Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     --------->LBD16                          --------->At4g35610                          --------->ZAT14                          <---------ZAT14                        --------->ANAC46  <---------MYB52(2)              --------->ANAC58     --------->At4g35610         <-----------TGA1              --------->ANAC58     ----------->RAV1(2)   ------->GAMYB              --------->ANAC46     <---------At4g35610  --------->ANAC46            <---------ALFIN1   --------->ARR14(2)      -------->P           <---------REM1(2)   <---------ARR14(2)   <---------ATHB12                       <--------- ----------HVH21     <---------REM1(2)    --------->MYB46(3)  --------->YAB1    --------->ZAT6   gcatcacatcttcaacacgcttcttcacagcagtatccgctggaacaaacacaaatcaaccccatcgtcatatttttgtttaaaactacagaaccaggtt  30175600                                                                                  --------->YAB1                                                                                 <---------ATHB12                                                                              <---------AHL20(2)                                              ------>MYB46(1)           --------->ANAC58                                  --------->ARR14(2)                    --------->ANAC46                                  <---------ARR14(2)                    --------->ANAC58            <                             <-----------HVH21------>MYB83             --------->ZAT18              -                         --------->ARR14(2) <---------MYB59         --------->ANAC58                <                         <---------ARR14(2) --------->AtMYB61---------->DOF2  --------->AHL20(2)    < --RAV1(2)            <---------ANAC46--------->LBD16 --------->YAB1--------->ANAC58         --------   acacaattccaaaacgtagtagtatcgtatatgtcaaatccagagaccaaacccattcaaaatcaaagacaagcacacaataaatcatcaaatagcaatc  30175700                        <------NtERF2                       <---------At4g35610                       ------>NtERF2                      <---------ARR14(2)                --------->LBD16            ----------->RAV1(2)                        <---------LBD16            <---------ANAC58                          <---------LBD16          <-----------GT1                          --------->KAN4(1)   ----------->GT1    --------->ARR14(2)           <----------TaMYB80                          ------  ------>ZmHOX2a(2)  --------->ATERF1(1)          <---------KAN4(2)                            <----- ---------ARR11(3)<---------LBD16                 ---------->TaMYB80                           <----- -------->ARR14(2)<---------At4g35610           <------ZmHOX2a(1)                              ------ ---------ARR14(2)--------->At4g35610   --------->GLK1(2)                                   <-------- ---------AGP1 --------->ZAT2           --------->ARR14(2)                             --------->DAG2 ->WOX13(1) <---------ANAC58            <---------ARR14(2)        <------ZmHOX2a(1)  ---------->DOF2   tggatctgtaaattacctgcagcggagccgattaaacgagagaatatggaggaatatgcgggaatggaggatgcacgagtcgagagagaaaggtgagtgg  30175800                                            --------->ATERF1(1)                                            <------NtERF2                                          <---------ATERF1(2)                                          <---------RAP2.3(3)                            --------->DEAR3(1)  <---------ARR14(2)                           --------->ATERF1(1) <------NtERF2                           <------NtERF2 --------->SPL7                          --------->At4g35610 --------->LBD16                          ------>NtERF2----------->HVH21                          <---------ATERF1(1)<---------ANAC46                          --------->ZAT2<---------ATERF1(1)                   --------->ANAC58   --------->MYB46(3)                   --------->ANAC58 <---------ARR14(2)         <---------ANAC46 <---------ZAT2--------->MYB52(1)         <---------ANAC58 <---------At4g35610<---------DEAR3(1)         <---------ANAC58<---------ARR14(2)<---------ATERF1(1)       ------>NtERF2     --------->ARR14(2)------>NtERF2      <---------DEAR3(1)--------->ATERF1(1)<---------RAP2.3(1)   ----------->HVH21--------->MYB52(1)--------->DEAR3(2)                                xxxxxxxxxxxxx   --------->ANAC46--------->ANAC46<------ZmHOX2a(1)                                    --------->MYB52(1) --->ZAT18         ----------->HVH21--------->ARR14(2)                               --------->ANAC46 ----ZAT14      <---------ZAT14   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------ALFIN1 ----ZAT18   <---------ANAC58<---------LBD16<---------LBD16                      ------>ZmHOX2a(1) --->ZAT14   <---------ANAC58------>NtERF2--------->ATERF1(2)                   --------->ANAC46 -ANAC46<------NtERF2  <---------ATERF1(1)<---------DEAR3(1)              <---------GLK1(2)       <--   actctacgacggcgtgcctgcacgacggagccgcgcaggacccgacggcggagatggatttaagatgcgatgaaacgattctcctccacataatggtctc  30175900               <------MYB83              <---------TOE2(3)     <---------At4g35610              --------->MYB59     <-----------RAV1(2)                                         <------      --------->LBD16           ------>ZmHOX2a(2)                                            *TSS     <---------HSFB2a(2) <---------ARR14(2)                                                 <--------     --------->HSFB2a(2) --------->ARR14(2)                          --------->ANAC58<---------AHL20(2)    <---------LBD16   <---------ANAC58  <---------GLK1(2)            --------->ANAC58--------->AHL20(2)   <---------LBD16   ---------->ID1 --------->At4g35610        ------>ZmHOX2a(1)     --------->AHL20(1) xxxxxxx>smallRNA(fl3)<---------ANAC58<---------YAB1           <---------------AGL15--------->AHL20(2) -------GLK1(2)<------MYB46(1) <------ZmHOX2a(2)     ------>NtERF2 --------->MYB52(1)<---------AHL20(1)   gattcttcgggaaaattaggtttgtcgtttccgatctcagatgattctcagtctccgactacctccttcaaacggaaatgaattgaataaattgaagatt  30176000                             <---------MYB52(1)                       ------>NtERF2                      --------->DEAR3(1)                     --------->ATERF1(1)                     <------NtERF2                    <---------ATERF1(1)                    ------>NtERF2                     <---------WRKY18(1)                   --------->ETT(2)                  --------->WRKY12                   <---------DEAR3(1)                --------->WRKY38(1)                     --------                   ----------->HVH21    <------ZmHOX2a(2)                                    -------- ------CBF  <----------DOF2 <-------GAMYB --------->TOE1(2)                                  <------- -YAB1      <---------DAG2 <-----------RAV1(1)  <---------ANAC46                  --------->YAB1<----   gaacaagacttcgactttttggcgacggcctgttgggcctggatcatgcgacttgttgacccattatctaatttgaaacaaaaatcaaaatcaatatgta  30176100                                  <---------AHL20(2)                                  --------->AHL20(2)                                  <---------AHL20(1)                                  --------->AHL20(1)                                 <---------AHL20(2)                                 --------->AHL20(2)                <---------AHL20(2)                              <---------AHL20(2)                   --------->AHL20(2)       ----------->GT1       <---------AHL20(2)                    --------->AHL20(1)      <---------TOE2(3)      --------->AHL20(2)           --------->TOE2(3)             --------->ZAT6     ---------->DOF2      --------->ATHB12              <---------AHL20(2)        --------->ARR11(3) ->ANAC55(2)             <---------YAB1             <---------AHL20(2)            <---------ARR11(3) --->GT1                 --------->ICU4            <---------AHL20(1)    <---------TOE2(3) --ANAC55(2)          <---------ETT(2)             --------->AHL20(1)   --------->MYB52(1) -------GT1        <-----------RAV1(1)        <------ZmHOX2a(1)   --------->AHL20(2)------>ZmHOX2a(2)   acaagattaaagtaaaaacttctgtcgatgattaaataaatttttgtaggatatatattttcttaaaaattaattaacgcatatgatctaatactatctc  30176200                    --------->DAG2                   ---------->DOF2                --------->ANAC58                --------->ANAC58              <---------ANAC46        --------->ATHB12                                                                       ------       <---------AHL20(2)                                               <---------AHL20(1) <---------       --------->AHL20(2)                                           <---------AHL20(2)   <---------WOX13(1)    --------->ARR11(3)                                       <---------MYB52(1)        <---------MYB46(3)    <---------ARR11(3)                                ------->TEIL --------->AHL20(2)--------->At5g28300    <XXXXXXXXXXXXXXXXXXXXMIR841B         --------->At4g35610<-------GAMYB           ----------->GT1   ttattagattttattggctcgtaaagttgagttaagacttctcagaagaaaaaatgaaactccgttatatataatatatgttgaaacggtgattaactag  30176300        <-----------RAV1(1)              <---------ANAC55(2)                                    -----  --------->AHL20(1)                     --------->ANAC55(2)                                    <----  --------->AHL20(2)               <---------YAB1                                             <------  <---------AHL20(2)               <---------AHL20(2)                                        <-------  <---------AHL20(1)              --------->AHL20(2)   <---------YAB1   ----------->GT1      <------- ----->GT1           ----------->GT1     ----------->GT1    <-----------GT1         ------->GAMYB---- --GT1  <---------ANAC46    <-----------GT1          --------->YAB1 <---------TOE2(3)        <-------   ttaataaattttgtgggactagttcgtaaattacatttttattatgtaacatgaattacaattatccattaatgtagtatattcaaccgaatgagtcaac  30176400                              --------->At4g35610                             --------->ANAC46                            --------->MYB46(3)                      <---------ANAC58                           -------->P                           ---------->DOF2                           ------>MYB46(1)                   ----------->RAV1(1)      <----------DOF2      ------>MYB83                    --------->SPL7   <---------ALFIN1       <---------ALFIN1                <---------PCF5 ---->MYB46(3)            --------->MYB52(1)             --------->LBD16 -----MYB52(2)     --------->HSFC1(2)------>MYB83      <---------LBD16--------->ANAC58 ---DOF5.7(2)      --------->HSFB2a(1)                 --------->At4g35610           <---------DAG2 --WRKY45          <---------HSFB2a(1)                --------->MYB52(1)             ================ --WRKY12          <---------HSFC1(2)------>MYB46(1)<------ZmHOX2a(2) --------->ANAC58        ------- --->GAMYB    <---------LBD16------->GAMYB         <-----------HVH21<---------ANAC58 <----------DOF2 --WRKY38(1)  ------>ZmHOX2a(1)  -------->P--------->YAB1<---------SPL7           ------>ZmHOX2a(2)   gaccccaactttcatcctcggagtttcccaaccgctaccagcctaacatcatcgatcaccggaccacatagcgagccagagtgatcgcttttcatgtggt  30176500  Previous    Next  AGI:  At1g80230.1    Description:  cytochrome c oxidase family protein. similar to cytochrome c oxidase family protein [Arabidopsis thaliana] (TAIR:AT3G15640.1); similar to unknown [Populus trichocarpa] (GB:ABK95853.1); contains InterPro domain Cytochrome c oxidase, subunit Vb; (InterPro:IPR002124) Range:  from: 30174348    to: 30175993    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g80240.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44183.1); contains InterPro domain Protein of unknown function DUF642 (InterPro:IPR006946) Range:  from: 30176249    to: 30177731    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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