Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  --------->At5g28300                                                               ----------->GT1                                                              --------->ANAC58                                                              --------->ANAC58                        ---------->DOF2                       --------->ANAC46                      --------->ANAC58                      <---------ALFIN1           <---------ARR14(2)                    <---------ANAC58           --------->ARR14(2)                    <---------ANAC58 ------>DAG2          --------->ANAC58     --------------------->WRI1            --------->AHL20(2) ------>DOF2          --------->ANAC46   -------->P<---------MYB52(1)   <---------AHL20(2) ->HSFB2a(2)       <---------SPL7 --------->At4g35610      <---------REM1(2)  --------->TOE2(3) --HSFB2a(2)  <---------YAB1      <---------At4g35610 <---------ANAC46  <---------YAB1             <-   aaagtagttatcggttccgattgtacgaaagcagtcagcaaactaccattttcgtttcgtcaacacggtaacatattattcattaatatgaaggcgatgt  30309900                                                            <---------TOE2(2)                                                            <---------TOE1(2)                                               --------->TOE2(3)            --------->AHL20(2)                 --------->YAB1            <---------AHL20(2)               --------->ARR11(3)                           --------->At4g35610            --------->AHL20(1)               --------->GLK1(2) <---------ARR11(3)        <---------TOE1(2)       --------->AHL20(2)        --------->TOE2(3)  <---------ATHB12                  --------->YAB1    --------->YAB1         ------>ZmHOX2a(1) <---------ARR11(3)--------->ARR11(3) <---------AHL20(2) --------->TOE2(3)        --------->TOE2(3) --------->CCA1(1) --------->YAB1     --------->AHL20(2)-- --------TOE2(3)      <----------DOF2       --------->RVE1(1)<---------YAB1      <---------AHL20(2)<-   taacatttataaaataaaatgctactttccttatttcttaaccaaaaaatcttaatcagtcgtatgatattgttgttatctaatttaatcgtagctacaa  30310000                                                    --------->ANAC46                                                    --------->ANAC58                                                    --------->ANAC58                        ---------                                                    <---------ANAC55(2)                     <--------                                                    ----------->GT1                       --------->YAB1                                                    --------->ANAC55(2)                  --------->ICU4                                                   <---------TOE2(3)                     <---------YAB1                                                  --------->MYB52(1)                   --------->YAB1                             <-----------ARR10  <---------MYB52(2)                  --------->YAB1                        --------->MYB52(1)   --------->ZAT18                       --------->ICU4  <-    ---------->DOF2     ------>MYB46(1)      <---------ZAT18                       <---------ZAT6<--- ------->ARR11(3)       ------>MYB83       <---------At4g35610     --------->At4g35610--------->ICU4 --------ARR11(3)   ------->TEIL           --------->At4g35610     <---------At4g35610<---------YAB1   agattttaaagtgcctcataagaacctagcgaatcaaacctcatgagctcactaacgtaacatttactcatctcaagtctcagtagtgatgatgatgatg  30310100                                                                            ------------>CBF    ----------->GT1                                                    <---------ANAC58 --------->At4g35610               --------->ANAC58                    <---------ANAC55(2) <---------At4g35610             ---------->DOF2                       <---------ANAC58 >ICU4                   <---------DAG2        --------->DEAR3(1)      --------->ANAC55(2) -YAB1    <---------AHL20(2) <---------At5g28300<-----------HVH21      <---------ANAC46         <---- ----------RAV1(2)       <----------DOF2    <-----------GT1     <----------DOF2     --------->LBD16 --------HVH21     <----------DOF2 --------->ANAC58             <---------DAG2    <---------LBD16----   gtcagatggttttaaatttgactttcacttttaccgaaagcacataaaaccgtcccttctggtttactttatcgcgtgatcaattccggtttactagaga  30310200                                                                                  --------->ARR11(3)                                                                                  <---------ARR11(3)                                                                             <------NtERF2                                                                            <---------RAP2.6(3)                                                                           >>>>>>>>>AtERF-1                                                                           --------->RAP2.3(3)                                                                           >>>>>>>>>AtERF-7                                                                           >>>>>>>>>AtERF-2                                                                           --------->DEAR3(1)                                                                           --------->RRTF1(2)                                                                           >>>>>>>>>AtERF-4                                                                           >>>>>>>>>AtERF-5                                                                           <---------ATERF1(2)                                                                           --------->RAP2.3(2)                                                                           --------->RAP2.6(2)                                                                           --------->RRTF1(3)                                                                           --------->ATERF1(2)                                                                           >>>>>>>>>AtERF-3                                                                          --------->ERF1                                                                          --------->RRTF1(1)                                                                          --------->DEAR3(2)                                                                          --------->ORA47(2)                                                                          <------NtERF2                                                                         <---------ATERF1(1)                                                                         <---------At4g35610                                                                         ------>NtERF2                                                                         --------->At4g35610                                                                         <---------RAP2.3(1)                                                                         --------->ZAT2                                                                         --------->ABI4(2)                                                                        --------->ARR14(2)                                                                        <---------ARR14(2)                                                                      --------->LBD16                                                         --------->TOE2(3)--------->RAP2.3(1)                                                      *TSS           --------->ANAC46                                                  --------->AtMYB61  --------->HSFB2a(2)                                                ------>MYB46(1)      <---------HSFB2a(2)                                                ------>MYB83 ---------->DOF2------>NtERF2                                              <---------MYB111(1)    --------->LBD16                                              --------->MYB46(3)    <---------LBD16                     <------MYB83--------->YAB1--------->ANAC46    --------->MYB52(1)      <---------AtLEC2 -----ARR14(2)       <------MYB46(1)        ------->TEIL --------->TOE1(3)--------->ATERF1(1)      <- ----->MYB52(1)<---------YAB1   <---------YAB1<---------MYB55(2)--------->At4g35610<------ZmHOX2a(2)   accggactgagaccattttcatttggttccatctatgatcaacatgtacccaccaaaaaccctaaaagctcccggagccgccaagatcagtttccatggc  30310300                                                                               ------>ZmHOX2a(1)                                                                           <---------ALFIN1                                                                         ------>ZmHOX2a(1)                                                                        <---------ALFIN1                                                                      ------>ZmHOX2a(1)                                                                   ------>ZmHOX2a(1)                                                                   <XXXXXXXXXXXXXXXXXXXXMIR854A-E      --------->ANAC46                                         ------->GAMYB------>ZmHOX2a(1)      --------->ANAC58                              <---------DAG2<---------ALFIN1      --------->At4g35610      --------->ANAC58             <---------ARR14(2)          --------->AtMYB61   <---------ICU4   <---------At4g35610 ----------->GT1           <-----------GT1  <xxxxxxxxxxxxxxxxsmallRNA(se3) --------->REM1(1)    <---------TOE2(3) <---------CCA1(2)     --------->MYB46(3)   --------->YAB1 ---------DOF2--------->AtMYB61    --------->ARR14(2)<----------DOF2 <---------ALFIN1 <---------ALFIN1   gcttcatctcgccagaccaaaacaaaggttacattcgaatccatctctcattcaccttttctcaacctcctcctcctcctcctcatcatcacctcaagac  30310400               --------->MYB46(3)                         <---------ZAT14           <---------ATHB12                               --------->ZAT14     --------->GLK1(2)                        --------->RVE1(1)     <-----------ARR10            <---------TOE1(2)   ------>ZmHOX2a(1)     ------->TEIL           <---------ICU4   <---------ARR11(3)    <---------ARR14(1)      --------->YAB1--------->AHL20(2)  --------->ANAC58         <---------ATHB12  --------->ARR11(3)       --------->At4g35610  --------->ANAC58       --------->WOX13(1)<---------AHL20(2)       --------->YAB1                 <-   gggaacgaatctaatgaacagccctctcaatcatcgtcggattataaaatctcttcctacttcagtggtatcagaagcagtctcaaacagactcagtctc  30310500                                 <---------ALFIN1                  <-----------RAV1(2)                             ------>NtERF2                      <---------GLK1(1)                        <-------TEIL--------->TOE1(3)      <---------LBD16                       --------->ARR14(1)             <---------MYB52(1)    --------->At4g35610                      <---------GLK1(2)             <---------HSFB2a(2)    --------->GLK1(2)                      <---------ARR14(2)            --------->HSFB2a(2)  <------ZmHOX2a(1)                      --------->ARR14(2)           <---------LBD16 <---------LBD16                     --------->At4g35610        <----------DOF2 --------->GLK1(1)                     <---------At4g35610  --------->ARR14(2)   <---------ARR11(3)                   -                    ----------->ARR10     <---------ARR14(2)  <------ZmHOX2a(1)      <---------GLK1(1) -----ZmHOX2a(1) <-----------HVH21  --------->TOE2(3)--------->LBD16  <------ZmHOX2a(1)   --------->LBD16   aggacgggaagagacagttcgtcagattcgatgccaaacctcagaattcgctttccggtaaccaggatatcaggaggaatctgaacgagttccgaagtag  30310600                     --------->GLK1(1)               ------>NtERF2              --------->DEAR3(1)             <------NtERF2             --------->ATERF1(1)             <----------CDC5            <---------ATERF1(1)            ------>NtERF2            --------->ABI4(1)           --------->RAP2.3(2)           --------->ATERF1(2)           --------->RRTF1(3)           --------->RAP2.6(2)           <---------ATERF1(2)           --------->RRTF1(2)           <---------DEAR3(1)           --------->DEAR3(1)           --------->RAP2.3(3)          --------->ATERF1(1)          --------->RAP2.6(1)          --------->DEAR4(2)          --------->RAP2.3(1)          --------->ORA47(2)          --------->RRTF1(1)          --------->ERF1         <---------At4g35610         --------->LBD16         ------>NtERF2          <----------DOF2         --------->ABI4(1)     ------>ZmHOX2a(2)         --------->At4g35610  <------ZmHOX2a(2)         <---------ATERF1(1)  <---------RVE1(1)        <---------ALFIN1     --------->ARR11(3)        --------->DEAR3(1)   <---------ARR11(3)        --------->ANAC46     --------->GLK1(2)       <---------LBD16       --------->ARR14(3)      <---------ATERF1(1)    <-----------ARR10     --------->ARR14(2)      <---------ARR14(2)          --------->ARR11(3)     <---------ARR14(2)      --------->ARR14(2)          <---------ARR11(3)    <---------ZAT2   --------->CCA1(2)                   --------->GLK1(2)    --------->ZAT2   <---------GLK1(1)                   --------->ARR14(2)         <---------ANAC58    --------->At4g35610      <---------ARR14(3)      --------->YAB1                 <---------ANAC58    <---------At4g35610     <------ZmHOX2a(1)       <---------YAB1                  --------->ALFIN1  --------->MYB46(3)--------->ARR14(2)      --------->GLK1(2)            <---------TOE1(2)     ------ ---------->RAV1(1) <---------ARR14(2)  --------->YAB1   <---------ARR14(2)      <---------TOE1(2) --   agcaacagctccgccgccgagggatatgcaggatcttttcaagcagaatgtgttatcaaaatctggagggactcgtagaatcgaaggtgtgccattaaca  30310700                                   --------->ANAC46   ---------->DOF2          --------->AtMYB61   --------->DAG2   <---------At4g35610 <---------MYB55(2)  --------->MYB52(1)--------->At4g35610 --------->MYB46(3)  ---------->DOF2 <-----------RAV1(2)  -------->P                                             ------- --->MYB46(3)  <---------TOE2(3)   --------->ANAC58                <---------LBD16   <---------YAB1 ------->YAB1 ---------->DOF2      --------->ANAC58            <---------AHL20(2) --------->ICU4-----   aacataaaggcgaacttaaggcagatgagaccacaacaagcaaccactgagagcaaatgggccaatttatctgggattcagaacattatgaagacgaaca  30310800  Previous    Next  AGI:  At1g80620.1    Description:  ribosomal protein S15 family protein. similar to ribosomal protein S15 family protein [Arabidopsis thaliana] (TAIR:AT1G15810.1); similar to Os02g0803200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048424.1); similar to hypothetical protein OsJ_019499 [Oryza sativa (japonica cultivar-group)] (GB:EAZ36016.1); similar to hypothetical protein OsI_021122 [Oryza sativa (indica cultivar-group)] (GB:EAY99889.1); contains InterPro domain Ribosomal protein S15; (InterPro:IPR000589); contains InterPro domain S15/NS1, RNA-binding (InterPro:IPR009068); contains InterPro domain Ribosomal protein S15, bacterial-type; (InterPro:IPR005290) Range:  from: 30310254    to: 30312309    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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