Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       <-----------GT1                                                    <-------TEIL                                                  <---------ARR14(2)                                      <---------ETT(2)     <----------DOF2             ------->MYC3                                      --------->ETT(2) <---------ALFIN1                <-------MYC3                                     --------->DDF1--------->CCA1(2)           <----------DOF2                         ---------->DOF2          --------->ARR14(2)      ---------->ID1 ---->TEIL      ----------->GT1 <---------YAB1  ----------->ARR10       <-----------RAV1(1)   aatctttaaacttgtatatggaaactagaaagttatgatgtcgactagtgaagattcacacctttagaaatgttttgttgtctttcccatatgcaatctc  128900                        --------->ATHB12                          --------->ZAT6                        -------->ATHB1                   <---------WOX13(1)                        <---------ICU4             --------->ARR14(2)                       <---------ATHB12            --------->GLK1(2)          --------->ALFIN1    <--                       <---------YAB1              <---------ARR14(2)   <---------HSFB2a(2)      ----                    ------------>ATHB5            <---------GLK1(1)     --------->HSFB2a(2)      <---           --------->At4g35610                    --------->GLK1(1)    <---------LBD16   ============           <---------GLK1(1)                 --------->ALFIN1   <-----------GT1        ----------->RAV1(2)         <------ZmHOX2a(1)             <----------DOF2   <--------P   ----------->RAV1(2)------>ZmHOX2a(1)   atagagcatgaggagatgcccctccatcattgaaaacaaggctttaagtggggaatctggttgatttaactcttctggagttggaggtctcctgtgtaag  129000                                                                        <---------MYB46(3)                                                                        --------->MYB111(1)                                                                        --------->MYB59                                                                        --------->MYB46(2)                                                                        --------->MYB111(2)                                                                     <------MYB46(1)                                                                     <------MYB83                                                            --------->ALFIN1                                                          <---------O2 <---------MYB55(1)                                                          ======================MYC_MYB                                                          <---------ANAC46                                                          <---------TGA1a<------MYB46(1)                                                          <---------ANAC58        ----------->GT1                                   <---------ANAC58    --------->ATHB51                                      --------->TGA1a<------MYB83    --------->ATHB12                                      =======================================bZIP_DOF   <---------YAB1         --------->ARR11(3)              --------->O2 <--------P --------->ANAC55(2)<---------ANAC55(2)              ---------->DOF2--------->MYB59 <---------ANAC55(2)--------->ANAC55(2)              ===============bZIP_DOF ----ZmHOX2a(2)  <---------MYB52(1)               ----------->GT1<---------ARR14(2) ----->ARR11(3) --------->TOE1(3)             <---------AHL20(2) --------->ARR14(2) ------ARR11(3)----------->GT1            <---------ZAT6  <---------ANAC55(2)         ---------->DOF2 ====HOX2a_HOX2a--------->TOE2(3)         ----------->GT1 <---------ANAC55(1)   ----------->GT1   atcacataattggtgaaacgttaagtaagagctagctctatctactgttatattgtaaagacgtgtgtatttggtaggtaccgagtgaaaaagacttctc  129100                                                          <---------ARR14(2)                                                          <-----------ARR10                                                          --------->ARR14(2)             --------->ARR14(2)                                              --------->At4g35610             --------->GLK1(1)                                ----------->GT1       --------->At4g35610     ------->TEIL          -                    <---------KAN4(2)         <---------At4g35610   --------->ZAT2       <---------ARR14(2)         ---------->DOF2       <------ZmHOX2a(1)   ---------->DOF2  <---------At4g35610 <------ZmHOX2a(1)   cgaacttggcccaaaggaagagaatgagcatgaggagtaacaagattgagcagagaagcggaactaatcgagcttccatgaactccaagaggaaccagaa  129200                                                                 --------->REM1(1)                                                        ------>ZmHOX2a(2)                                                       <---------At4g35610                                                       <------ZmHOX2a(2)                                                       --------->CCA1(2)                                                      <---------ARR14(2)                                                      --------->ARR11(3)                      <------                                                      <---------AGP1                    <---------AHL20(2)                                                      --------->ARR14(2)               <---------YAB1                                                      --------->AGP1              ----------->GT1   -                                        ------>ZmHOX2a(1)   --------->ZAT6     <------------CBF -----                                        ======================HOX2a_HOX2a   ------------>CBF---------                                     ---------->ID1   <---------ARR11(3)   ----------------->AGL1----               <---------ZAT6  --------->ARR11(3)   ----------->ARR10      ========================== -------->ALFIN1        --------->LBD16 =======================HOX2a_HOX2a ----------------->AG------   gagtgtggccattacaagtgttatccctgagtttatcttgtccttccacagacatagatctgccactacaacaacattcccaattggttattaatcgtaa  129300        <---------MYB52(1)        <--------P       <---------MYB52(1)       <-------GAMYB --------->DAG2 ---MYB52(1)                            ------>ZmHOX2a(1) --------->DOF2             <---------ARR11(3) ---->DAG2                  <---------GLK1(2)         >>>>>>>GRF7                                  -- >YAB1<---------DEAR3(2)  ----------->ARR10        <-----------HVH21                       <---------AtLEC2 ------->GT1       <----------DOF2     --------------->AGL15                         <------------CBF ======================================================MADS_MADS--------->YAB1      <------ZmHOX2a(1) --->SPL7 --------->MYB52(2)--------->ARR11(3)  <---------GLK1(2)               ---------->DOF2   <--   ggtaaagccggttagtctcttctttgaatagattttgttttcctctacaagaatgtcaggtcttaatcatattctactaagtgaaaggattgtgcatgga  129400                                                                                          <---------YAB1                                  <-----------GT1                                       --------->YAB1                               <---------bZIP60(1)                                     <---------YAB1                --------->ANAC55(2)    --------->At4g35610                           ----------->GT1            --------->YAB1     --------->TGA2(1)                                     <---------ANAC46         <---------ICU4        --------->bZIP60(1)                            <---------ANAC58         --------->YAB1        <---------REM1(1)                              <---------ANAC58   ----     <---------AHL20(2)     --------->ICU4                                   <---------MYB46(3) -----     --------->AHL20(2)   --------->YAB1                                    <---------YAB1--------->ICU4 ------->YAB1   <---------ANAC55(2) ----------->RAV1(2)                     <---------TOE2(3)   ----- -----TEIL <---------YAB1 <---------ICU4   <---------ALFIN1  ------>ZmHOX2a(2)<-------GAMYB<---------ICU4   ttcatatttaaaaatgataagtatttgataatgatgtaacctgctccatcgccaagtatttgatccacaagagacattttggttgtgttgtgataattcc  129500                                                                   --------->AHL20(2)                                                                   <---------AHL20(2)                                                                  --------->AHL20(2)                                                              <---------AHL20(2)                                                             <---------AHL20(2)                       <---------AHL20(2)                    --------->AHL20(2)                      --------->AHL20(1)                 <---------AHL20(2)            <---------GLK1(1)                         <---------AHL20(2)      ---------->DOF2 --------->AHL20(2)             <-----------TBP          --------->AHL20(2)  <--   --------->TOE2(3)  <---------AHL20(1)       --------->YAB1--------->YAB1   <---------AHL20(2)  <-- -->ZmHOX2a(1)   ------------>CBF              <---------LBD16--------->AHL20(2)     --------->ARR11(3) ---->TOE1(3)<---------ARR14(2)           ------------>CBF--------->YAB1     --------->AHL20(2)<----- ---->TOE2(3)--------->ARR14(2)          --------->ANAC46<---------YAB1<-----------GT1 ------>ZmHOX2a(2)   ttaattcttaaaggagacctgcaatataatctccatagaccatactcaatcgggattttataattaaaataaatcaccatttaatttgatctcttcttaa  129600                                                                           >>>>>>>>>>>>>>>>>LFY                                                                  --------->MYB46(3)                        <---------ZAT6                        <---------AHL20(2)      <-----------RAV1(1)                         <---------YAB1<-----------GT1 <------------------------ANAC81                 >>>>>>>>>>>>>>>>>LFY     --------->YAB1 -------DAG2<---------ANAC58                    --------->YAB1--------->AHL20(2)      <---------ANAC58 --------DOF2    <----------DOF2      <---------AHL20(2)  --------->AHL20(2)          <---------ANAC58 ------GT1  <---------ANAC58          --------->AHL20(2)  <---------AHL20(2)<---------YAB1   ctttttttttgttggcatgctttttagtcttaactcttaattaaaaacaataaccattgtttaatttaacaaacaataaccattgttggcatgttcacat  129700                                                            --------->ARR11(3)                                                            <---------ARR11(3)                                                          <---------AHL20(2)            <---------ANAC55(1)                        --------->AHL20(1)            <---------ANAC46                           <---------AHL20(1)            <---------ANAC58                          <---------AHL20(2)            --------->ANAC55(2)             <---------AHL20(2)            <---------ANAC55(2)             --------->AHL20(2)            <---------ANAC58    ----------->RAV1(1) --------->AHL20(2)              --------->YAB1           <-------TEIL      --------->ANAC58      <---------AHL20(1)               <--------HAHB4          --------->CCA1(2)  --------->ANAC46     --------->AHL20(2)               <---------YAB1       <---------YAB1        --------->ANAC58   --------->AHL20(2)         <---------YAB1   <--------    --------->ICU4 <----------DOF2     <-------TEIL--------->AHL20(1) <-----------GT1 <---------YAB1   ttagagatgatgatacgtgttctttttattcatgccacaaattcatttaaaaatatatatattatcttctattcactattaatctattattaatacgatt  129800  Previous    Next  AGI:  At2g01240.1    Description:  reticulon family protein (RTNLB15). similar to reticulon family protein [Arabidopsis thaliana] (TAIR:AT3G10915.3); similar to reticulon family protein [Arabidopsis thaliana] (TAIR:AT3G10915.2); similar to unknown [Picea sitchensis] (GB:ABK26525.1); contains InterPro domain Reticulon; (InterPro:IPR003388) Range:  from: 128439    to: 129255    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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