Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              --------->ANAC58                                                                            --------->ANAC55(1)                                                                            <---------ANAC55(2)                                                                            --------->ANAC46      --------->ANAC58                                                      --------->ANAC58      --------->ANAC46                                                  --------->YAB1      --------->ANAC58         <---------AHL20(2)                      <---------YAB1  <---------YAB1              --------->AHL20(2)                     <-----------GT1        --------- --MYC3           --------->MYB46(3)        <---------At4g35610     --------->AHL20(2)      ------>ZmHOX2a(1) ->MYC3           --------->DEAR3(1) <---------YAB1        <---------ATHB12 --------->ANAC55(2) -ALFIN1 ---------->DOF2 <---------GLK1(2)  <---------CCA1(2)       <---------AHL20(2)    -----------   gtttatgctcgcaaagcgcatcgaccagattataaaatgatgtttcatctctcaaattgaaatcatccaatttatcatacgcatcaatagcctcctgaac  30291200                                         <---------ANAC58                                         <---------bZIP60(1)                                         --------->bZIP60(1)                                         <---------bZIP60(2)                                         --------->ANAC55(2)                                         --------->O2                                         <---------ANAC46                                         <---------TGA1a                                         <---------ANAC58                                         <---------ANAC55(1)                                         =============================================MYC_MYB                                         --------->TGA1a                                         <---------O2                                         <---------ANAC55(2)                                         <---------TGA2(1)                     ==============================bZIP_DOF                     ---------->DOF2    ----------->STF1               <---------ATHB12              --------->MYB52(1)      ----------->TGA1                 <------ZmHOX2a(2)           --------->ANAC55(2)        ----------->HVH21          <---------ARR14(2)        <------NtERF2=========================bZIP_DOF       --------->LBD16       <---------RAP2.6(3)           <-----------HVH21      <---------ANAC58      >>>>>>>>>AtERF-4              --------->TGA1a         <---------ANAC55(1)                <-----      --------->DEAR3(1)            <---------TGA1a         <---------ANAC58                 --------      >>>>>>>>>AtERF-3              <---------O2            --------->ANAC55(2)      ---------->DOF2      --------->RAP2.6(2)           <---------ANAC55(2)     <---------ANAC55(2)     --------->YAB1      --------->RAP2.3(3)           --------->ANAC55(2)     <---------ANAC46     --------->WOX13(1)      --------->RAP2.3(2)           --------->O2         --------->GLK1(2)     <---------MYB52(1)    --------->At4g35610        --------->ANAC46         <---------ARR14(2)    <-------GAMYB  -------- >LBD16<-----------HVH21       --------->ANAC58         --------->ARR14(2)    --------->At5g28300 >RAV1(2)  <---------ANAC55(2) --------->ANAC58         <---------GLK1(2)    ----------->GT1 --------   aagatgagccgtcacataacgcttaaagactatacgaaacgtgacgtgattcggcacagattccgtgtttccgatcatgcggttaatcaaagcccaagaa  30291300                                                                      <---------GLK1(2)                                                                      <---------ARR14(2)                                                                      --------->ARR14(2)                       <---------GLK1(2)                            --------->LBD16 ----ARR11(3)        --------->LBD16                              <---------LBD16 ->ANAC58           --------->ANAC46                            <---------ARR14(2)    --------->At4g35610 ->ANAC46        -------->P    <------ZmHOX2a(2)                --------->ARR14(2)  <-----------RAV1(2) ->ANAC58    <---------ICU4   <-----------HVH21      <---------MYB46(3)        <---------ETT(2)   atttcaaactcgaaatacttacccagaatatcgatcacccgattgaatgtctcggtggtatgtctgaatccggattctctctcgacccagttgaaaaact  30291400                                                                        ==================HOX2a_HOX2a                                                                      --------->ARR11(3)     --------                                                                --------->ZAT18              <-------                                                                --------->ZAT14              --------                                                                <---------ZAT14    ------>ZmHOX2a(1)               <---------ICU4                               --------->ARR14(2)     --------->LBD16              <---------ATHB12                              <---------ARR14(2)   ----------->RAV1(2)     <----------DOF2                                     ------>ZmHOX2a(2)   <<<<<<<<<TBF1   <-------    <---------DAG2                                       --------->YAB1 ------>ZmHOX2a(2)   <-------- --------->ANAC58            <-----------HVH21           =================================HOX2a_HOX2a --------->ANAC58      ----------->HVH21             <---------YAB1   <---------ARR11(3)<------ZmHOX2a(2)   ccaacgccttttgccaatcgttgctgtaacatgtgagagcttcgcatactgttttctgatcgtaactggactgatcttcttcttcctgagatcgaaactt  30291500                                                                                  ----------->RAV1(1)                                                                                --------->LBD16                                                                                <------NtERF2                                                                                ------>NtERF2                                                                               --------->ANAC46                                                                               --------->RRTF1(2)                                                                               --------->RAP2.3(2)                                                                               --------->RAP2.6(2)                                                                               --------->DEAR3(1)                                                                              --------->RAP2.3(1)                                                                              <---------LBD16                                                                              <------NtERF2                                        --------->SPL7                       <---------ATERF1(1) ->HSFB2a(1)                           --------->MYB52(1)                    <---------ORA47(2) --HSFC1(2)                           <---------SPL7                         <---------RAP2.3(1) ->HSFC1(2)                     <---------At4g35610      --------->WOX13(1) <---------DEAR3(1) --HSFB2a(1)                    --------->At4g35610   --------->ANAC58      --------->DEAR3(1) ---ARR10                  ----------->HVH21          --------->ANAC58     --------->ATERF1(1)   cgcatcatcgacatttgaaataggttttactgacagaagccgaacggagtaaggggaagcaatccgaactcgattgagtcgccgcaacaagagcattctc  30291600                          --------->ANAC58                          --------->ANAC58                                                       <---                          --------->ANAC46                                                       ----                          --------->ANAC55(1)                                                   <----                     <---------REM1(2)                                                          -----                     <---------ZAT14                                                            <----                     <---------ZAT18                    --------->ARR14(2)                      -----                     --------->ZAT14           --------->MYB52(1)                    ----------->HVH21                   --------->ZAT14            ----------->HVH21                   --------->GLK1(2)            --------->At4g35610              <---------MYB52(2)                   <-----------ARR10            <---------At4g35610       <-------TEIL------->GAMYB     <---------ARR14(2)          -----      <---------ALFIN1  --------->ANAC46    --------->At4g35610     --------->ARR14(2)       -------- <-----------GT1<---------ANAC46  <---------TOE2(3)     <---------ARR14(2)   --------->AHL20(2) <----   ttgtttcccctctccgctccctgtacacacgaaattagggttcatcatctaacgggcgaattttgacccgaatacccattttaaaatctgacccgaatac  30291700                 --------->At4g35610                 <------NtERF2                 <---------At4g35610          ---------->DOF2                                            --------->HSFB2a(1)      <---------PCF2                                                --------->GLK1(2) ------------AGL15                                                  <-----------ARR10             --- ----------->AGL15                                                  <---------ARR11(1)   <----------- -------------AGL3                                                  --------->ARR14(2)  --------->ATHB51 ------------>AGL3                                                  ------->TEIL        --------->ATHB12 -------------AGL2                                                  <---------ARR14(2)  <---------ICU4 ------------>AGL2                                    <------ZmHOX2a(2)                <---------YAB1 ------------>AGL1                                   --------->ARR14(2)                --------->ICU4 ->ARR14(2)    --------->ZAT18                       <---------ARR14(2)              --------->YAB1 - -------------AGL1         <---------ZAT6 <---------HSFB2a(1)    --------->ANAC46   <---------ATHB12<   catttatgggcccaaagcccgctggacttgtgttaatatttggaacatttgggccgatctatcttctacgaatctttcttaggcccatcataattgagcc  30291800             --------->AHL20(2)                                                                     <            <---------AHL20(2)                                                                     --            --------->AHL20(2)                                                                    <--    ----------->GT1             <------------CBF                                                  <-- --------->LBD16              <---------YAB1                     --------->LBD16   <-----------RAV1(1) ------>AtLEC2  <---------AHL20(2)                          <----------DOF2      ==================== -CBF ----------->GT1     --------->At5g28300   *TSS ---------->DOF2--------->GLK1(1) <---------REM1(1) -------->HSFB2a(2)      ----------->GT1   --------->YAB1--------->ARR11(3)      <----------DOF2  <-- ---------HSFB2a(2)   --------->MYB52(1)  <---------YAB1 <---------ARR11(3)--------->REM1(2)     <---   atccagaggtgaaaataaataatcgaacggttaatattggtttgattataaacacaaaagttctttccaggtctccttgtagtctttgttgtagtaaatg  30291900                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                  <--                                                                                                  ---                                                                                                -----            <-----------HVH21                                                                   -----           ==============================MYC_MYB                                               ------           --------->TGA1a                             ------>MYB83                           <------NtERF2           --------->bZIP60(2)                         --------->MYB52(1)                    ------>NtERF2           ================================MYC_MYB     ------>MYB46(1)                       <-------           --------->ANAC46          <---------ANAC46--------->AtMYB61                      >>>>>>>>>AtERF-3           <---------TGA1a        <--------P        --------->MYB46(3)                      ---------           --------->ANAC58      <-------GAMYB     --------->ANAC58                         ---------           --------->ANAC58      <---------MYB52(1)--------->ANAC58                         ---------           --------->O2     --------->ARR14(2)  <------NtERF2                               ---------           <---------O2     --------->GLK1(2)   <---------At4g35610                         ---------         <---------ALFIN1  <---------ARR14(2)   --------->At4g35610                         <-------- ------NtERF2--------->TGA2(2)  --------->LBD16 --------->LBD16                             >>>>>>>>>AtERF-4 ------->LBD16             --------->ARR14(2)  --------->ANAC58           --------->GLK1(2)--------->ERF1 -------ANAC58             <---------GLK1(2)   --------->ANAC58         <---------At4g35610--------->RAP2.3(1) -------ANAC46  <---------At4g35610  <---------ANAC58------->GAMYB     --------->ARR11(3)  --------->ORA47(2) ====================bZIP_DOF <---------LBD16  --------->ANAC46        <---------ARR11(3) <---------ATERF1(1) -------ANAC58  --------->At4g35610  <---------ANAC58<---------MYB59<------ZmHOX2a(1)    --------->ALFIN1 ------LBD16<-----------TGA1<---------ARR14(2)<---------LBD16  <----------DOF2       --------->At4g35610   gcgggagtcatccacgtcagcagtacccagattccggttgcgtttatgtccgcaaccaaacagagctttaggagagcttctgtgatcagatgtgccgcca  30292000                                           <---------DEAR3(1)                                           <---------ANAC58        --------->ARR11(1)                 <---------ANAC58    ---------->DOF2                        <---------ANAC46 -------->ANAC58                           <---------bZIP60(1) -------->ANAC58                        <---------DEAR3(1) -------->ANAC46                     <---------DEAR3(1) -------ALFIN1             <---------ARR14(2)  <---------DEAR3(2) ------>ZAT6           <---------LBD16 --------->ATERF1(1) ------>RAV1(1)    --------->AtMYB61<------NtERF2 ->NtERF2--------->MYB52(1)--------->ARR14(2) <---------DEAR3(1)                         <---------At4g35610 --->DEAR3(1)   --------->REM1(1)  --------->LBD16                                       <---------ZAT2 --RAP2.6(3)    --------->ANAC58   ------>NtERF2                                 <----------DOF2 >ATERF1(2)     --------->ANAC58  --------->LBD16 <---------DOF5.7(2)       <---------ANAC58 >RAP2.3(2)    --------->SPL7     <---------LBD16 --------->MYB52(1)        <---------ANAC58 >RAP2.3(3)    <-------TEIL<-----------ARR10 <------NtERF2                 <---------TOE2(3) >DEAR3(1)     --------->ZAT14   <---------HSFB2a(2)                     --------->WRKY12--------->ZAT2 >RAP2.6(2)--------------->AtSPL8--------->HSFB2a(2)         ------>ZmHOX2a(2)  --------->MYB52(2) -ATERF1(2)--------------->AtSPL3<---------LBD16--------->DOF5.7(2)    <-------GAMYB     --------->At4g35610   acactccaaagaaacggtacaccatcgcggttcttcccggcgatggcgtcggtaacgaagtgatcccagtcgctgttgacgttctttgtttagctgggtc  30292100  Previous    Next  AGI:  At1g80550.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G15010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17717.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 30289838    to: 30291596    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g80555.1    Description:  3-isopropylmalate dehydrogenase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor. similar to 3-isopropylmalate dehydrogenase, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G14200.2); similar to 3-isopropylmalate dehydrogenase, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G14200.3); similar to 3-isopropylmalate dehydrogenase, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G14200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24764.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81315.1); contains InterPro domain 3-isopropylmalate dehydrogenase; (InterPro:IPR004429 Range:  from: 30291848    to: 30292633    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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