Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       <---------MYB52(1)        <---------ARR14(2)  ------>ZmHOX2a(2)        --------->ARR14(2)--------->ARR14(3)     ------->GAMYB        <---------ARR14(3)    --------->ANAC55(2)   <-----------ARR10    <---------ANAC55(2)   --------->ARR11(3)  --------->LBD16                                     ---  --------->MYB52(1)      <---------ARR11(3) <---------HSFB2a(2)        --------->YAB1 --------->AHL20(2) ------->ANAC46   <---------YAB1    <-------GAMYB               --------->ARR11(3)     <---------AHL20(1) -->ARR11(3)   --------->GLK1(2)   --------->ANAC55(2)         <---------CCA1(2)       <---------AHL20(2) ---ARR11(3)  <---------GLK1(2)    <---------ANAC55(2)     <-----------HVH21 ------->TEIL     <------ -->GLK1(2) --------->LBD16<------ZmHOX2a(2) --------->HSFB2a(2)<---------ARR11(3)    --------->AHL20(2)   tacataacggaatccagaatttgattaagatcttattccgttatgttccagataattagagtgtcatatctctataatgaacttcatattaaatttcttt  30229700                                                                --------->ZAT6                                                               <---------At5g28300                                                              <-----------GT1                                                <---------AHL20(1)                               <---------------AGL15    --------->YAB1       <-------TEIL  ----------->GT1            --------->ARR11(3)      --------->AtLEC2----------->GT1           <---------ARR11(3) ------->ID1      --------->DAG2                --------->AHL20(1)                                  - ----DOF2        ---------->DOF2               --------->AHL20(2)    <---------YAB1         ---------   gtcttaacatgcattagaaaaaagggtttaaaactctattaagaactaaatatatcaataacatttacagtataattttaaaatttagaatgacaaaaga  30229800                                                                                                 <---                                                                                                 ----                                                                                          -----------                                                                                         <---------ANAC58                                                                                         <---------ANAC58                                                                                         ------------                                                                                         ------------                                                         --------->YAB1                  <-----------              <---------TOE2(3)                --------->TOE1(3)                         <----------- <---------YAB1     --------->ATHB12           --------->TOE2(3)            --------->HSFB2a(2)  ---- -------->TOE2(3)  --------->ICU4         <---------ATHB12 <---------YAB1   <---------HSFB2a(2) ----- ->DOF2<---------GLK1(2)              <---------ATHB12  <---------YAB1     <---------LBD16<----------   aacattatagaattttaagaaatgatttgggaatagacaaatcaataaacctcagactattatgagatttgtttttgtctggaaggaaattgcttaatca  30229900                                                                                               ------                                                                                              -------                                                                                          ---------->DOF2      --------->ANAC46                                                                 --------->At5g28300 ------ANAC55(2)                                        <---------GLK1(2)             ----------->GT1 ----->ANAC55(2)                                    <------ZmHOX2a(2)              --------->MYB52(1) ---->AGL15                                     --------->SPL7                  ===================== ----->AG                                     <-----------HVH21                 --------->CCA1(2) ----->AGL1                                   <---------SPL7                   --------->ARR11(3) ------AGL2                              --------->ANAC46                      <---------ARR11(3) ------AGL1                              ----------->HVH21                     --------->AGP1 <------ ------->GT1                             --------->ANAC58                      <---------ARR14(2) ---->MYB59      ------->TEIL            --------->ANAC58 <---------------AtSPL8<------ZmHOX2a(2) -----AGL15 ---------->DOF2              --------->MYB46(3)                    --------->ARR14(2)   ggtaataaactcaacaaagcaccttctaaacaaggagtcatccacgaccgtccgatcagattagtacatagaaacccttaagatccaacggttaaagatt  30230000                       --------->YAB1                       <---------ICU4                       --------->At4g35610                      --------->ICU4                        <---------At4g35610          --------->ANAC58                           <---------ATHB12          --------->ANAC58                         --------->WOX13(1)        <------ZmHOX2a(1)<---------YAB1          ------------>CBF                                  --       <----------ID1 <---------ATHB12           <---------ATHB12                                  <- --->CCA1(2)        --------->YAB1            <---------AHL20(2)                        --------->At4g35610 -->ARR11(3)  --------->GLK1(2)               --------->AHL20(2)       <---------At5g28300      ----- ==============HOX2a_HOX2a      ----------->GT1--------->WOX13(1)     <-----------GT1   <---------At4g35610 ---ARR11(3) <---------GLK1(1)<---------ZAT14<---------ATHB12       *TSS             ---------->DOF2   taagacagaaggacgaaatctgtaatcatgagtttagtaaaaaactaataaatcaatcagtcttctccctatttactgcaactctgcgaaagctgcaaaa  30230100                       <---------AHL20(2)                      <---------AHL20(2)               ------>ZmHOX2a(1)      --------->At4g35610      <---------At4g35610          ------>ZmHOX2a(1)                                   --------->HSFB2a(1) ------->AHL20(2)  --------->AHL20(2)                        <---------------------WRI1<---------HSFB2a(1) --------AHL20(2)  <---------AHL20(2) --------->REM1(2)  <---------------AtSPL8        ----------->GT1 ---->YAB1<---------ARR14(2) ---------->ID1     ---------->DOF2              <----------ID1   ataaaatcagccgattcctatttttttatttgtcttcctgtgaagaatgaaaaagaagaagagtacaacaagtactaagaagacgaagaaggtttcaaca  30230200                  <---------------AGL15                  --------------->AGL15                 <-----------------AGL2                 <-----------------AGL3                 ----------------->AGL2                 <-----------------AG                 ----------------->AGL3                 ----------------->AGL1             <----------DOF2             <---------DAG2           <---------ZAT2----------->GT1                                                           <-           <---------At4g35610                                                      ------>ZmHOX2a(2)          <---------TOE1(2)                                                  <XXXXXXXXXXXXXXXXXXXMIR157D       --------->ANAC46 <---------HSFB2a(2)      <-----------GT1          ------>ZmHOX2a(1) <--------    --------->KAN4(2)--------->GLK1(2)          <---------AHL20(2)        =================HOX2a_HOX2a <---------ANAC58----------------->AG      <---------YAB1           <<<<<<<<<TBF1 --------->ARR11(3) <---------ANAC58<-----------------AGL1  <-----------GT1         <<<<<<<<<TBF1    <---------ARR11(3)   atagcttattcgcagcttttccaattctggtaaaaaggcttcattaccattttatcgtctactcttcttcttcttcctgttttcgatcttctgtcttttt  30230300                                           <---------YAB1                                      <---------YAB1                                       <---------GLK1(2)          <---------ARR14(2)   --------->YAB1                  <-----------------AG  --------->ZAT2          --------->ARR14(2) <---------ARR11(1)                <-----------------AGL2<---------ZAT2 --------MYB52(1)           <---------CCA1(2)               --------->GLK1(1)       ------>MYB83 --DOF2 --------->LBD16     <---------ARR14(1)              <---------GLK1(1)       ------>MYB46(1)   cggtaatttccgaatttgtgtttcaagaccgtatcatcttatgctacgattgaatttgttggaattccagttttgggttcttcaccaagctcagaatttc  30230400                                                                 <-----------RAV1(1)                                                                --------->ARR11(3)                                                               <---------At4g35610                                                               --------->At4g35610  --------->AtLEC2                                                             ================RAV  <---------ANAC58      --------->ICU4                                         <-----------RAV1(2)  <---------ANAC58    --------->YAB1                                       <-------TEIL     ----------->GT1  <-----------HVH21                      <---------AHL20(2)<-----------HVH21     <---------ICU4   aaactgtcagaattgtttgaaagagtcaaacttgaactgggattttttttgacttagggttcgtcagatgttggatttgttaatccttgcagagtcgttt  30230500                                           <---------DAG2       <---------ARR14(2)           ------>ZmHOX2a(1)                             ------>ZmHOX2a(1)                  --------->ARR14(2)         <---------ANAC46                            --------->TOE2(3)          <-----------GT1                     <---------ANAC58                     --------->YAB1        <----------DOF2  --------->LBD16                <---------ANAC58               <----------DOF2 ---------->DOF2 <---------YAB1<---------ALFIN1    ---------->DOF2  <--   aaggggtttacaaaatgctttatttataatcctaaaagctatctactttctgatttttttcccccagttcttggtttgaattctaaagctgtttcctgtg  30230600  Previous    Next  AGI:  At1g80400.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G32600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45956.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 30230068    to: 30232467    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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