Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           <---------At4g35610                                                         --------->At4g35610                                         <------ZmHOX2a(2)                         --------->HSFC1(2)            --------->ZAT18                  <---------ZAT2  ------>ZmHOX2a(1)    <---------ZAT18                --------->ZAT18   ==============HOX2a_HOX2a           <---------ANAC46    ------>ZmHOX2a(1)    --------->TGA1a                             -----          --------->ATERF1(1)  =================HOX2a_HOX2a                                     <----          <------NtERF2  <---------HSFC1(2) --------->At4g35610                   --------->AHL20(2)- -------->ARR14(2)--------->ZAT2----------->RAV1(2) <---------TGA1a               <---------AHL20(2)- ---------GLK1(2) <---------At4g35610   --------->ARR11(3)           <-----------GT1            ----- ---------ARR14(2)--------->At4g35610   <---------ARR11(3)    --------->YAB1--------->ANAC46---------   cagatttgtggaggcgagggagctggagacttcctcctgcaagatcagaagcacaagtgagctatcacattgaactatccacaattaatctctcagaaga  30428600                 <------MYB83                 <---------MYB46(3)                <---------MYB46(3)                <---------DEAR3(1)                      ----------->GT1                <---------AtMYB61                 --------->ANAC58               <---------MYB52(1)                 --------->ANAC46              ==============================================MYC_MYB          <-----------GT1                         --------->ANAC58     <---------GLK1(2)   --------->YAB1           ----------->HVH21  <---------MYB59<------MYB46(1)                  --------->TGA1a ----------->RAV1(2)   <---------WOX13(1)         --------->O2             ---------->DOF2 ---------->AtSPL8    >>>>>>>>>GATA-1             =================================bZIP_DOF       <-- -----------AtSPL8    >>>>>>>>>GATA-3          --------->ZAT18  <---------YAB1                  ----- ------>TEIL  <-------GAMYB<---------YAB1   --------->ANAC58 --------->ARR14(2)                 <---- -------->MYB52(1)    >>>>>>>>>GATA-4       --------->ANAC58 <---------ARR14(2)               ------- ---------->AtSPL3    >>>>>>>>>GATA-2   <------ZmHOX2a(1)  ----------->ARR10          <-----------GT1 >At4g35610<---------At5g28300   --------->At4g35610   ----------->GT1  <----------DOF2       <------   agtacctgattcttaccgttggtggattgatgatcagttcaaggacaagcacacgacagggaaaatatgcttagctttaaaggagaaattactcactgta  30428700                <---------ANAC58                <------MYB83  --------->GLK1(1)                <---------ANAC58                <------MYB46(1)                <---------ANAC46               --------->MYB46(2)               --------->MYB111(1)               <---------AtMYB61       <---------TOE2(3)      <---------GLK1(1)               <---------ANAC58 ---------RAV1(1)        <------ZmHOX2a(1)          <---------ANAC58 ---->ZAT14    <---------MYB46(3)                   <---------ANAC58 -----ZAT14 --------->ATHB12<------ZmHOX2a(1)   <---------ANAC58                        ------>NtERF2 -->ZAT14>>>>>>>>>ARR2<-----------RAV1(2)       <---------ANAC58                      ----------->HVH21 ---ZAT14>>>>>>>>>ARR1<---------LBD16  --------->YAB1         <---------ANAC58  ---------->DOF2   ctgtggtataagattgtttggtgttcaggaggaattcccaaacataagtttcttacttggctattcgtgttgaataggtgtccaaagcgcgaccgattga  30428800                    ------>ZmHOX2a(2)                   <------ZmHOX2a(2)                   --------->CCA1(2)                  <---------AGP1                  <---------ARR14(2)           <---------At4g35610                  --------->ARR14(2)           --------->At4g35610                 <---------GLK1(1)           <-----------RAV1(2)                ----------->ARR10           <---------At4g35610               <---------ZAT18           <---------AtLEC2      <----------DOF2                              --------->ZAT18     <---------ANAC46           <---------ANAC58                          <-----------GT1     <---------ANAC58           <---------ANAC58   ---------->DOF2   <----------DOF2           <-----     <---------ANAC58     --------->ALFIN1  --------->ZAT14          <---------DAG2            ------  --------->ALFIN1<---------ARR11(3)        <---------ZAT14   ------>ZmHOX2a(2)   <----------DOF2   acaagtggggtttgcaagtagatccgaagtgtttgctttgtgctactgcagatgaaagtcgtgatcgtctcctttttgactgcccttttagttggacgat  30428900                                        <------ZmHOX2a(2)                                       <---------ARR14(2)                               --------->ZAT14          --------->CCA1(2)                               <---------ZAT18   <------NtERF2                             --------->ANAC58   <---------DEAR3(2)                             --------->ANAC58  --------->ETT(1)                          <---------MYB46(3)                             --------->ANAC46  <---------DEAR3(1)                     <------------CBF                          <---------ATHB12    <---------ORA47(1)                     --------->ATHB51                 <-------GAMYB <---------ZAT14--------->RAP2.6(3)                 --------------->AGL15 <---------GLK1(2)      --------->WOX13(1) ------>ZmHOX2a(1)                      <---------------AGL15 ----ARR14(2)   <---------DEAR3(1)     --------->ARR14(2)   --------->ANAC46   *TSS  --------->ATHB12 --->ARR14(2)   <---------MYB46(3)     --------->ARR11(3)<---------REM1(2)     --------->YAB1   ttggaatctcatcgctcgtcgttgctcaatcactccactacgatcctggtcggcaacgatacacggtctaactatgttcaattacaactattggttatag  30429000                           <---------YAB1                         <---------AHL20(2)                   <---------At4g35610                     <---------DAG2                      <----------DOF2                     <----------DOF2                  <xxxxxxxxxxxxxxxxsmallRNA(s)         <---------AHL20(2)            --------->ANAC55(2)               --------->HSFB2a(2)                         --------->AHL20(2)            <---------ANAC58                  <---------HSFB2a(2) <----------DOF2       --------->TOE1(3)            <---------ANAC46                 <-----------------AGL2                     <----------DOF2            <---------ANAC58                 <-----------------AGL1                     --------->TOE2(3)            <---------ANAC55(2)              ----------------->AGL1          <---------AHL20(2)     -   ttttggttcaagtttcgtaatagctttttatttttgtattttgggcttccaaaactgggcttttagctctttaaaacatttttttttaaactttaaattg  30429100                                                                                 --------->AHL20(2)                                                                               ----------->TBP                                                                       ----------->HVH21                                                                       --------->DOF5.7(2)                                                                      <-------MYC3                                                                      <-------MYC2                                                                      ------->MYC3                                                                      ------->MYC2                                                                     --------->ANAC55(2)                                                                     --------->ANAC46                                                                     <---------ANAC55(2)                                                                     ================================                                                                     --------->O2<---------AHL20(2)                                                                     --------->ANAC58                                                                     <---------TGA1a                                                                     --------->TGA1a                                                                     --------->ANAC58                                                                   <---------ALFIN1                    --------->AHL20(2)              <------------CBF <---------O2----------->TBP                 --------->AHL20(2)    <---------WRKY18(1)    <--------------OsCBT                <---------AHL20(2)    --------->WRKY12    <---------ANAC58    ------->TEIL          <  <---------YAB1--------->AHL20(2)    ----------->HVH21 <---------ANAC46 <---------DOF5.7(2)       <- -------->YAB1--------->YAB1          --------->WRKY38(1) <---------ANAC58------->TEIL             <-   aattatcatttaacaaaaataaataaaaacaaattgggccttgacccattctcaaattgggcgtaacacacacgtgaacgtatataaatacagaggcagt  30429200           --------->ARR14(2)           <---------ARR14(2) ==========bZIP_DOF                                                     --------->TOE2(3)         --- ----------DOF2            <---------AHL20(2)             --------->GLK1(2)                       <-- --------ANAC58  <----------DOF2<-----------GT1 <-------TEIL       <---------MYB52(1)<----------DOF2 --------ANAC58<---------At4g35610<---------AtLEC2       <---------GLK1(2)   <---------GLK1(2)<------   ggcttttctggccattccgctttcgccattttttttgcatttctctcaaattcattcaagaatccctctgttaatcttagaatccctcttttaatctcag  30429300                                         ------>NtERF2                                        --------->ANAC46                                        <---------RAP2.6(2)        --------->CCA1(2)               <---------ATERF1(2)     --------->ANAC58                  --------->RAP2.6(3)     --------->ANAC58                 <---------WRKY18(1)                                     <------   <---------AtLEC2        <----------DOF2<------NtERF2                ---------->DOF2     --------->ARR11(3) ------>ARR14(2)      <---------WOX13(1)--------->ATERF1(2)         <----------DOF2     --------->DAG2 -------ARR14(2)     <---------ANAC58--------->WRKY12          <------ZmHOX2a(1)       ---------->DOF2 -----RAV1(2)        <---------ANAC58----------->HVH21    ----------->HVH21 ----------->GT1<---------ARR11(3)   gctctgcaaggtatggatagattgagtgactttgagaggttgacggcagaaattaagtccctgaaggagtctttaaaggagaaaattgataaagttcttt  30429400                                         <----------ID1                             --------->At4g35610                   <---------ZAT6      ------------------------>ANAC81                 ----------->GT1      --------->DAG2                                      <---------AtMYB61        ---------->DOF2      <---------At4g35610                                     --------->ANAC55(2)    <---------ANAC58       <-----------RAV1(2)                                      <---------TOE2(3)    <---------ANAC58     --------->TOE2(3)     ----------->GT1                 <---------YAB1    <---------ANAC46     --------->TOE1(3)   ---------->DOF2                 ----------->GT1 ----DOF2    --------->GLK1(2)       ---------->DOF2  ------------------------>ANAC81<---------ANAC55(2)   caagaagcgtgaaagaagctagtgaaacctcagaagagaaaaaggaacaaagtgaaatcgcagaagagggaaacgaagatggtgataacgtattggtgtc  30429500  Previous    Next  AGI:  At1g80980.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80700.1); similar to unknown [Picea sitchensis] (GB:ABK25947.1) Range:  from: 30426950    to: 30428979    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g80990.1    Description:  XH domain-containing protein. similar to XH domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G80970.1); contains InterPro domain Region of unknown function XH (InterPro:IPR005379) Range:  from: 30429313    to: 30430084    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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