Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               --------->LBD16                                         <-------TEIL                       --------->ANAC55(2)                                       <---------PCF2           --------->ICU4                                       --------->TCP20--------->ANAC58      --------->ANAC46                                      <------MYB46(1) --------->ANAC58     <---------LBD16                                      <------MYB83   <-------TEIL<---------ICU4                    --                                     <---------MYB46(3)        <----------DOF2                    <--        <---------ARR14(2)           --------->MYB55(2)------------>CBF <-----------HVH21         ---        --------->ARR14(2)     <------------CBF   <---------HSFB2a(1)  <----------DOF2       -------- -------CBF                 ------------>CBF----------->TBP <---------ARR11(3)            <------ZmHOX2a(1)   tgtcagtgtgtatatgtataattctgaagaaacaattggtgggtccataaaaacgttcgcaatgtctttatgactttcacgggataactcgaggagcgaa  30134600             <---------GLK1(2)                                                     ----------->HVH21           --------->ICU4                                                         ------>ZmHOX2a(2)           <---------YAB1                                                        --------->CCA1(2)         --------->YAB1                                                          <------ZmHOX2a(2)    <---------AHL20(2)                                                          --------->AGP1   --------->AHL20(1)                         <---------ARR11(3)                <---------AGP1   <---------AHL20(2)                <----------DOF2                            --------->ARR14(2)   <---------AHL20(1)               <---------ANAC58                            <---------ARR11(3)   --------->AHL20(2)               <---------ANAC58                            <---------ARR14(2) ------->AHL20(2)              --------->ATHB12<----------TaMYB80             ----------->ARR10 <---- -------AHL20(2)               <---------ICU4 --------->ARR11(3)         <---------ZAT18      ------- ------>AHL20(2)              --------->ICU4  --------->ARR14(2)         --------->ZAT18      ------- --->GT1<-------TEIL <---------GLK1(1)    --------->ANAC46         <-----------RAV1(1)      <--------   ataaataaaattcatgattctcgatttctgcatttattgctttcacgagatattcccttcattcgtcttgtgttgggccctagatccgaccgcttcgtga  30134700        --------->O2        <---------O2        =============================================MYC_MYB        =============================bZIP_DOF        <---------TGA1a     ----------->HVH21    --------->MYB46(3)    --------->DEAR3(2)  --------->ARR14(2) <---------PCF2                   <---------AHL20(2) -----DOF5.7(2)           <----------DOF2 <----------CDC5           <-----------RAV1(1) -->DOF5.7(2)        --------->DOF5.7(2) <---------At4g35610  <---------TOE2(3) ---->HVH21    ------>ZmHOX2a(1) <---------AHL20(2)   <-----------GT1              <---------AHL20(2) -ANAC46--------->TGA1a   <---------DAG2 --------->At4g35610 <-----------GT1  <---------YAB1   acgggacccgacgtctccttatcgtttactttttttttatttgggctgagcccattttcccatttacgatatgttgggctattattcaatttgtattttg  30134800                                                                                     <---------ICU4                                                                                    <---------YAB1                                                                                  <---------ICU4                                                                                  --------->YAB1                                        <------------CBF   <---------YAB1 --------->TOE1(3)   <---------ZAT14        --------->MYB52(1)              <---------TOE1(2)      <---------ATHB12   --------->ZAT18      --------->MYB46(3)                <---------TOE2(2)      --------->ICU4     -   --------->ZAT14      <---------MYB52(2)      ---------->DOF2           --------->TOE2(3)  <-------   <---------ZAT18    <-----------GT1------------>CBF <-------TEIL      ------->TEIL--------->ICU4---   aactgggcactgtatttgtttttgtaacaaaccgtagatagcaattgataaaaagtttcatatgtttgattctgaaccttaaaatcattattttgttgta  30134900                                               ------->PIF4                                               ------->MYC3                                               ------->PIF5                                               ------->MYC2                                               <-------MYC3                                               <-------PIF5                 <-----------HVH21                            <---------DEAR3(1) <-------PIF4              --------->ANAC55(2)                           <---------ANAC46    <-------MYC2              <---------ANAC58     <---------ARR14(2)<-------MYC3            <-------MYC4              <---------ANAC55(2)     --------->GLK1(2)<---------ANAC46   --------->DAG2                  <---------ANAC58     --------->ARR14(2)------->MYC3  --------->ANAC58            ------->MYC3    <---------GLK1(2) <---------O2   --------->ANAC58            <-------MYC3             <---------- -------->ANAC46      <---------ANAC58  ---------->DOF2       <---------ALFIN1  --------->At4g35610 --REM1(1)            <---------ANAC58 XXXXXXXXXXXXXXXXXXXX>MIR822       <---------ANAC55(1) ------>ZAT6  --------->MYB52(1)     --------->ANAC46       ----------->RAV1(1) <---------At4g35610   acacgagaatctgaataaacggacgcgtggtctgtgcatacgaaaagcacatgcccatggagcaacacatgtaatacgtgtcatcttactagtaacatga  30135000                         --------->ANAC58                     --------->ANAC58                     --------->ANAC58                  --------->TOE1(2)             ----------->GT1                               --------->bZIP60(2)            --------->ANAC58        --------->YAB1   --------->ANAC58             --------->ANAC58           --------->WRKY45        <---------ICU4 ---------->DOF2           <-------TEIL---------->ID1    <----------DOF2 -GT1  --------->ICU4--------->ANAC46 --------->ICU4  --------->ANAC58 <----------DOF2    --------->ANAC58   catatatgaataatgaagtaactacgaaagcatcaaaacaaagattagaagttcataagcctcgtcccattttctttgagactttgactatcacccaaat  30135100                                                                                <---------ARR14(2)                                                                                --------->ARR11(3)                                                                                --------->ARR14(2)                                                                        <------MYB83                                                                        <------MYB46(1)                                                                       <---------MYB46(3)                                                                     <-------GAMYB                                                                     <------NtERF2                                                                     <---------At4g35610                                                                     <---------ZAT2                                                                     --------->ATERF1(1)                                                                     --------->At4g35610                                                                    <---------ERF1                                                                    <---------MYB46(3)                                                                    <---------ATERF1(1)                                                                    ------>NtERF2                                                                    --------->MYB55(2)                                                                    <---------DEAR3(2)                                                                    <---------RAP2.3(1)                                                                   <---------RAP2.6(2)                                                                   --------->ATERF1(2)                                                                   <---------ANAC46                                                         ==================================HOX2a_HOX2a                                                     <---------YAB1<---------ATERF1(2)                                                 ------>ZmHOX2a(2) <---------RAP2.3(3)                                                <------ZmHOX2a(2)  <---------RAP2.3(2)                           --------->At4g35610  --------->CCA1(2)  <---------DEAR3(1)                           <---------At4g35610 --------->ARR14(2) --------->ATERF1(1)                          ----------->HVH21    --------->ARR11(3) --------->RAP2.3(1)                 ---------->DOF2               <---------ARR11(3) <------NtERF2--------->HSFB2a(1)                 --------->SPL7                <---------ARR14(2) --------->DEAR4(2)               <---------SPL7                  <---------AGP1    <---------RAP2.3(1)        --------->AtLEC2----------->RAV1(2)    --------->AGP1    <---------ATERF1(1)    <---------ICU4 <---------ARR14(2)    <---------RAP2.6(3) ---------->DOF2       <---------DEAR4(2) --------->LBD16 --------->ARR11(3)    <-----------HVH21  <---------WRKY38(1)   <---------DEAR3(1)  ------>ZmHOX2a(1) --------->ARR14(2)   --------->DEAR3(1)  <---------WRKY12  ---------->DOF2    --------->HSFC1(2) <---------ARR11(3) <---------At4g35610 <-----------HVH21------>ZmHOX2a(2)     <---------HSFC1(2) <--   acaaatcttcatgcagtcgtacagccgtctgatgcagttcaaggtcaaagatctgatgatcgacaagcggcggctggtcgaagttcctgataatgccact  30135200              --------->ZAT6          --------->ATHB51      ------>NtERF2                   <--------ATHB1          <---------WRKY38(1)     --------->ANAC58                 <---------ICU4          <---------WRKY12     --------->ANAC58                 -------->HAHB4  <-------GAMYB    --------->SPL7                   <---------AHL20(2)  <------MYB83    --------->ATERF1(1)     <---------LBD16<---------YAB1<------MYB46(1)   <---------ATERF1(1)    --------->MYB46(3)    <---------AHL20(2)                <---------ICU4  ----------->HVH21 --------->YAB1   <---------ATHB51<---------MYB46(3)  --------->ANAC55(2) -------STY1(1)    <---------TOE2(3) --------->AHL20(2)<--------P    <----------DOF2               <-   ctaggggacgccttgaacactatggtaaaccacggctaaataattgttatttttttggttggagtcaaccgttttaagtatcaagaattactaacaagac  30135300                                                  ----------------->AGL1                                                 ------>NtERF2                                              --------->At4g35610                                              --------->ATERF1(1)                                              <---------At4g35610                                              <------NtERF2                       <------ZmHOX2a(2)                                             --------->ABI4(2)               <------NtERF2                                             <---------MYB46(3)             <---------LBD16                                             <---------ATERF1(1)            --------->LBD16                                             --------->MYB55(2)            <---------ANAC46                                             ------>NtERF2                 <---------LBD16                                            --------->ALFIN1             --------->ZAT2                                            <---------DEAR3(1)           <---------ZAT2                                       ------->TEIL                <---------ANAC58    <--------ATHB1                                     <---------SPL7                <---------ANAC46   <---------YAB1                      --------->MYB52(1)   <---------MYB52(1)      <---------ANAC58   <---------ATHB12                   <------NtERF2    <----------DOF2       --------->ANAC46<------NtERF2--------->YAB1                  ------>NtERF2   --------->At4g35610     --------->ANAC58<---------LBD16 --------YAB1   <---------MYB52(1)<---------At4g35610     --------->ANAC58--------->ATERF1(1)  <-----   tattcttggtatcaaaccggtggcaaaccgagttagagctgtaccggtggctgccaaaccaggccaatggctgggagccgggggatcaatgatagtagag  30135400                                                                                     <------NtERF2                                                                                    ------>NtERF2                                                                                    <---------RAP2.3(1)                                                                                   <---------DEAR3(1)                                                                                   <---------ANAC46                                                                                   <---------RAP2.3(3)                                                                                  --------->RAP2.6(3)                                                                             <---------DEAR3(1)                                                                            <------NtERF2                                                                           --------->LBD16                                                                           ------>NtERF2                                                                           <---------ATERF1(1)                                                                          <---------ATERF1(2)                                                                          --------->ATERF1(2)                                                                          <---------DEAR3(1)    <----                                                                          --------->DEAR3(1) --------                     --------->ANAC58                                    <---------LBD16     <-------                     --------->ANAC58                                    --------->ATERF1(1)---------    --------->MYB52(1)               <------ZmHOX2a(1)              --------->O2----------->TGA1<---- ----ZAT6 --------->At4g35610    --------->TOE1(2)                  <---------O2----------->HVH21   ttggacaaacagagcggaagtgcaagaaaacagtacataggaatggtgaccatgctcgacgttgtggctcacatcgccggcgatgacggcgagagtgggc  30135500  Previous    Next  AGI:  At1g80090.1    Description:  CBS domain-containing protein. similar to CBS domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G15330.1); similar to SNF4b [Medicago truncatula] (GB:AAO61675.1); contains InterPro domain Cystathionine beta-synthase, core (InterPro:IPR000644) Range:  from: 30134997    to: 30136833    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version