHOX2a(2)          <<<<<<<ZML2   <---------MYB46(2)            <-------- --->ARR11(3)       <------ZmHOX2a(2)     --------->ARR11(3)--------->SPL7            --------->ARR14(2) -->CCA1(1)        --------->ARR11(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------ARR14(2) -->RVE1(1)        <---------ARR11(3) ---------->DOF2------>MYB83                 <-------TEIL   ----   ctgaaataaaatatccgaatagatcccaaacttcataaccgaaagaactagaaccaaacccgtaccaaactgaaactgtttcggttcatatatggattct  172000                                                          <---------ZAT2                        <----                                                        <-----------RAV1(2)               <---------YAB1 -------->ANAC58                                    --------->ANAC58                  <---------DAG2 -------->ANAC46                                    --------->ANAC58                  <----------DOF2 -------->ANAC58                                   --------->SPL7               --------->TOE1(3) <-- ------ZAT14                               --------->ARR14(2)            --------->AHL20(2) <-------- -GLK1(2)                                  <---------ARR14(2)            --------->YAB1   <---------AHL20(2) ----->ZAT14      --------->YAB1           ---------->TaMYB80  ------>ZmHOX2a(1)--------->TOE2(3)<---   acactcaaaaaccgaaggaatcggaatccaactaaaaccgaagcgaatacccgaacgcccaggtcctaagtcaaattataaaccctaactttataattgt  172100               --------->ARR11(3)          <---------ANAC58          <---------ANAC58      --------->CCA1(2)      --------->ARR14(1)     --------->ARR11(1)     --------->ARR14(2)     --------->ARR11(3)     <---------ARR14(2)     <---------ARR11(3)     <---------GLK1(2)                     --------->ARR11(3) ---------->DOF2                           <---------ARR11(3)        --------->MYB52(1) -----TOE2(3)  <---------ARR11(3)          <---------GLK1(2)     --------->AHL20(2) -----GAMYB  ----------->ARR10       ------->TEIL         <---------ANAC58  <------NtERF2 ----CBF  <---------ANAC46<---------AHL20(2)              <---------ANAC58 ------>NtERF2---------->DOF2 ------MYB46(3)<---------GLK1(2)<----------DOF2         <-----------GT1   <---------ANAC46   <-------   ggttaaagatttgcttagatttttgaatttttttctttgaatctagatttttgaaattttacttgaataaaaaacggcgtcttattcaaacaaagctttc  172200                                                                             <---------ALFIN1                                                                         --------->LBD16              <------MYB83                                              --------->ANAC58              <------MYB46(1)                                           --------->ANAC58      --------->ZAT14                                                   --------->ANAC55(2)      <---------ZAT14                                                   --------->ANAC46    --------->ANAC46                             <-------TEIL          <---------LBD16             -- ---DOF2    <--------P  <------------CBF   ---------->DOF2         --------->At4g35610            ---   taatacactgcaaggttggagtttagaattggttatctctctgggcaaagcttcatgcgcttctctagcatcttccgcaataccccaatccaattctcca  172300               --------->ANAC58               --------->ANAC58                          --------->ANAC58             ---------->DOF2                             --------->ANAC46            --------->WRKY18(1)                          --------->ANAC58           <-----------HVH21                       ------>MYB83      <---------At4g35610                          ------>MYB46(1)      --------->At4g35610                        <---------ALFIN1      --------->ZAT2                             --------->MYB46(3)      <---------GLK1(1)                          <---------MYB55(2)      --------->GLK1(1)                          <---------MYB111(1)      <---------ZAT2                             --------->AtMYB61     <-----------ARR10                           <---------MYB111(2)    <------NtERF2                               --------->MYB46(3)   --------->LBD16    <---------ZAT14          ------>MYB83  --------->DEAR3(1)  <---------ZAT18          ------>MYB46(1)                                      - <---------LBD16      --------->ZAT14         --------->ANAC46--------->GLK1(2)                     - ----->GAMYB<---------MYB52(1)    ------>ZmHOX2a(1)-------->P<---------GLK1(2)                      - ------>MYB46(3)    --------->REM1(1)        --------->MYB46(3)                   ----------->GT1   -   atcgccggagctccgtcaagctacttcactctcttcctcgtctaaaacccaccaactccaagcgattctcccaaaaacccaaacttgtgaaaacacagac  172400       >>>>>>>>>>>>>>>>>LFY       ------>ZmHOX2a(2)      <------ZmHOX2a(2)     <---------ARR14(2)     --------->ARR14(2)                                      <---------------AGL15          <--------     <---------ARR11(3)                                      --------------->AGL15     --------->At4g35610 ----->MYB46(1)                                      ------>ZmHOX2a(1)      --------->At4g35610 ----->MYB83                                        --------->TOE2(3)       <---------At4g35610 -------->MYB52(1)                      <---------ARR11(3)  <-----------------AGL3     --------->ZAT2 ------->P        --------->ANAC46   ----------->RAV1(1)    <-----------------AGL1     <---------At4g35610   cctaccagatcccagtgtttacacaagagacattgtatccaacatctataacatcctcaagtactccaattgggactctgctcaagaacagcttccacat  172500             --------->ARR14(2)             <---------GLK1(2)       <---------At4g35610       --------->At4g35610             ---------->DOF2                                        <------     <-----------RAV1(2)           <---------ANAC58                            ----------->RAV1(2)    <------NtERF2                  <---------ANAC58         ---------->DOF2    <---------At4g35610   ------>NtERF2              ------->GAMYB   <---------ARR14(2)<---------ANAC58       --------->At4g35610   <-----------HVH21        <---------At5g28300   ------>ZmHOX2a(1) ---------->ID1   <---------DEAR3(1) <------NtERF2            --------->MYB46(3)  --------->ARR14(2)<---------ANAC58    <---------At4g35610 -ALFIN1     <---------ARR14(2)    <---------ANAC46  --------->At4g35610<----------DOF2<---------At4g35610   ctcggcgtcagatgggattctcacattatcaaccgtgtcttgaaagcacatcctccgatgcagaaagcttggctctttttcaactgggctgctcaaatca  172600                                                        <---------SPL7                  <---------ZAT14                   --------->GLK1(2)                  --------->ZAT14                 ---------->DOF2                                 <--                --------->bZIP60(2)          <---------LBD16                                      ===                --------->ANAC46         <---------ARR11(3)                                  <-------              --------->AtMYB61          --------->ARR11(3)   <---------ARR14(2)         ------------              <---------ALFIN1           --------->ARR14(2)   --------->ARR14(2)      <-----------GT1          --------->ANAC58              <---------GLK1(1)<---------MYB52(1)         <-----------GT1 ---ATHB12--------->ANAC58              <---------CCA1(2)<-----------HVH21 ------->TEIL  <---------DAG2   agggtttcaaacacgaccacttcacttataccaccatgctcgatatcttcggagaagccggtcggattcaatccatgtactctgtttttcaccttatgaa  172700                     ----------->GT1                 <---------ARR14(2)                                 --------->ALFIN1                 --------->ARR11(1)                               <---------ANAC46            <------ZmHOX2a(1)         <-------GAMYB                                            <---------bZIP60(2)   <---------ANAC46      --------->ALFIN1--------->At5g28300                      ----------->HVH21      --------->ALFIN1 ----ZmHOX2a(1)------>ZmHOX2a(2)                             --------->LBD16         --------->ALFIN1 =====================HOX2a_HOX2a                          <---------LBD16        <---------TOE2(3) --YAB1 --------->ALFIN1  <---------ANAC46              <---------ZAT2          <---------ATHB12----- --->AGL15    <---------WOX13(1)                        --------->ZAT2<---------AtLEC2<---------MYB46(3)   ggagaagggtgtgttgatcgatacggtgacttatacatcgctgattcactgggtttcaagctccggtgatgtggatggagcaatgaggttgtgggaggag  172800  Previous    Next  AGI:  At2g01390.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22908.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 172255    to: 174136    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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