Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               --------->GLK1(2)                                            <---------GLK1(2)                                            <---------ARR14(2)                                     --------->DEAR3(1)                                     --------->At1g77200                                      -------                                     <---------ETT(1)                                         <------                                  <-----------GT1                                             -------                              --------->GLK1(1)                                               <------                             <---------GLK1(2)                                               <-------                             --------->ARR14(2)  --------->At4g35610                  <-------GAMYB                             <---------ARR14(2)  <---------At4g35610                  xxxxxxxxxxxxxxx                           --------->LBD16  --------->ARR11(3)                   ----------->HVH21                          --------->LBD16   --------->ARR14(2)                   *TSS<---------MYB46(3)                         <---------LBD16    <---------ARR11(3)                 --------->At4g35610                        <---------LBD16   ----------->ARR10                  <-------------DYT1                   <---------GLK1(2)--------->DEAR3(2)                       <-----------RAV1(2) -->LBD16          <---------ARR14(2)--------->DEAR4(1)<----------DOF2     <-----------HVH21<------ZmHOX2a(1) ---AGL1           --------->ARR14(2)--------->DREB2C(2)          <<<<<<<<<TBF1<---------At4g35610   ctatgctcttctcgcattgccgattctcccggattttcaccgacaagattctgctctctttgctcttcttcttcagccttcaggtgactgttgaggagct  30122500                                              --------->LBD16                                              ------------>CBF                                             --------->ANAC58                                             --------->ANAC46                                             --------->ANAC58                                             --------->RAP2.6(2)                                          <---------ARR14(2)             <---------ICU4                                          --------->ARR14(2)            --------->AHL20(2) -->At4g35610    <---------LBD16    --------->LBD16            --------->At4g35610 ---ZAT2       --------->ARR14(2)  --------->LBD16             <---------At4g35610 -->ZAT2       <---------ARR14(2)  <---------LBD16       <----------DOF2<---------ATHB12           <- ---At4g35610  --------->GLK1(2)  <---------LBD16   <---------At5g28300 ----------->TBP           --- ----ARR10    <---------GLK1(2)   <---------ANAC46 <---------ICU4   --------->LBD16              ---- xxxxxxxxxx>smallRNA(le3)        <---------LBD16  --------->ICU4    ------------>CBF             <---   gagcgagcgagcgagagaatcgggagagtttgttttccggggaaaaaccgcaattactgctatatagctccccaataaatgccaaaacaaaaaatcaaat  30122600                                  <---------ICU4                                     ------->GAMYB                                  --------->YAB1                                     --------->DEAR3(1)                                 --------->ICU4                                     --------->MYB46(3)                          <---------CCA1(2)                                       <---------ARR14(2)                    --------->DEAR3(1)                                            --------->MYB52(1)                   --------->ANAC58                                               --------->ARR14(2)                   --------->ANAC58                                              <---------GLK1(1) --------TOE2(3)   --------->ANAC46                                       <---------ARR14(2) ------->DOF2     --------->RAP2.6(3)           <---------ATHB12       <---------ANAC58       ------- ----->AHL20(2)  --------->MYB52(1)   ---------->DOF2                  <---------ANAC58    --------->ANAC58 ------AHL20(2)<-----------HVH21 <---------ATHB12                      <---------ANAC46    --------->ANAC58   taaagtttgtcaatgggcatcacggcccaaatctaataatcaaaggcccaataacttgattcgacaatacttagcgggtttggataaccgcctaagcatc  30122700                                           --------->At4g35610                                         ------>ZmHOX2a(2)                                        <---------At4g35610                                       <---------ARR14(2)    ----------->GT1                                       --------->ARR14(2) --------->MYB52(1)        ------>NtERF2                ------>ZmHOX2a(1)    <---------ARR14(2)       --------->DEAR3(1)          ----------->RAV1(2)   <------NtERF2                              -     ------>NtERF2                ------>ZmHOX2a(1)  <----------ID1                                --     <---------ATERF1(1)    <-----------GT1<---------At4g35610     --------->AHL20(2)              --    <---------ALFIN1    <-----------GT1<---------ARR11(3)<---------SPL7                            -- -->GLK1(2)    <---------AHL20(2) ==============HOX2a_HOX2a--------->SPL7      ---------->DOF2     --   tgttcgacaccgcctattttttttttttacttactcctcctgatctgctgatataaggccgaacgggaataaaaaaaaaaaaaaaggaagaagcgactca  30122800                                                                                        <---------TOE2(3)                                                                                        <---------TOE1(3)                                                                               --------->At5g28300                                                                              <---------ANAC46                                                                             --------->ALFIN1                                                                             <---------DEAR3(1)            <---------TOE1(3)                                                <------NtERF2            <---------TOE2(3)              <---------ARR11(3)               ------>NtERF2 -------->LBD16                     --------->ZAT18                        <---------ANAC58 ------->LBD16                    --------->At4g35610                      <---------ANAC58 ------->ANAC58                ---------->DOF2  --------->ANAC46           <---------ANAC46         - ------->ANAC46      <----------DOF2<---------ZAT18                     <-----------RAV1(1)     <---- ------->ANAC58   <-----------GT1 <---------At4g35610            <------ZmHOX2a(2) <---------ARR14(2)   cccgaaaatgttttagggtttttctttactcgattaagctcactagttcttcgcaacgtagttagagatcgacactggcgcggtggatttagggtttttt  30122900                                                                                           <---------ARR14(2)                                                                                           --------->ARR14(2)                                                                                           <---------PCF2                                                                                          <------NtERF2                                                                                         <---------MYB46(3)                                                                                        <---------ANAC58         <---------ZAT14                                                                <---------ANAC58         --------->ZAT14                                                                <---------ANAC46     ------>NtERF2                                                             --------->LBD16   --------->LBD16                                                             ------>ZmHOX2a(1)   ------>NtERF2                                                             ----------->RAV1(2) <---  --------->ANAC46                                                          ------>ZmHOX2a(1)<-------TEIL <---------LBD16<------NtERF2             <---------ANAC46                 <---------ALFIN1<---------TCP16(1) ----->ZmHOX2a(1)                    --------->ANAC58                  <---------At4g35610--------->ATERF1(1) -------GT1   <---------DEAR3(1)     --------->ANAC58               <---------MYB52(1) <---------LBD16   tcctccgcgactacgctcggcgtttcgatttggaaccctaagctatgtggaacaacaacgatggtatgcccttagctcctcctggtactggcgggtccat  30123000                                             <---------ATERF1(1)                                             ------>NtERF2                                            --------->RAP2.3(2)                                            --------->RAP2.3(3)                                            <---------ALFIN1                                            --------->DREB2C(2)                                            --------->RAP2.6(2)                                            --------->RRTF1(3)                <---------At4g35610         --------->RRTF1(2)             <---------At4g35610            --------->DEAR3(1)             --------->LBD16               --------->ORA47(2)          ------>MYB83                     --------->ERF1          ------>MYB46(1)                  --------->RAP2.6(1)        --------->DEAR3(1)                 --------->RAP2.3(1)        --------->AtMYB61                  --------->RRTF1(1)        <---------ALFIN1                   --------->DEAR4(2)       --------->bZIP60(2)                 --------->ATERF1(1)       <---------ZAT2                     --------->At4g35610       --------->ZAT2                     <---------ATERF1(1)      <---------ATERF1(1)                 <---------At4g35610      ------>NtERF2                       ------>NtERF2     <---------ALFIN1                     --------->LBD16     --------->DEAR3(1)                   <---------RAP2.3(1)    --------->ATERF1(1)                <---------ATERF1(1)    <------NtERF2                     <---------ARR14(2)   <---------ATERF1(1)                --------->ARR14(2)   ------>NtERF2--------->At4g35610  --------->ATERF1(1)   <---------RAP2.6(3)              ------>NtERF2  --------->RAP2.3(3)               --------->ABI4(2)  --------->ATERF1(2)               <---------ATERF1(1)  --------->RAP2.6(2)              <---------DEAR3(1)  <---------ATERF1(2)             <---------ZAT18  --------->ANAC46              --------->ANAC58                     <---------ETT(2)  --------->bZIP60(1)           <---------DEAR3(1)                  --------->WRKY18(1) <---------At4g35610  --------->DEAR3(1)            --------->ANAC58                   <-----------HVH21    --------->At4g35610  --------->RAP2.3(2)           --------->ANAC46                  --------->LBD16    <------ZmHOX2a(1) --------->RAP2.3(1)    ------>ZmHOX2a(1)--------->ANAC46       <---------LBD16----------->RAV1(2) ------ICU4 --------->ANAC46   <---------LBD16<------NtERF2    ------>ZmHOX2a(1) ------>ZmHOX2a(1)   gatgccgccacctcccgctgctcatccttcttacacggcgcttccgccgccttctaatccgactcctccggtcgagcctactcctgaggaagcggaggct  30123100                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   --                                                    <------NtERF2                                 ---                                                   ----------->RAV1(1)                        -------                                               <---------DEAR3(1)                             -------                                              --------->SPL1(2)                               -------                                              --------->SPL7             <---------------------WRI1<-                             --------->At4g35610   ------>NtERF2      <-------TEIL         <---------ARR14(2)                             <---------At4g35610  <----------ID1    <---------ARR14(2)     --------->ARR14(2)               --------->ANAC58             <---------SPL7          --------->ARR14(2)    ===========               --------->ANAC58          <------------------SPL14   <---------GLK1(2)     <------ZmHOX2a(1)      <------ZmHOX2a(1)     ------->TEIL--------->MYB52(1) <------ZmHOX2a(1)           <------ZmHOX2a(1)   aagcttgaggagaaggcccgaaaatggatgcagctaaattccaaacggtacggcgacaagaggaagtttggattcgttgaaactcagaaggaggacatgc  30123200         --------->TGA2(2)        <-----------HVH21       ===============================================bZIP_DOF       --------->ANAC58       --------->ANAC46       --------->O2       --------->TGA1a       <---------TGA1a       --------->ANAC58       --------->bZIP60(2)                                                      <---------ICU4 ------->ZAT2                                                                   <---------AHL20(2) ------->At4g35610                                                              --------->AHL20(2) --------At4g35610                                                              --------->ATHB51 ------->TGA1a                                                                 <---------YAB1 --------ZAT2                                                                  --------->ICU4 --------O2                                                                  <---------ICU4 ------->O2                                                                  --------->YAB1 --------->RAV1(2)<------ZmHOX2a(2)                                         --------->ICU4 --->NtERF2      <---------ARR11(3)                                         <---------YAB1 -->ANAC46       --------->ARR11(3)                                    <---------ANAC58 -->ANAC58   <------ZmHOX2a(1)                                         --------->ANAC55(2)   <------MYB83 -->ANAC58<-----------RAV1(2)                                          <---------ANAC58      <------MYB46(1) --------TGA1a ----------->ARR10                                    <---------ZAT14      <---------STY1(2) ========================HOX2a_HOX2a       <----------DOF2          --------->ZAT14 <-----------GT1   cacctgagcacgtcaggaagatcatcaggctagttttcttctcttctttctctaccatttcgaaatacagtttacttgataattattttctggctaggtt  30123300                                                                                                -----                                                                                                -----                                                                                                -----                                                                                             <-------                                                                                            <--------                 <---------AHL20(2)                                                        --------->ANAC55(2)                 <-----------GT1                                                           <---------ANAC58             <------ZmHOX2a(1)                                                             --------->ANAC46       <------MYB46(1)                                                                     <---------ANAC55(2)       <------MYB83                                                                        <---------ANAC58    --------->ARR14(1)               --------->TOE1(2)                                  --------->GLK1(2)    --------->CCA1(2)               --------->At4g35610        <------ZmHOX2a(2)     <---------ARR11(3)   <---------ARR14(2)               --------->ZAT2            --------->ARR11(3)   --------->ANAC58   --------->ARR11(1)               <---------ZAT2           --------->GLK1(1)     --------->ANAC46   --------->ARR11(3)               <---------At4g35610 <---------ZAT14    <-----------HVH21<-------- <---------TOE2(3) --------->ANAC55(2)         <----------DOF2<---------ARR11(3)   --------->ANAC58   tctaagatttggttaggatttacttattttgagactgaagctgcgatttctttcttacttcagagatcatggtgatatgtcatccaagaaattccgtcac  30123400  Previous    Next  AGI:  At1g80060.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62709.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) Range:  from: 30121102    to: 30122481    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g80070.1    Description:  SUS2 (ABNORMAL SUSPENSOR 2). similar to splicing factor, putative [Arabidopsis thaliana] (TAIR:AT4G38780.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ50159.1); similar to putative splicing factor Prp8 [Oryza sativa (japonica cultivar-group)] (GB:BAD67606.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ66837.1); contains InterPro domain Cupredoxin (InterPro:IPR008972); contains InterPro domain PRO, C-terminal (InterPro:IPR012984); contains InterPro domain PRO8NT; (InterPro:IPR012591); contains InterPro domain PROCN; (InterPro:IPR012592); contains InterPro domain Mov34/MPN/PAD-1 (In Range:  from: 30122945    to: 30132704    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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