Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         --------->ZAT14                                                       <---------ZAT18                                                       --------->ZAT18                     <---------                                                --------------->AtSPL8            --------->ANAC55(1) ->P                                         --------->GLK1(2)                    --------->ANAC58 -MYB59                                  --------->LBD16                          --------->ANAC58 >TOE1(2)         ---------->DOF2       --------->LBD16<---------ZAT14          <---------ALFIN1 -MYB111(1)   <---------TOE2(3)<----------DOF2 --------->YAB1    --------->TOE2(3)--------->ANAC46  <   acctcttgcgaaaattaagaaaaagaagaatgacttttagtcccgagaatcatgtactacactaatacctcatcaacgtcgaacacggcataactttcta  30346900                                                                           ----------->GT1                        <------ZmHOX2a(2)                               ---------->DOF2                       --------->ARR11(3)                               --------->MYB52(1)                       <---------ARR11(3)    ----------->GT1         --------->At4g35610 -DOF2     --------->MYB59          ----------->GT1                <------ZmHOX2a(1)    <-------TEIL ---------PCF2       <---------YAB1<---------TOE2(3)         --------->MYB52(1)      --------->CCA1(2)   tgggcccttatattaggcccattaagatcaatagaatgaggtaaaaatcgaaataacccaaaataacgaggagctaaaggtaattagagatgcgctcgga  30347000                                                             --------->AHL20(2)                                                           <----------DOF2                                                         ------>ZmHOX2a(1)                                                     <-----------GT1                                                 <---------AHL20(2)                                                 <---------AHL20(1)                          <---------GLK1(1)      --------->AHL20(1)                          --------->CCA1(2)      --------->AHL20(2)                          --------->GLK1(1)     --------->AHL20(2)                --------->ANAC58                <---------AHL20(2)                --------->ANAC58             <---------AHL20(2)           <---------At4g35610              --------->AHL20(1)           --------->At4g35610              --------->AHL20(2)                            --------->AHL20(2)    --------->GLK1(2)    <---------ARR11(3) <---------AHL20(1)                            <---------AHL20(2)   <---------GLK1(2)     --------->ARR11(3) <---------AHL20(2)               ----------->GT1      --- ----------->ARR10   ---------->DOF2       --------->AHL20(2)<---------AHL20(2)    <------------CBF--   gttgagattctcccgctcactccaaaagatatccaaaacttggaaattaattttatttcctctttaatttctccataattcgaaaaattgattttatttc  30347100                             --------->ZAT14                                                     <---                           --------->ANAC58                                                     -----                           --------->ANAC46                                                     <----                           --------->ANAC58                                                     -----                         <---------ALFIN1                                                       <----                         --------->ZAT6                                                 <---------TOE2(3)                    --------->MYB52(2)                                                 <-----------GT1            --------->AHL20(2)              <---------AHL20(2)         <---------AHL20(2)    --------            <---------AHL20(2)             <---------AHL20(2)          --------->AHL20(2) --------->TOE2(3)        <---------YAB1 <-----------GT1<---------DAG2    --------->ATHB51       ------>ZmHOX2a(1)----- --->ZmHOX2a(1)     <---------MYB46(3)<----------DOF2--------------->AGL15    --------->TOE2(3) <---- -------->DOF2<------------CBF  --------->ANAC46<-----------GT1 <------------CBF     --------->AHL20(2)   ctaaagttttctcattaattgtttgttacactccacaacgctttttttattttctccataatttggaattgattttatttcctaaaatttaacattaata  30347200 ------AHL20(2) ---->AHL20(1) -----AHL20(1)                                                  <---------ANAC58 ---->AHL20(2)                                                  <---------ANAC58 -----ARR11(3)                                              <---------ANAC58 ->AHL20(2)                                                 <---------ANAC58                    <---- ---->ARR11(3) --------->ANAC58                    --------->REM1(1)                    <------NtERF2 -----AHL20(2) --------->ANAC58      <---------CCA1(2) <----------DOF2                  --------->At4g35610   tatttgctccactagtcacgactagtacatatagacctcgtctctgcaacgcttcatcttttacttgctcgtcttctctgcgaaaatggcagcgagaaac  30347300                                         <---------ATERF1(2)                              ------>ZmHOX2a(2)                             --------->CCA1(2)                             <------ZmHOX2a(2)                            <---------ARR14(2)                            <-----------ARR10                            --------->ARR14(2)                                                      -                            --------->AGP1                              <---------ARR14(2)     ------             <----------CDC5<---------ARR11(3)             <---------ANAC46                    ------          --------->ZAT18   --------->ARR11(3)           <-------GAMYB  --------->ARR14(2)    -------       ---------->DOF2      <---------AGP1------>NtERF2 <---------MYB46(3)                   <-------       --------->CCA1(2)   <---------CCA1(2)    --------->MYB46(3)--------->ATERF1(1)        --------  ---------->DOF2         ----------->ARR10<------NtERF2<-----------RAV1(1)         ---------->CDC5 - -----MYB52(2)         <-----------HVH21 --------->ATERF1(2)    <---------ANAC46   <------NtERF2    -   aaacaaaagaaacgcgctgagccagagtcagatctgtgcttcgctggcaaaccaatgtctgttgtggagtcgacgattcgatggcctcatcgctaccaat  30347400                                                          --------->LBD16 -------->ANAC46         --------->AtMYB61               <---------ANAC46             <---------ANAC58 >MYB46(1)           --------->DEAR3(1)                 <---------LBD16               <---------ANAC58 >MYB83---------->DOF2------>NtERF2                    --------->MYB52(1)          ---------->ID1 -->WOX13(1)         <---------ETT(1)                <---------DAG2          --------->ARR11(3) --------AGL15   <---------ZAT2                      <----------DOF2       <---------YAB1           - ->AtMYB61       --------->ZAT2              ----------->GT1             --------->YAB1          <--- -------->ANAC58--------->ANAC58         --------->MYB52(1)           <----------DOF2 <---------ANAC46 -------->ANAC58--------->ANAC58 --------->TOE1(2)<-----------GT1 ---------->ID1 <-----------RAV1(1)<   ccaagaaaacaaagctccaagctccgaccaaaaaacctgcaaataaggggtataactttacggggtttgtctcttttatgattttgttgcttagcttctg  30347500                                                                                 <---------MYB46(3)                                                   --------->ANAC58             <---------WOX13(1)                                                   --------->ANAC58             <--------P          -              <---------At5g28300              --------->ANAC58               <---------MYB46(3)    <             <-----------GT1                   --------->ANAC58              <---------AtMYB61      - -------->At4g35610                           --------->DAG2               <----------DOF2          - ------MYB52(1)          ---------->DOF2     ---------->DOF2          ---------->DOF2   <---------GLK1(1) ---------At4g35610----------->GT1    ----------->GT1           <----------DOF2<-------GAMYB      ---   tttgctgattttgttttacagtggcaaaaaagaagatgaagagataataaagcaagctaaatgccactttgacaaagctttggttgatggagttctcatc  30347600                                                                                                    <                                                                                                <----                                                                                                <----                                                                                                -----                                                                                          <---------ANAC55(1)                                                                                          <---------O2                                                                                          <---------bZIP60(2)                                                                                          <---------ANAC46 -------->TOE2(3)     --------->ANAC58                                                    <---------ANAC58 ---------MYB59       --------->ANAC58                   <-----------RAV1(1)              <---------ANAC58 -------->TOE1(3)   <-----------GT1                   <---------AHL20(2)                  <---------ANAC55(2) -------->AtMYB61  ----------->HVH21            <-----------GT1     <----------DOF2       --------->ANAC55(2) ---->TEIL        <-----------HVH21   --------->WOX13(1)<---------TOE2(3) <---------MYB52(1)---------   aacctaaacgacgatgtctatgtcacggtatcgtttttgtcaatctgtgtttacattttatgttgctacgctttctgttttgttgagatgttacgtggta  30347700                                                                                         --------->bZIP60(1)                                                                                         --------->ANAC58                                                                        <---------ZAT18  <---------bZIP60(1)                                                                    <---------------AtSPL8 --------->TGA2(2)                                                                    --------------->AtSPL8<----------                                                                    <---------TOE2(3)    --------->ANAC46                                                                    <---------YAB1       --------->TGA2(1)                                                                 <---------YAB1          <---------TGA2(1)                                                            -------->ATHB1               <---------ANAC55(2)                      <---------YAB1                        --------->YAB1               --------->ANAC58    <---------AtLEC2--------->YAB1                          <--------ATHB1               --------->ANAC55(2) ----------DOF2     <---------ICU4                          <---------ICU4              <-----------STF1 -----ZAT18        <---------ATHB12         <---------AtLEC2--------->ATHB12            --------->SPL7 -----ZAT14      --------->WOX13(1) <---------ANAC58       <---------ATHB12           ------>ZmHOX2a(1) ---->ZAT18  <---------ZAT6         <---------ANAC58       --------->ICU4           <---------ICU4 ------>AtSPL8<-----------HVH21 <----------DOF2          --------->WOX13(1)         ------>ZmHOX2a(2)   cactttccatggttactgtcaatcatcgttgaaacttttcttgtttccatggttaatgtcaatcattgttatggtacacatattgatccttacgtcatta  30347800  Previous    Next  AGI:  At1g80740.1    Description:  CMT1 (CHROMOMETHYLASE 1); DNA binding. Identical to DNA (CMT1) [Arabidopsis Thaliana] (GB:O49139;GB:O49137;GB:O49138;GB:O49141;GB:O50057;GB:O50073;GB:Q38940;GB:Q7G196); similar to CMT3 (CHROMOMETHYLASE 3) [Arabidopsis thaliana] (TAIR:AT1G69770.1); similar to chromomethylase [Arabidopsis arenosa] (GB:AAB95486.1); similar to chromomethylase [Arabidopsis suecica] (GB:AAC02670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23425.1); contains InterPro domain C-5 cytosine-specific DNA methylase; (InterPro:IPR001525); contains InterPro domain Chromo domain-like; (InterPro:IPR016197); contains InterPro domain Chromo domain; (InterPro Range:  from: 30347286    to: 30351940    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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