Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       <---------ALFIN1                                                                                    --------->ZAT14                                                                                    <---------ZAT14                                                                                    --------->LBD16                                                                                  <---------LBD16                 <---------ARR14(2)                                           <---------ALFIN1                 --------->ARR14(2)                                       --------->MYB46(3)                 <---------MYB52(1)                --------->REM1(1)    --------->ARR14(2)         --------->YAB1                       --------------->AtSPL8    <---------ARR14(2)         -------->HAHB4                   --------->ARR11(3)           <------ZmHOX2a(1)      --------->YAB1                <---------At4g35610              <---------ANAC55(2)   <---------ZAT14 >ANAC58 <---------ICU4      --------->MYB52(1)   <-------TEIL       <---------TOE2(3)     --------->ZAT14 >ANAC58<---------YAB1  ---------->DOF2   <---------ARR11(3)<-----------GT1--------->AtMYB61   ------   tcgaggtctaataatagccgatagtcaaaagtaactgaagctaagaacttggtacatcaaattaacacattaaggaaccacaactccgcacagtttactt  30239500                                   <---------TOE2(3)                            <---------ALFIN1                          ------>MYB83                          ------>MYB46(1)                          ----------->RAV1(1)                      --------->At4g35610              <              <-----------GT1     >>>>>>>>>WRKY18    ----------->GT1                            -----          ------->TEIL  <---------MYB59             <---------TOE1(3)                           -----    <---------WRKY12    --------->MYB46(3) --------->TOE2(3)      ----------->GT1             -------  <-----------HVH21    --------->ANAC46  <-----------GT1        <---------At4g35610           <------ --------->AGL15     <-----------GT1<---------YAB1  <---------TOE2(3)                         -------   catatgtcaacgaatttttctattgacccaacacattgacgattaacttaatttagggtttaatagagcagataaaactcatcgtattccaatttctgct  30239600   <------ZmHOX2a(1) ---------LBD16                                                        <---------------------WRI1 ---->WRKY38(1)               ----------->GT1                     --------->TOE1(2)               --- ------>HVH21               ---------->DOF2                       --------->TOE2(2)        <------MYB83 -->ZAT2                <----------ID1                    --------->GLK1(2)                <------MYB46(1) ---At4g35610    <---------TOE1(2)             ---------->DOF2   <---------HSFB2a(1)     <--------P -->At4g35610    <---------TOE2(2)         ---------->DOF2<---------ARR14(2)             --------->ALFIN1   gaccaggaacatcacatcgcatgtttaagacaaagtaaaaactgagaaagaaagagagggaatcggaacatacgacgatgagcttgaagaggttggcctc  30239700                           <---------ZAT18                           --------->ZAT18                      <---------AHL20(1)                      --------->AHL20(2)                  <---------ALFIN1           <---------HSFB2a(2)                 <------NtERF2               --------->HSFB2a(2)              <---------ARR11(3)             <---------ATERF1(1)         --------->At4g35610                  --------->ARR11(3)     <------ZmHOX2a(1)--------->AHL20(1) --------->ZAT2                 >>>>>>>>>TBF1               <  <------ZmHOX2a(1)   <---------AHL20(2) <---------At4g35610         >>>>>>>>>TBF1                  < --->ZmHOX2a(1)--------->RAP2.3(3)       <---------ZAT2           >>>>>>>>>TBF1        --------->HSFB2a(2)   cttaggaggaagcgaagcccccattttattgcgctactgagagagctcgcgaagacgaagacggagaagaagaagaagaagatgttcttcgcgagttcga  30239800                            <---------ARR14(2)                            --------->ARR14(2)                       --------->ZAT18                       <---------ZAT18                       <---------SPL7                                                               -                      <---------ANAC58                                                   --------->YAB1                      <---------ANAC58                                                  <---------ATHB12                      <---------ANAC46                                               ================                     --------------->AtSPL3                                          <---------------AGL15                     <------NtERF2                                                  ------------>CBF<                     <-----------------------TaNAC69(2)                            <-----------------AG             --------->CCA1(2)  --------->At4g35610      ---------->DOF2   --------->ANAC58     ----- ---------ANAC58   --------->ALFIN1           <---------------------WRI1   --------->ANAC58 --------- ---------ANAC58   <---------DEAR3(1)   ------->GAMYB---------->DOF2     *TSS      ==================   tagggtgagagagagatagaggtggcgtactatccgcttcaaccctactgcgaaacaaagaaaggcacaactctcacaagacaaaacccaataagggtat  30239900                                                    <-------TEIL           <---------ANAC58                     --------------->AtSPL8 <---------AHL20(1)                             --------------->AtSPL3 --------->AHL20(2)     --------->WOX13(1)    --------->ARR14(2) --------->AHL20(1)   ------------>CBF        <---------ARR14(2)                                    - <---------AHL20(2)   <---------ATHB12    ----------------->AG                                      < -------->AHL20(2)  --------->WOX13(1)   <-----------------AGL1                                 <---- ===========================================================MADS_MADS                          ------ ---------AHL20(2)------------>CBF     ------>ZmHOX2a(1)          ------------>CBF         --------->MYB52(1) ------>TBP<---------ANAC58           <---------MYB59         --------->LBD16              ---------- -->GT1  --------->ARR11(3)         <------ZmHOX2a(2)       <---------LBD16           <-----------GT1 ===========================================================MADS_MADS     <---------MYB52(1)  -------   aaataaattagggtcttgtcttcaatcaatcttcttcgatcctaaccatatcggtacatgtttccggtttcaattcgtttgtctgatattacaaaacggt  30240000                                                         ------>MYB46(1)                                                       <---------MYB59                                                    >>>>>>>>>>WRKY26                                                    >>>>>>>>>>WRKY38                 --------->MYB52(1)                 >>>>>>>>>>WRKY43 <---------AHL20(1)                                 <-----------GT1 --------->AHL20(2)                               <---------WOX13(1) --------->AHL20(1)                             ------>MYB46(1) <---------AHL20(2)                             ------>MYB83 -------->AHL20(2)                            <---------MYB59 ---------AHL20(2)   ----------->GT1          --------->TOE2(3)                          --------->TOE2(3) -----MYB52(1)   ------>MYB83               ------->TEIL ------>MYB83               <-------TEIL --->At5g28300   ------>MYB46(1)       <---------At4g35610                    <------ZmHOX2a(2) -->MYB.PH3(1) --------->AtMYB61       ----------->RAV1(2)              <-----------GT1  <-----------HVH21 ---->GT1      <---------MYB59         --------->At4g35610              --------->MYB52(1)  ---------   tattaaattggatagaaccaaaccggttcaaaactggagacatctgaacctaattgaccaaatcaaatttgtattaaccgatcaaattcatcgtcaatcg  30240100                              <---------ICU4                                 <---------AHL20(1)                              --------->ATHB12                               --------->AHL20(1)                             --------->AHL20(2)                             --------->AHL20(2)                             <---------AHL20(2)                             <---------AHL20(2)                       ------>MYB83                                 ----------->RAV1(1)--------->YAB1     --------->DAG2    ------>MYB46(1)                          --------->ANAC46   <---------YAB1    ---------->DOF2 --------->DEAR3(2)                     <---------ARR14(2)--------->AHL20(2) >WOX13(1)     <---------ATHB12       --------->MYB46(3)   --------->ARR14(2)<---------AHL20(2)   <--   acactaaaaagtatcaaatcaaaccgacttattaattgcaaccgattacatctctcaatcgaatccaaaccagcataaataaattctaattagaaacatt  30240200                   <---------GLK1(2)                 --------->LBD16          --------->ZAT2         ------>MYB83                                                                            ====         --------->AtLEC2                                         --------->MYB52(1)             ----         ------>MYB46(1)                    <-----------GT1     --------->MYB46(3)              -----      --------->MYB46(3)                 --------->YAB1       ------>MYB46(1)                   ----- --------->HSFB2a(2)                 --------->ZAT6           ------>MYB83                  <-------- --------DOF2 --------->MYB52(1)    <---------YAB1 ------>ZmHOX2a(1)                        ---------   ctttccgaaccaagcagaccggattatttcaaatttttatcagtaataacatcctactcaaaccgaacaaaccgagtataacaagaattcttggaattcc  30240300     <------ZmHOX2a(2)                                        --------->ANAC58    <---------ARR11(3)                                        --------->ANAC46    --------->ARR11(3)                                        --------->ANAC58 ===========HOX2a_HOX2a                                   ------>ZmHOX2a(1)                         < -->ZmHOX2a(1)                                            =======================HOX2a_HOX2a    <---- ---->TOE2(3)                                ---------->DOF2---------->DOF2                    ------ ---->TOE1(3)                     ---------->DOF2   <---------HSFB2a(1)                 --------->At4g35610 -GLK1(1)                       ------>ZmHOX2a(2)   --------->HSFB2a(1)   ------>ZmHOX2a(2) --------- >GLK1(1)                       =================================HOX2a_HOX2a            <---------At4g35610   ttaagagatcatatgcaaaatgaaacaagtttgatctaaagacactctaaagaaacgttcctataagcaagttcgatctcttcttcagtcatctcaacgg  30240400  Previous    Next  AGI:  At1g80410.1    Description:  EMB2753 (EMBRYO DEFECTIVE 2753); binding. similar to hypothetical protein OsI_002822 [Oryza sativa (indica cultivar-group)] (GB:EAY74975.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45955.1); similar to hypothetical protein OsJ_002524 [Oryza sativa (japonica cultivar-group)] (GB:EAZ12699.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR-1 (InterPro:IPR001440); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 30232377    to: 30239873    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g80420.1    Description:  DNA repair protein, putative (XRCC1). similar to unnamed protein product [Vitis vinifera] (GB:CAO45954.1); contains InterPro domain BRCT; (InterPro:IPR001357) Range:  from: 30240112    to: 30242608    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version