Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <------NtERF2                                                                                  <---------DEAR3(1)                                                                                  <---------ANAC46                                                                                 <------NtERF2                                                                                 --------->ATERF1(1)                                                                                 --------->At4g35610                                                                                 <---------ABI4(1)                                                                                 <---------At4g35610                                                                                 <---------LBD16                                                                                ------>NtERF2                                                                                <---------ORA47(2)                                                                                <---------ERF1                                                                                <---------RAP2.6(1)                                                                                <---------RAP2.3(1)                                                                                <---------RRTF1(1)                                                                                <---------ATERF1(1)                                                                               <---------RAP2.3(3)                                                                               --------->ATERF1(2)                                                                               <---------RAP2.3(2)                                                                               <---------RRTF1(2)                                                                               <---------DREB2C(2)                     ---------->DOF2                                           <---------RAP2.6(2)                  <-------GAMYB                              --------->YAB1    <---------DEAR3(1)                 <---------DEAR3(1)                 --------->ARR11(3)         <---------ATERF1(2)              <---------ZAT18                       <---------ARR11(3)         <---------ANAC46             --------->ALFIN1           <<<<<<<<<TBF1--------->CCA1(2)         <---------RRTF1(3)  --        --------->MYB52(1)   --------->ALFIN1   ---------->DOF2               <---------LBD16      <-   gacattcggataacagtgggcgttgaagcaggtttgggcttcttcttcttaaaagatttagaatcatctcgagagcgtttggcggcggagagaagagaag  30340600          ------>NtERF2         ----------->HVH21        --------->ATERF1(1)        <------NtERF2       <---------LBD16       <---------At4g35610               <---------ANAC58       ------>NtERF2                     <---------ANAC58                                   <--------      <---------ANAC58                   <---------ANAC46                                 --------->ATHB12      <---------ANAC58       <---------ARR11(3)                                  <------NtERF2      <---------ANAC46   XXXXXXXXXXXXXXXXXXXX>MIR839                            ------>NtERF2     <<<<<<<<<E2Fd      --------->MYB46(3)                                     --------->DEAR3(1) <--     <<<<<<<<<E2Fc     --------->At4g35610     <---------TOE1(2)               <---------ETT(2)   <-- <----------DOF2      --------->RAP2.3(3)--------->ANAC55(2)                 <---------ATERF1(1)<---- ------->HSFC1(2)   --------->At4g35610  <---------ANAC55(1)            --------->SPL7  <---------WOX13(1) --------HSFC1(2)   <---------At4g35610  <---------ANAC55(2)      <---------At4g35610 --------->ATHB12   aagctttggcgcggacattgagagcagccaacatctcatcgttccgtcttatgttctccaatctcttccgctcgtactccgtcgccattgattgattgat  30340700                             --------->ANAC58                             --------->ANAC58                       <----------DOF2                         *TSS                    <-----------GT1              <---------RVE1(1)                   ---------->ID1                <---------CCA1(1)                          ---------                  <-----------GT1               --------->ARR11(3)                          <--------             --------->ARR11(3)                 <---------ARR11(3)                <---------HSFB2a(2) -WOX13(1)   <---------ARR11(3)                 <---------GLK1(2)              <---------ARR11(3) --- -------ANAC58<---------CCA1(1)         --------->DAG2       --------->ANAC46  --------->ARR11(3)---- -------ANAC58<---------RVE1(1)        ---------->DOF2<-----------GT1   ---------->DOF2   ---------->DOF2 -----YAB1 <---------TOE2(3) --------->ANAC46  <---------RVE1(1)--------->AtMYB61 --------->HSFB2a(2)   gcttgagaaaattgagattttttctctttacacacaaacaaaaaaggagagatttttttcttcacaccaaaactgaaagaagacctagaagaaaaagaaa  30340800                                                --------->ATERF1(2)                                                --------->RAP2.6(2)                                                <---------ATERF1(2)                                                --------->RAP2.3(2)                                                --------->DEAR3(1)                                               --------->ERF1                                               --------->RAP2.3(1)                                            <------------AtMYB77                                <------NtERF2------->GAMYB                                <---------At4g35610                                --------->At4g35610                               ------>NtERF2--------->MYB46(3)                               <---------RAP2.3(1)                               <-----------GT1                               ----------->RAV1(1)          --------->AHL20(2)<---------ICU4                              <---------RAP2.3(2) <------NtERF2              --------->AHL20(2)                              --------->ATERF1(2)--------->LBD16             <---------AHL20(2)                              <---------ATERF1(2)<---------RAP2.6(3)      <---------AHL20(1)   --------->MYB52(1)         <---------RAP2.6(2)------>NtERF2            --------->AHL20(1) -->GT1                       <---------DEAR3(1)--------->RAP2.3(3)----------->GT1 --ID1              --------->ETT(1)       --------->At4g35610   --------->MYB52(1)            ------ ------>DAG2        ----------->GT1      --------->MYB46(3)--------->AHL20(2)<---------YAB1  -------- ------>DOF2    <---------MYB46(3)     --------->YAB1  --------->AHL20(2)--------->AHL20(2)--------->ANAC46   aaagctaacaacatttgatgggtcggaaataggcggcagaataacaactgccgccaaaaaaataaaaaaacgaaaatatataattacacatttacaccaa  30340900                                <---------TOE2(3)                   <---------ZAT14                                   --------->GLK1(2)         ------     ------>ZmHOX2a(2)         <-----------GT1             --------->SPL7             --------->TOE2(3) ---->DOF2         --------->ZAT14                       <---------SPL7               --------->TOE1(3) ->ANAC46         --------->ALFIN1--------->TOE2(3)      --------->TOE1(2)<---------ICU4  ---------->DOF2   agtgtgatctaaattgaacggtgcagattagtttaacatttatcccaaattttaagaaccgtacgatggagcatcttaatgacttaaaccctaaaagaag  30341000                  ------------>CBF   --------->At4g35610                                --------->LBD16                 <-----------HVH21   <---------At4g35610                              <---------LBD16            --------->ZAT2       <-----------HVH21                                    ----------->RAV1(2)        <---------ATHB12 <---------ANAC58                 <------------------------ANAC81         <--    ------------>CBF     <---------ANAC58          --------->ZAT14   ---------->ID1  --------->MYB52(1) ----->GT1  <---------ZAT2    *TSS <-----------RAV1(2)   <----------DOF2  ------>ZmHOX2a(1)------>NtERF2   aaaaaccccaatcgagctctgtcaatggctcgcttcgtcagatgtctgagaagaacactcttttctaattcgtctccttctattgctcaccggagcccta  30341100                                                                   <---------ANAC46                                                                   <---------ANAC55(2)                                                                   <---------ANAC55(1)                                                                   <---------ANAC58                                                          <---------LBD16                                                      <---------ZAT2                                                      --------->At4g35610                                             --------->At4g35610   --------->O2                                             <---------At4g35610   <---------O2                                           <------NtERF2  <---------ANAC46                                           <-----------RAV1(2)     <---------ANAC58                                         --------->DEAR3(1)--------->LBD16                                         ----------->RAV1(1)       --------->ANAC55(2)                                         --------->RAP2.3(2)     <-----------GT1                XXXXXXXXXXXXXXXXXXXX>MIR2111A/B       <---------At4g35610            --------->ANAC58           <---------At4g35610--------->HSFB2a(2)            <---------At4g35610            --------->ANAC46           --------->At4g35610<---------HSFB2a(2)            --------->At4g35610            --------->ANAC58      <-----------GT1     --------->GLK1(1)             <---------GLK1(1)  <------MYB83 ------->TEIL     --------->AHL20(2)    --------->ZAT2        --------->GLK1(1)   -----  <------MYB46(1)        ------>ZmHOX2a(1)--------->LBD16<---------LBD16    ---------->DOF2<--------- <---------AtMYB61      --------->TOE2(3)--------->RAP2.6(2)<---------MYB52(1)      --------->GLK1(1) ----ZmHOX2a(1)--------->GLK1(2)<---------AHL20(2)    <---------GLK1(1)    --------->ARR14(2)  ------   ggattggtttgcccacgaatctaaatcctaaaattttaatcagccgcagatgtctgagctccgggagttacgtctcagaaatgcagaaatcagctttcca  30341200                                                   <---------ATERF1(1)                                <---------ANAC58  --------->ANAC46                                <---------ANAC58  --------->ANAC58                               <---------------AtSPL3                   <---------ANAC55(2)            --------->ANAC58                   --------->ANAC55(2)       <------ZmHOX2a(2)  <---------GLK1(2)                  ------>ZmHOX2a(2)          ===================HOX2a_HOX2a ----------->RAV1(1)--------->LBD16         <-----------HVH21<-----------RAV1(2) ---->LBD16     <---------ARR14(2)  --------->ANAC58     ------>ZmHOX2a(1) -DOF2    <---------RAP2.6(2)  <---------------AtSPL8 ------>NtERF2             <----------DOF2 --->HSFB2a(2)  --------->ARR14(2)  --------->ANAC58 --------->DEAR3(1)    ------->TEIL   gggcaacattttgcgactgatccgtaatgagattgagtacgaactcgatcactcgcctcctcttcaggttctctatgaatctctttttttttggttctat  30341300                 <---------ARR14(2)                 --------->GLK1(2)                 --------->ARR14(2)                                                     <---------ZAT14               <------ZmHOX2a(1)                                         <---------AHL20(2) ---------            <---------HSFC1(1)                                           --------->AHL20(2) <--------            --------->HSFC1(1)                              <---------ANAC58      <---------AGP1    <            <---------HSFB2a(2)                             <---------ANAC58<---------TOE2(3)       <            --------->HSFB2a(2)     <---------YAB1 <---------WOX13(1)--------->YAB1     --------->ZAT14 <----------DOF2<---------GLK1(2) <---------ZAT6 --------->ATHB12  --------->GLK1(2)------>ZmHOX2a(2)   attctttaagccttctaggaatctggttttggaatagtgttattgatcaattgattgttttggcatgagaatcatataaatgttgatctgtatagtgtaa  30341400    <-------TEIL -->GT1 -ZAT6                                                                   --------->GLK1(1) ---------TOE2(3)                                 <---------ZAT14       --------->ARR14(2) ---------TOE2(2)    --------->ATHB12             --------->ZAT14       <---------ARR14(2)   cttaggttgatacaatttgtaaactattggatgaagaaaatgttcacatctctgcaatggcctctctgttttgggatttgcaagttttttttttttttgg  30341500  Previous    Next  AGI:  At1g80710.1    Description:  transducin family protein / WD-40 repeat family protein. similar to DDB2 (DAMAGED DNA-BINDING 2), nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G58760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67712.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 30338315    to: 30340763    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g80720.1    Description:  mitochondrial glycoprotein family protein / MAM33 family protein. similar to mitochondrial glycoprotein family protein / MAM33 family protein [Arabidopsis thaliana] (TAIR:AT1G15870.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45048.1); contains InterPro domain Mitochondrial glycoprotein; (InterPro:IPR003428) Range:  from: 30341030    to: 30342457    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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