Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <---------ZAT6                 =====================HOX2a_HOX2a           --------->GLK1(2)      --------->ALFIN1          ---------->DOF2<------NtERF2                   <---------ARR14(2)    <---------ANAC58         <---------HSFB2a(2)    <----------ID1             <---------GLK1(2)    <---------ANAC46         --------->HSFB2a(2)   <------ZmHOX2a(1)           --------->ARR14(2)    <---------ANAC58        <-------TEIL   <----------ID1                      <---------ARR11(3) ---------LBD16  <---------ANAC58    <------ZmHOX2a(2)                       ----------->ARR10 --------->RAV1(2)<----------DOF2   --------->ARR11(3)          --------->ICU4 --------->ARR11(3) -->GT1          <---------ANAC58   <---------ARR11(3)     ----------->GT1<------NtERF2      <-------   aacctggagtgtgagtcttgctttacaaggtccagaaagatcaataggccgaaggagacaagtgtaattttcaggcaccaagattctggttttgactttg  30160200                                                  --------->ANAC58                                                  --------->ANAC58                               ----------->RAV1(2)<---------ETT(1)                               ================================RAV           <---------MYB52(1)                             --------->ANAC58     --------->ANAC46          <-------GAMYB                             --------->ANAC58     ----------->HVH21      -------->P                     <---------At4g35610          ------->GAMYB      <-----------ARR10                     --------->At4g35610         --------->MYB46(3)  --------->ARR11(3)                 --------->ANAC46             <-----------GT1        <---------ARR14(2)             -                 --------->ANAC58  <---------ANAC58                  --------->ARR14(2)      ------>ZmHOX2a(1)      --------->ZAT2--------->GLK1(2)      --------->YAB1   --------->AHL20(2)          --------->GLK1(1)      --------->At4g35610    ------->GAMYB <---------ICU4   <---------AHL20(2)          <---------GLK1(1) ---DOF2         --------->ANAC58  <---------ANAC58----------->RAV1(1)   <---------At5g28300---------   gaagaacaagctgtcttccaagcatctgcaaacgcctgcgttccattatcacccgacacaaattatataagtatctaccgttgctgtctgatttcctaaa  30160300                                                                                ------>NtERF2                                                                               --------->ANAC46                                                                               --------->ANAC58                                                                               --------->ANAC58                                                                               <---------TGA2(1)                                                                               --------->TGA2(1)                                                                            ----------->HVH21                                                                           <-----------HVH21                                                                          <---------MYB46(3)                                                                      --------->bZIP60(1)                                                                      <---------ANAC58                                                                      <---------O2                                                                      <---------ANAC58                                                                      <---------bZIP60(1)                                                                      <---------ANAC46   <----------DOF2                                                                   <-----------RAV1(1) <---------ANAC58                                                               <---------ZAT14 --------->bZIP60(1)                                       <---------HSFB2a(2)    <----------DOF2<---------ATERF1(1)                            ---------->DOF2             ----------->GT1   <---------DEAR3(2)    ----- ------>MYB83        <---------At5g28300              --------->ARR14(2) <---------At1g77200    <---- ------>MYB46(1)<---------ARR11(3)     --------->HSFB2a(2)<---------MYB52(1)----------->TGA1    ----- -------->P     --------->ARR11(3) --------->ARR14(2) --------->GLK1(2)  <---------DEAR3(1)    ------ ----->ZmHOX2a(1)<---------GLK1(1) <---------ARR14(2) <---------ARR14(2)<------NtERF2  <---------ANAC58 >TOE2(3)  <-------TEIL --------->At5g28300<---------TOE1(2)  --------->TOE2(3)<---------bZIP60(1)  <   tcctacccatagattcaagatttcacagtgaaaagaggtttctcgagggtttagcgaatcgttactttagtgtcgtcggtgacgccattgcctttggcac  30160400                             ------>ZmHOX2a(2)                            <------ZmHOX2a(2)                           <-----------ARR10                           --------->ARR11(3)                           <---------AGP1                   <------NtERF2       --------->ALFIN1                 <---------ARR14(2)   <-----------HVH21                 --------->ARR14(2) <---------MYB46(3)                                              <                <------ZmHOX2a(1)<-----------HVH21               --------->ALFIN1                   <           --------->ALFIN1<---------ARR14(2)                  --------->ZAT2                       <          <-------MYC3     --------->ARR14(2)                  <---------ZAT2                      --          ------->MYC3<---------MYB52(1)                       --------->At4g35610                <--         --------->O2<---------RAP2.6(3)--------->ETT(2)       <---------At4g35610              <---- ---->ANAC58    ===================HOX2a_HOX2a             --------->LBD16                      <---- --NtERF2<---------ANAC46 <---------CCA1(2)              --------->LBD16                        <---- ---->ANAC58    --------->ATERF1(1) <---------DEAR3(2)   <---------LBD16             --------->ARR14(2) >NtERF2 <---------O2<---------SPL7--------->ETT(1)      ------>NtERF2               <---------ARR14(2) ---------ICU4  ====================HOX2a_HOX2a        <---------LBD16<------ZmHOX2a(1)    <---------   caaaattgccaacgtggaggagccgttcggatctgggtcgggtcgagcgcgactgtctccgcgggagctggaggagcgattcgaacgaattcgcgtttgc  30160500                                                          --------->O2                                                          ----------->GT1                                                          <---------ANAC46 ---------->DOF2                                          <---------O2 ---------WRKY12                                         ------>NtERF2              <---------AHL20(2) ---------WRKY45                                         --------->LBD16       <---------GLK1(2) ---------WRKY38(1)                                      <------NtERF2         --------->ARR11(3) ------->WRKY18(1)                                      --------->DEAR3(1)     <---------ARR11(3) ---------HVH21                                       --------->ABI4(1)      <---------TOE2(3) -----ANAC58                ----------->GT1          --------->DEAR3(1) <---------ICU4         ------ -----ANAC58 <------ZmHOX2a(1)                      --------->DEAR3(2) <---------YAB1          <----- -----RAP2.6(2) --------->ATERF1(1)    ----------->GT1------>NtERF2    --------->ICU4         <------ZmHOX2a(1) -DOF2      <---------bZIP60(2)    ---------->DOF2 --------->SPL7    --------->YAB1 --------->AHL20(2)   ggtcaaagcgagtgaggaggctacgactagtagtaacaaaagagtgacaagagtaccgccgcgtgaataactcataatttagatttttaatttttaggaa  30160600                                  <--------HAHB4                                  --------->YAB1                                 <---------YAB1                                                   <--                               --------------->AGL15                                           ------      <-----------TBP      <---------ARR11(3)                                               ---------     *TSS                  <---------ARR14(2)                                              <---------YAB1 --->ARR14(2)              --------->ARR14(2)                          ------->TEIL      --------->YAB1 ----ARR14(2)              --------->ARR11(3)    <---------YAB1     <---------ATHB12   <-----------TBP   ccgaatggatttatagacattaaactcaagatactataattaggcttatgtatgattttagaataaacaaatgaatatagatagagtctatttataatca  30160700               --------->ARR14(2)           ------>ZmHOX2a(2)           ====================HOX2a_HOX2a          =====================HOX2a_HOX2a          <------ZmHOX2a(2)                                        <---------YAB1         --------->ARR14(2)                                        --------->ICU4         <---------AGP1                                         --------->ICU4     <---------MYB52(1)         --------->AGP1                                         <---------ZAT6   <---------bZIP60(1)         --------->ARR11(3)                                 <---------ZAT14      --------->bZIP60(1)    ----------->RAV1(1) ------>ZmHOX2a(1)               --------->ATHB12        ----------->STF1   -- -------ICU4   <---------GLK1(2)                       ------>ZmHOX2a(1)        <---------TOE2(3)---- --->YAB1<---------ARR11(3)                            <---------------AGL15  ----------->TGA1------- >YAB1   <---------ARR14(2)                            <---------YAB1  ----------->GT1<---------YAB1   gaattacaacagatctagattccctcctctctaccttgagagtgagatttagttttcctgattgtagtgattatggtgaaatgacgttatgtttagccac  30160800                                                                                     <---------REM1(1)                                                                                 <---------YAB1                                                                                 <---------WOX13(1)                                         <---------ICU4                        --------->ATHB12    --           --------->ANAC58   --------->LBD16                              --------->ATHB12       <--           --------->ANAC58  <---------LBD16                           --------->ATHB51  <------MYB83 --------->GT1              <-----------RAV1(2)                        --------->ATHB12  <------MYB46(1) ------>DOF2                <---------LBD16                           <---------YAB1<---------TOE2(3) ---->RAV1(1)<---------ARR11(3)   <---------ARR14(2)         <-----------GT1 <---------WOX13(1) -----   aaagaaaaatggcaagatagtttctagttttcaggggatttagtaatgacattctttgaaaattttccatacattattgattgattaatgtaggtgatca  30160900            ----------->GT1                                                      ------->TEIL   <---------AHL20(2)                                                     --------->AHL20(2) ------->YAB1                         ------->TEIL                        <---------AHL20(2)        - -------ATHB12                 <---------AHL20(2)                    ----------->GT1          <------ ---->WOX13(1)                 --------->AHL20(2)                  ---------->DOF2       <-----------GT1   atcatataatcaaacagaaaattgcaagatgaaataaatgtatgtgttttgacccaaaaaaaaaaaaaaaaaagaaataaatgtatgtgataaacccttt  30161000                                                                             <---------ZAT14                                                                             --------->ZAT14                                <-------GAMYB                              --------->ANAC46                               <---------MYB46(3)       --------->YAB1  --------->ZAT18            --                      --------->DAG2               <---------ARR11(3)   <---------ZAT18          ---- -------->ZAT6       ---------->DOF2               <---------GLK1(2)<-----------RAV1(1)          ---- ----DOF2      --------->AHL20(2)         ---------->DOF2        <---------AHL20(2)        <---------YAB1   tatcactaatttagaaataaaaaaaaagtttgatggttatgggctaaagcccagataatcagggtattatatgttgcactaaactaagcccatatgatta  30161100  Previous    Next  AGI:  At1g80170.1    Description:  polygalacturonase, putative / pectinase, putative. similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT1G70500.1); similar to polygalacturonase [Citrus sinensis] (GB:ABM67700.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 30158300    to: 30160605    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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