Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        --------->ALFIN1                                           ====                                  ---------->DOF2                                                <---                               --------->CCA1(2)                                                 ----                               <------ZmHOX2a(2)                             <---------ANAC58   -----                              --------->ARR11(3)                       <---------ANAC58  <---------RVE1(1)                    --------->At4g35610                                <---------ANAC58  <---------CCA1(1)             <---------ZAT14  --------->ARR14(2)                      <---------STY1(2) <---------GLK1(2)             --------->ZAT14  <---------ARR14(2)           --------->ALFIN1  <---------ANAC58 <------    <---------------AtSPL8    <---------ARR11(3)           <-----------RAV1(1)          --------->ARR11(3) --->DOF2 --------->ICU4    ----------->ARR10          ---------->DOF2--------->STY1(2) <---------ARR11(3)   gtgaaggaagtactgagtagtgagatggagaagatccaaagtggagagaaaactgatcaaagtgttgctacttgctagtgcttagctagagattttttgc  30362700                                                            --------->YAB1                                                            --------->TOE2(3)                                                          <---------ARR11(3)                                                       <---------AHL20(2)                                                       --------->AHL20(2)   <-----------GT1                                 ----------->GT1 ==========================================================MADS_MADS ------------AGL15                          --------->AHL20(2) ----------->AGL15                         <---------------AGL15 ------------>AGL2                     <---------AHL20(1) --------->ARR11(3) <-------TEIL -----GT1                          <-----------GT1 <------ZmHOX2a(1)  --------->AHL20(2)       ------   ccattttagcattttgacattaatgtctcatttgtttttaatatacttaaataggattaaaatcttaatgcattatatatacatagctatttctctcctc  30362800                            <---------AHL20(2)                          --------->AHL20(2)                        <---------CCA1(2)                    --------->ANAC58                    --------->ANAC58                 <---------SPL7                <------MYB83--------->AHL20(2)                 <------ZmHOX2a(1)                <------MYB46(1)                         ---------->DOF2               <---------------AtSPL3                   --------->YAB1               --------->MYB59     <-------TEIL         <--------ATHB1                       <-------               <---------------AtSPL8                  <---------ATHB51               ----------->GT1            --------->ARR14(2)--------->AHL20(2)       --------->ICU4                 <----------ID1- >ZmHOX2a(1)<---------ARR14(2)<---------AHL20(2)       <---------ATHB12           ---------->DOF2  XX   ccttgttagtagtggatttggtacgcatatatatatatacatatataagttttagcaataatgcaggattagattgtttttaaaaaaagagaaaaatgtt  30362900                                     --------->LBD16                                     ------>ZmHOX2a(1)                                  <------ZmHOX2a(2)                                 <---------ARR14(2)                                 --------->ARR11(3)                                            <-----                                 --------->ARR14(2)                                            ------                          <---------------AtSPL8                                          --------->MYB52(1)               <---------ANAC46<---------HSFC1(2)                                        --------->RVE1(1)               --------->ANAC58--------->HSFC1(2)                                    <---------AHL20(2)   ----------->GT1      ---------->DOF2     <-----------HVH21                        --------->AHL20(1) ----RAV1(1)----------->HVH21  <---------HSFB2a(1)                                   <---------AHL20(1) --------->DOF2--------->ANAC58--------->HSFB2a(1)              --------->ANAC58     --------->AHL20(2) XXXXXXXXXXXXXXXXXX>MIR399B/C <---------KAN4(2)                 --------->ANAC58------------>CBF   gccaaaggaaaattgtgacgcacaaaaaaaggaacgatcctgaaattgtcagaagtagacagaaacaagaaaacttgtggagaacaataaaatatcggat  30363000                                                                                         ----------->GT1                                                                                    <---------ANAC58                                                     --------->AHL20(1)      --------------->AGL15                                                    --------->YAB1           <---------------AGL15                                                    --------->AHL20(2)      <-----------------AG ----                                                 <---------ICU4             ----------------->AGL3                                                 --------->YAB1             <-----------------AGL1                           <---------AHL20(2)   --------->ICU4              ----------------->AGL2                           --------->AHL20(2)   <---------YAB1              ----------------->AGL1                        <---------AHL20(2)    --------->YAB1                *TSS    <---------ANAC58          --------->AHL20(2)               --------->ANAC55(2)              <-----------------AGL2  <  <---------ZAT14       --------->AHL20(2) --------->ANAC58             <---------At4g35610     -----  --------->ZAT14  <---------AHL20(1)      <---------ANAC55(2)          --------->At4g35610XXXXXXXXXX ----ARR14(2)      --------->AHL20(1)      ----------->GT1<-----------GT1   <-----------------AGL3  - --->ARR14(2)   --------->AHL20(2)         --------->ANAC58   <------------------------ANAC81--------   tcagaacagagattaaaaaaaaatattaaaaaaatagaaatcgataagtaataataatattatctcttcttctctgcttccattttgggtatcgataaac  30363100                                             <---------HSFB2a(2)                                             --------->HSFC1(1)                                        ------>NtERF2                                       --------->RAP2.3(3)                                       --------->RAP2.3(2)                                       --------->DEAR3(1)                                      --------->RAP2.3(1)                                      --------->ATERF1(1)                                      --------->DEAR4(2)                                      --------->ORA47(2)                                      <------NtERF2                                     ------>NtERF2                                     --------->ABI4(1)                                    --------->RRTF1(3)                                    --------->ANAC46                                    <---------DEAR3(1)                                    --------->DEAR3(1)                                    --------->RAP2.3(2)                                    --------->RAP2.3(3)                                   --------->ERF1                                   --------->RAP2.3(1)                                   --------->ATERF1(1)            --------->LBD16       <---------ATERF1(1)         <---------MYB46(2)           --------->LBD16       ------->GAMYB                <---------MYB111(1)       ------>ZmHOX2a(1)        --------->MYB46(3)  <-----------GT1 ----->AtMYB61          --------->TOE2(3)    <---------HSFC1(1) ------>MYB46(1) ---------ALFIN1        ------->GAMYB<---------ATERF1(1)      <---------MYB111(2)               ----- ---->MYB46(3)    --------->TOE2(3)--------->DEAR4(2)      <---------ALFIN1                  <------- XXXXXXXXXX>MIR162A/B  --------->MYB46(3)    --------->HSFB2a(2)------>MYB83                 -------- -------->AtMYB61 --------->TOE1(3)--------->ORA47(2)     --------->MYB46(3)          <-------TEIL -- -->DOF2  ----------->RAV1(2)--------->MYB46(3)    --------->CCA1(1)    <----------DOF2     <--------   caccacatccttccctgaaaccctaaccacaacaatcgccgccgtctctagaaatatccatccacctacttcggctttgtttatcaggttcgatatatct  30363200                                                                                                    <                                                                                                    <                                                                                                    -      ------>NtERF2                                                                                 <     --------->DREB2C(2)                                                                            -     <---------ALFIN1                                                                            <---     ------->GAMYB                                                                               ----     --------->DEAR3(1)                                            <---------GLK1(2)           ------    --------->DEAR4(2)                                             <---------ARR11(3)          ======   --------->ABI4(1)                                               <---------ARR14(2)          ======  --------->AtMYB61                                --------------------->WRI1           <---------ARR14(2)  --------->DEAR3(1)                              <---------MYB46(3)   <---------YAB1   --------->ARR14(2)  <---------ALFIN1                             <------MYB83        --------->ARR14(2)------>ZmHOX2a(2) --------->MYB46(3)                            <------MYB46(1)     --------->ARR11(3)================ ---->WOX13(1)                                <---------AtMYB61  ----------->ARR10  <------ZmHOX2a(2) --ARR11(3)                                <-----------RAV1(1) --------->LBD16      ================= ->ARR11(3)                              <----------DOF2       <---------At4g35610 <---------ARR14(2) ------->YAB1   --------->TOE2(3)       <---------ANAC58    <---------At5g28300    --------->ARR14(2) -CCA1(2)    <---------CCA1(2)          <---------ANAC58   <-----------GT1     ----------------->AGL1   atcaccaccgccttcttatctcaatttctgtgtttgatttttgctttgttggtgtttgattttaccgcagattttgatgaaaccagatcgggtcttcctc  30363300         <---------TOE1(2)        >>>>>>>ZML2  <-------TEIL                                --------->YAB1  ------>ZmHOX2a(2)                           <---------ICU4 <------ZmHOX2a(2)                         --------->YAB1 ---------ARR14(2)                         <---------ICU4             --------->YAB1 ---------AGP1                            <---------YAB1         <---------YAB1 -------->AGP1                          --------->YAB1         --------->YAB1 ---------ARR11(3)                     <---------YAB1          <---------ICU4               <-------- -------->ARR14(2)                   <---------ICU4           <---------YAB1              <-------TEIL ------HSFB2a(2)                    <---------YAB1          <---------ICU4              <---------ARR14(2) ----->HSFB2a(2)                    --------->ICU4          --------->YAB1              --------->ARR14(2) >ZmHOX2a(1)                      <--------HAHB4         --------->YAB1      <---------GLK1(2) =======HOX2a_HOX2a               <---------ICU4         <---------ICU4      --------->ARR14(2)   --- ========HOX2a_HOX2a              --------->YAB1      --------->YAB1 <---------ATHB12  ------>MYB46(1) =HOX2a_HOX2a                    <---------YAB1--------->TOE2(3)--------->TOE2(3)      ------>MYB83 =HOX2a_HOX2a             --------->DEAR3(1) <---------YAB1<---------YAB1   <---------At4g35610xxxxxx   tagatccgttctaggttttctatttccaccgtcttatcattatcatcatcatcaattcatcatcatcatcaataatccagatgctcaccaaattcgtcat  30363400                                                                                   <---------ARR14(2)                                                                                   --------->ARR14(2)                                                                              <---------ARR14(2) <---                                          --------->HSFB2a(2)                 <---------AGP1    -----                           <---------ARR14(2)     <---------HSFB2a(2)         --------->ARR14(2)<----                           --------->ARR14(2)     --------->HSFB2a(2)         ------->TEIL    <------                    ---------->DOF2       <---------HSFB2a(2)     <---------HSFB2a(2)  --------->LBD16 ---TGA1          <---------HSFB2a(2) <---------GLK1(2)           --------->HSFB2a(2)------>ZmHOX2a(2) ------>YAB1      --------->HSFB2a(2) <---------ARR14(2)      --------->TOE1(3) ------>ZmHOX2a(2)---- xxxxxxxxxxxxxx>smallRNA(se3)         --------->ARR14(2)      --------->TOE2(3)<---------At4g35610<--   tcatagacatgtctctgtttctgaaagacgattcgattcaaattcgcgaagtctggaacgataaccttcaagaagaaatggatctgatccgagatgtcgt  30363500            <---------ANAC58            <---------bZIP60(1)            <---------O2            --------->ANAC46            --------->TGA1a                   <-----------HVH21            <---------TGA1a                   <---------SPL7            <---------ANAC58             <------NtERF2            --------->O2              <------NtERF2            --------->bZIP60(1)      --------->LBD16 ------>NtERF2                       ------>NtERF2 ------DEAR3(1)                     --------->LBD16                                             ----- ---->ATERF1(1)     --------->AtLEC2--------->ANAC46     --------->ETT(1)                       ----- --NtERF2<---------MYB52(1)        <---------LBD16     <-----------HVH21                  --------->ANAC58 ---ANAC46 --------->SPL7          --------->LBD16     --------->MYB52(1)                 --------->ANAC58 ----->DEAR3(1) ------>NtERF2 <---------GLK1(1)  ----------->HVH21                        --------->ANAC46 -------ATERF1(1)<------NtERF2--------->GLK1(1) --------->SPL7 <----------DOF2       --------->ZAT6--   cgacgacttcccttacgtcgccatggacactgagttccccggcatcgtcgtccgacctgtcggaactttcaaatccaacgctgattaccactacgaaacc  30363600  Previous    Next  AGI:  At1g80770.1    Description:  PDE318 (PIGMENT DEFECTIVE 318); GTP binding. similar to GTP-binding protein-related [Arabidopsis thaliana] (TAIR:AT1G50920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39850.1); contains InterPro domain Nucleolar GTP-binding 1; (InterPro:IPR010674); contains InterPro domain GTP1/OBG; (InterPro:IPR006073) Range:  from: 30360007    to: 30362856    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g80780.1    Description:  CCR4-NOT transcription complex protein, putative. similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT2G32070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45475.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941) Range:  from: 30363076    to: 30364265    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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