Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             ------>ZmHOX2a(2)                          ================================HOX2a_HOX2a                          <------ZmHOX2a(2)                         <---------ARR14(2)                         --------->ARR14(2)                         <---------ARR11(3)                         --------->ARR11(3)                         <---------AGP1          <------ZmHOX2a(1)===============================HOX2a_HOX2a          =======================HOX2a_HOX2a          ========================HOX2a_HOX2a                                                     <--   <---------ANAC58      --------->AGP1                                                           <--   <---------ANAC58     <---------CCA1(2)                                                       -----   <---------ANAC46 <----------DOF2      <---------At4g35610                --------->YAB1      ----- ------->At4g35610 <---------ANAC58     <---------ALFIN1                   <---------ATHB12     <---- ------>ALFIN1     <---------ANAC58 <---------GLK1(1)                 --------->ANAC58          <---- ---ZmHOX2a(1)<-----------RAV1(1)   --------->GLK1(1)      --------->YAB1--------->WOX13(1)--------->HSFB2a(2) ---HSFB2a(2) <---------REM1(1)   <------NtERF2    <------ZmHOX2a(1)  --------->ANAC58     <---------LBD16 -->HSFB2a(2) --------->ALFIN1  --------->ETT(1) <---------TOE2(3)  ---------->DOF2        <---------HSFB2a(2)   gagttgcctataggaggtgttgctttagatcttgtcggagttccactgcctaaggaaacattgatcagggcaaagcaatcagacgctcttcttctcggag  30292300                      --------->TOE1(3)      <------MYB83    --------->YAB1      <------MYB46(1) --------->TOE2(3)  <---------MYB46(3) <---------YAB1 ---------RAV1(1)  <-----------GT1 -------MYB46(3)<---------ICU4       <---------At4g35610 ---->ZAT2      <--------HAHB4       --------->At4g35610                            <------NtERF2 ---->At4g35610--------->ICU4  <---------ANAC58                                     <---------RAP2.6(3) -----At4g35610<---------YAB1  <---------ANAC58          ---------->DOF2           --------->RAP2.6(2) -----ZAT2 ----------->GT1  <----------DOF2        <-------TEIL                   ----------------->AGL1   ctgttggatggtatggtattattaccataactttcgttcatctcaagtttggattcatctaaagtttggatttttgaattgaaggccgaaatgggataac  30292400                                              <---------ARR14(2)                                              --------->ARR14(2)                                            <---------RAP2.3(1)                                           <---------RAP2.3(2)                                 <-----                                           <---------DEAR3(1)                                 -------                                   --------->At4g35610                                --------->At4g35610                                   <---------At4g35610                                <---------At4g35610                                   <---------ZAT2                                    --------->ALFIN1                                   --------->ZAT2                                  <---------ANAC58                            <-----------RAV1(1)                                    <---------At4g35610                       ------->GAMYB   <---------ANAC58                            <---------ANAC58                  --------->DOF5.7(2)  <---------ANAC58                            <---------ANAC46     <---------ATHB12--------->RAP2.6(3)  --------->SPL7                        <---------MYB52(1)    --------->ANAC58<---------DOF5.7(2)<---------ANAC46                        <-----------HVH21   --    --------->ANAC58--------->MYB52(1)<-------TEIL                      ------>ZmHOX2a(1)<---------At4g35610   aatcccaagcatttgaagccgataacggccttgttgcagcttcgtgcggctcttcaagtatttgatgagccctccttcttctgtgaggtgctgctaataa  30292500                      <---------AHL20(2)                      --------->AHL20(2)                    --------->AHL20(2)                    <---------AHL20(2)                  --------->AHL20(2)                  <---------AHL20(2)                <---------AHL20(2)                --------->AHL20(2)            --------->AHL20(2)          --------->AHL20(2)<---------AHL20(2)          <---------AHL20(2)--------->AHL20(2)        --------->AHL20(2)--------->AHL20(2)        <---------AHL20(2)<---------AHL20(2)      <---------AHL20(2)--------->AHL20(2)                                             <---------WRKY38(1)      --------->AHL20(2)<---------AHL20(2)                                            ------------>CBF ----AHL20(2) --------->AHL20(2)            ----------->GT1                    <----------DOF2 -->AHL20(2)<---------AHL20(2)<---------AHL20(2)                        --------->AHL20(2) --------->GT1<---------AHL20(2)  <-----------RAV1(1)                   <---------AHL20(2)          -   atggatatatatatatatatatatatatatatatatatgttgtatgtggtaatgtaaggtgtccatttacaaaattaaaaactttggggtcaattctgaa  30292600                                                                                      --------->GLK1(2)                                                   <---------ZAT14                    --------->ARR14(2)                                                   <---------ZAT18          <---------ANAC46                                                   --------->ZAT18         <---------LBD16          -               ---------->DOF2  ---------->DOF2    --------->ZAT14      <---------ANAC58     --------   ------------>CBF --------->PCF2      ---------->DOF2                 <---------ANAC58  --------->LBD16 -------->AHL20(2) <------ZmHOX2a(1) ----------->GT1   *TSS   <-----------GT1         <---------ARR14(2)   aataaaacaatgtgcaaaaaaggacccataaatgcaaagaagtaaagtctgagtgtactagtagtatccatttgacttgcggtttcaaaatccgaaaaag  30292700                                   --------->ZAT14                                   --------->At4g35610                               <---------ARR14(2)                              <------NtERF2                              --------->ATERF1(1)                             <---------ATERF1(1)                             <---------RAP2.3(1)                             <---------DEAR3(2)                             <---------ERF1                             ------>NtERF2                             <---------RRTF1(1)                            --------->DEAR3(1)                            <---------RAP2.3(3)                            <---------RAP2.3(2)                            <---------DEAR3(1)                            <---------RAP2.6(2)                           <---------DREB2C(1)                           <---------At4g35610                           --------->DREB2C(1)                           --------->RAP2.3(1)                           --------->ATERF1(1)                           <------NtERF2                           --------->DEAR4(2)             <---------TOE2(3)                          <---------RRTF1(1)              <---------TOE1(3)                          <---------ORA47(2)            <---------WRKY38(1)                          <---------ERF1                <---------WRKY12                          <---------ATERF1(1)          --------->WRKY18(1)                          ------>NtERF2          <---------SPL7                          <---------RAP2.6(1)  <---------LBD16                          <---------DEAR4(2) --------->ARR11(3)                         <---------DEAR3(1)  <---------ARR14(2)                         <---------RAP2.3(3)<---------GLK1(1)                         <---------RAP2.6(2)--------->KAN4(1)                         <---------RRTF1(2) <---------KAN4(1)                         <---------DREB2C(2)<---------HSFB2a(1)                         <---------RRTF1(3)---------->TaMYB80                         <---------RAP2.3(2)--------->HSFB2a(1)  --------->LBD16                 ----------->HVH21 <---------ZAT14 --------->SPL7------>NtERF2<---------At4g35610    --------->WOX13(1)   <---------ANAC46  <---------KAN4(2) --------->ARR14(2)  <---------ATHB12       <---------ATERF1(2)--------->GLK1(1)<---------ARR14(2) ------>MYB46(1) --------->LBD16   <---------At4g35610<-----------HVH21  <-------TEIL ------>MYB83   --------->LBD16--------->ARR14(2)--------->LBD16<---------RAP2.6(2)           ------- -------->WOX13(1)       --------->ATERF1(2)<----------TaMYB80  <---------ANAC46<----------DOF2 -->DOF2 ------>ZmHOX2a(1)<---------RAP2.3(1)--------->ARR14(2)<---------LBD16--------->At4g35610   accaatcaatcctttctccctgaaatggcggcggctctgcagacgaatatccggacggtcaaggttccggctacgttcagagctgtaagtaaacagtcat  30292800                                                                                    <---------HSFB2a(2)                                                                                    --------->HSFB2a(2)                                                                              --------->At4g35610                                                                              <------NtERF2                                                                              <---------At4g35610                                                                           <------NtERF2                                                                         --------->ANAC58                                                                         --------->ANAC58                                                                        --------->ATERF1(1)                                                                        --------->RAP2.6(3)                                   ----------->GT1                     <---------ATERF1(1)                                  --------->LBD16                     --------->ARR14(2)                       <-------GAMYB                                --------->LBD16<---------LBD16                      <---------MYB46(3)                           --------->LBD16 --------->SPL7                      ======================RAV                   <---------LBD16<-----------HVH21     <----------DOF2  <-----------RAV1(1)                         <---------HSFB2a(2)  <---------AtMYB61   <---------------AGL15        <---------LBD16                   <-----------------AGL1 <-------GAMYB   --------------->AGL15   <---------ANAC58                    ------>ZmHOX2a(1)<---------DEAR3(2)  ----------------->AGL2   <---------ANAC58      --------->ANAC46 --------->HSFB2a(2)--------->LBD16 ------>NtERF2----------->ARR10 ----------->RAV1(2) --------->AtMYB61 <---------ARR14(2)<---------MYB46(3) -->ATHB12<---------ZAT6<---------MYB52(1)--------->MYB52(1)----------------------->TaNAC69(2)   tggcaccctttagagtaagatgtgctgttgcttcccctggtaaaaaacgatacaccatcactctccttcccggagacggcatcggtccggaggttgtctc  30292900                                     <------MYB46(1)                                     --------->HSFC1(2)                                     --------->HSFB2a(1)                              --------------------->WRI1                             ------>ZmHOX2a(2)                           <---------ARR14(2)                           --------->ARR14(2)                           <---------ARR11(3)                           <---------AGP1                           --------->ARR11(3)                          <---------CCA1(2)                      --------->At4g35610                              <---------AHL20(2)                      --------->ZAT2 <------MYB83                     --------->AHL20(2)                      <---------ZAT2 <---------HSFC1(2)       <----------DOF2                  <---------At4g35610<---------HSFB2a(1) ---------->ID1--------->AHL20(2)   cattgccaaaaatgtgcttcagcaagctggatctttggaaggttctctctctctctcttgttccctttcttatttaatttagttgctgtttcatttcaat  30293000                                                                                   <------MYB83                                                                                   <------MYB46(1)                                                                                 <<<<<<<<<MYB98                                                                                 --------->ALFIN1                                                                                 <--------P                                                                                <---------ANAC46                                                                                <---------ANAC58                                                                                <---------ANAC58                                                          <---------YAB1        <-------GAMYB                                                       --------->GLK1(2)       <---------MYB46(3)                                                      <---------ARR11(3)       --------->MYB55(2)                                                      --------->ARR11(3)       <---------DEAR3(2)                               --------->CCA1(2)      <---------GLK1(2)       <---------TOE1(2)   ---                          ---------->DOF2           ----------->ARR10         <---------TOE2(2) <----                <---------ANAC46                  <---------ANAC58   <-----------GT1        ---------                <---------AtLEC2                  <---------ANAC58 --------->GLK1(1)     ---------->DOF2   tggggactactgttttctgcttggaattgaaagatgtgagcattagaaattggcgagattttgaatgggatttacaatcgtgggttgggctcaaaggcca  30293100                                                           --------->At4g35610                                                           <---------At4g35610          <---------AtMYB61                                                        <---------MYB52(1)              --------->MYB59                                                       <-----------HVH21             <---------ARR14(2)                                                       --------->LBD16          <----------DOF2                                                      <---------ANAC55(1)  <---------At4g35610    <--                         <---------ZAT14              <---------ANAC58     --------->ZAT2<------MYB83                     <---------DEAR3(1)               --------->ANAC55(2)  --------->At4g35610    ---                  <---------RAP2.6(2)                 <---------ANAC58     <---------ZAT2<------MYB46(1)       <---------MYB59   --------->ZAT14        <-----------GT1           --------->ARR14(2)  <------NtERF2 ------>LBD16     <---------ANAC58             <-----------GT1 ----------------->AGL1--------->ARR14(2) -----LBD16       <---------ANAC46   <------ZmHOX2a(1)<---------ANAC46    <---------ARR14(2)--------- >ANAC46          <---------ANAC58<-----------RAV1(2) <---------ANAC55(2)<------ZmHOX2a(1)  <--------   cggagattgcctaatacattgcgtctgtgctctgtatcaggagtggaatttaacttccgtgagatgcccattggaggagctgctttggatttggtcggag  30293200  Previous    Next  AGI:  At1g80555.1    Description:  3-isopropylmalate dehydrogenase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor. similar to 3-isopropylmalate dehydrogenase, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G14200.2); similar to 3-isopropylmalate dehydrogenase, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G14200.3); similar to 3-isopropylmalate dehydrogenase, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G14200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24764.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81315.1); contains InterPro domain 3-isopropylmalate dehydrogenase; (InterPro:IPR004429 Range:  from: 30291848    to: 30292633    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g80560.1    Description:  3-isopropylmalate dehydrogenase, chloroplast, putative. Identical to 3-isopropylmalate dehydrogenase 2, chloroplast precursor (IMDH2) [Arabidopsis Thaliana] (GB:P93832;GB:Q540Z4;GB:Q8W4P6); similar to 3-isopropylmalate dehydrogenase, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G14200.3); similar to 3-isopropylmalate dehydrogenase, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G14200.1); similar to 3-isopropylmalate dehydrogenase, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT1G31180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24764.1); similar to 3-isopropylmalate dehydrogenase, chloroplast precurs Range:  from: 30292655    to: 30295190    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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