Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   ------>ANAC46 ------>ANAC58 ------>ANAC58 -------ANAC55(2)                                                                          <---------ZAT18 ------>ANAC55(2)                             <---------YAB1                         --------->MYB111(2) ----TEIL                                    <---------AHL20(2)                      <---------MYB46(3) ----SPL7                     ----------->GT1--------->AHL20(2)                     <--------P --------AtSPL8   <---------------AGL15      <---------AHL20(1)                 <------ZmHOX2a(1) ->MYB111(1)      --------------->AGL15     --------->YAB1                   <---------LBD16 ------->AtSPL8  ----------------->AGL3------->GAMYB                         <-----------RAV1(2) --------AtSPL3--------->CCA1(2)      --------->MYB46(3)            <---------MYB52(1)<-------GAMYB ->MYB59      <---------ARR11(3)    <-----------GT1             <---------At4g35610<-------GAMYB   --   acgcaatttctctcaagataccaattgaagagaggttttaaccacattataatttgaacttgtgtttgctgttttgttttcaggaggttgttgtgcaatt  30101900                                                              --------->At4g35610                                                          ------>ZmHOX2a(1)                                                       <------NtERF2                                                     <---------ANAC58                                                 --------->ATERF1(1)                                                 --------->ALFIN1                                               <---------ANAC58                                               <---------ANAC58             <----------DOF2                                               <---------TGA1a<---------At4g35610    <---------MYB52(1)                                               ========================================bZIP_DOF                                               <---------O2 --------->REM1(1)    ---------->ID1                                  <---------ANAC58   <---------ANAC58 <---------AHL20(2)                                --------->ARR11(3)  --------->ATERF1(1)<---------AHL20(2)                            <---------YAB1     <---------ANAC46       --------->AHL20(1)                     <-------GAMYB<---------ANAC58<---------DEAR3(1)  --------->AHL20(2) -------->DOF2       ====================================MYC_MYB      <---------AHL20(1)    <-------TEIL   gaaaagaatttttgttttgttttcgttgttatgagagcttgagcttgagccgtgggcgtccttcatctgtaatttattcttttgtccgtttgggttcaaa  30102000                                                                              --------->ANAC58                                                                              --------->ANAC58                                                                             --------->SPL7                                                                  --------->ZAT18                                                                  <---------ZAT18                                                               <---------ANAC58                                                               <---------ANAC58                                                 <----------DOF2<---------ZAT18                                     <---------MYB52(1)        <---------ANAC46 ----------->RAV1(2)                                   <---------ANAC58     ---------->DOF2    <---------SPL7                                   <---------ANAC58   --------->YAB1     <---------------AtSPL3    <-           --------->ICU4     <------------------------ANAC81 --------------->AtSPL8         --------   ttgatattttgtaatgttgatatgtgttattctgttttcgtttgtcaacttctttatcaaaagttgtgtgccctattcgtacgcctgcgaagtcccccca  30102100                                                                     <---------MYB46(3)                              <-------GAMYB                       <---------MYB46(3)                             --------->MYB52(2)                  --------->ALFIN1             <------                           <---------MYB52(1)                   <XXXXXXXXXXXXXXXXXXXXMIR171A  <------                          ------------>MYB.PH3(2)            <---------ARR14(2)               <------                         --------->MYB111(1)        --------->ANAC46<---------DEAR3(1)       <-------TEIL                         --------->MYB46(2)         --------->ANAC58<---------AtMYB61      <---------ARR14(2)                         <---------MYB46(3)         --------->ANAC55(2)                    --------->ARR14(2)                         --------->MYB111(2)        <---------ANAC55(2)                    <---------GLK1(2) --------ICU4           <--------P                  --------->ANAC58--------->ALFIN1  -------->P ->ANAC46         <---------YAB1                  <-----------GT1<---------AtMYB61   <-----------GT1   agaattgcccatgttgagttttgatggtagttagttgtctatgttttatattttacgcaaggggatagtggtggtgctcagtcaaatttacccgattcgt  30102200                                         --------->ANAC58                             ----------->TBP ------>NtERF2                             --------->AHL20(2)                         --------------->AGL15                        ----------------->AGL1                        ----------------->AGL3         <------------CBF<---------------AGL15        --------->ATHB12----------------->AGL2 --------->CCA1(2)    <-----------GT1    --------->ANAC58            ----------->RAV1(1) ---ANAC58       <------------CBF ---------->DOF2                  <---------------------WRI1 ---ANAC46     <------ZmHOX2a(1) <---------AHL20(2)         <---------AHL20(2)  --------->MYB52(1) ---ANAC58   <---------TOE2(3) ----------->TBP       ----------->GT1<----------ID1            *TSS   gagaaatgagtcattgaggaattgttaccatatatataaagacatgcctccgctctggttatttagttatgcgacaaaaacaaaacagaccgcatagaat  30102300                                                                                              -------                                                                                              <------                                                                                        <---------At4g35610                                                                                        --------->At4g35610                                                                                      ---------->CDC5                                                                                   --------->At4g35610                                         --------->At4g35610                       <---------ZAT2                                         <---------At4g35610                     <--------P   ------>ZmHOX2a(1)      ------->GAMYB                    <------NtERF2                          <---------TOE2(3)     --------->MYB46(3)                --------->RAP2.3(1)                   <-----------RAV1(2)   <-     <---------MYB52(2)         <---------ANAC58      --------->DAG2   <---------MYB52(1) <---------ZAT18   ----------->RAV1(1)          <---------ANAC58     ---------->DOF2  <-------GAMYB<---------At4g35610 <-------TEIL            <----------DOF2----------->RAV1(1)    <---------GLK1(2)<---------MYB52(1) --   agatgcaacaaaccaagtgtatagaaactttattccttggcgcagcaaaaaaaaaaaaagggatagagtctccgttgattcaggtagctcagcgtcctct  30102400                                                                                                  <--                                                                                                 ----                                                                                               ------                                                                                         <-----------TGA1                                                                                   <-----------TGA1                                                                                   <-----------HVH21                                                                                  --------->DEAR3(1)                                                                                  --------->ANAC46---                                                        --------->ATHB12        <---------At5g28300                         <-------GAMYB                 <---------YAB1         ----------->HVH21<-----          <---------MYB46(3)                    <---------ZAT6      <---------ANAC58     <-----------HVH21 -->At4g35610           --------->MYB52(2)    <---------ANAC46      <---------ANAC58    --------->ANAC46 ---At4g35610           <---------MYB46(3)  --------->ZAT14         <---------ANAC46    --------->DEAR3(1) --------At4g35610    <XXXXXXXXXXXXXXXXXXXXXMIR833-3P<---------At4g35610  --------->REM1(1)   ------- ------->At4g35610<---------ANAC46          <---------ZAT14------>ZmHOX2a(2)<---------At4g35610<-----   gagatgaaacgattgttgttgtttgtttgttgattttagtttttagtttagtggaagatgatcggtaatagcgtctacatctcaccgtcaccgtcaccgt  30102500                                                  <-----------GT1                                            <------MYB83                                            --------->MYB52(2)                                            <---------MYB46(3)                                           <---------AtMYB61                                          <---------MYB52(1)                                          <---------MYB55(1)  <---------ALFIN1                        <--------P  --------->AtMYB61 ------->GAMYB        <-------GAMYB --------->MYB46(3) --------->TOE2(3)   <---------MYB46(3) -------ETT(1)      --------->TOE1(3)   --------->MYB55(2) ----->SPL7       -------->P            <---------DEAR3(2) --->ORA47(1)     ------>MYB83         <---------DEAR3(1) -------->HVH21   ------>MYB46(1)     <------NtERF2 ----SPL7        <---------ALFIN1    ------------>AtMYB77 -->DEAR3(1)    --------->AtMYB61   <---------DEAR3(1)                                   <---------YAB1 ------HVH21    <---------ALFIN1------->TEIL<------MYB46(1)  <----------DOF2 <-----------GT1   ccgaccactctctctcgcccaaccctaatctctgcatctcggcggttggtttctactgtcttcctttctctctctctatttactacaaattttgatttca  30102600                                                                              <---------ICU4                                                                          --------->ICU4                                                                     --------->YAB1                                                                    <---------YAB1                                                              --------->MYB55(2)                                                              --------->MYB111(2)                                                              <---------MYB46(3)                                                            <-------GAMYB <---------YAB1                                                           <---------MYB46(3) --------->YAB1                                                        --------->At4g35610  --------->ICU4                                                        <---------ZAT2  --------->YAB1         ------                                                        --------->ZAT2 --------->ICU4          ======                                                        <---------At4g35610--------->YAB1   ------>ZmHOX2a(1)     <---------ARR14(2)                     --------->At4g35610     --------->ICU4--------->ARR11(3)    --------->GLK1(1)                       <---------At4g35610<-------GAMYB <---------YAB1 =========    <---------GLK1(1)                     <-----------RAV1(2)<--------P<---------YAB1      <---------ALFIN1   atttgggtttccgatttcgatttcaattttgaatttgatggtcttcagatggaagagcagctggttgttgatgatgatgatgatgaccttgctcctcctc  30102700                                                 --------->ANAC58                                                 --------->ANAC58                                            --------->bZIP60(1)        ------>MYB46(1)                                            <---------bZIP60(1)        ------>MYB83                                          <-------GAMYB <---------ANAC58  --------->YAB1                                       ----------->RAV1(2)   <---------CCA1(2)                                      ------>NtERF2     <---------ANAC58 <---------ATHB12        ------>ZmHOX2a(2)          <---------TGA2(2)<---------ANAC58 <---------MYB59                -      <---------ARR11(3)          ----------->TGA1  <---------ANAC58 <---------MYB111(1)         ----      --------->ARR11(3)        --------->YAB1  <---------LBD16      <---------MYB46(2)          ---- >ZmHOX2a(1)                    <---------ICU4 <-----------GT1      --------->ANAC58          ------- ==============HOX2a_HOX2a     <---------YAB1 ----------->HVH21     --------->ANAC58 --------->GLK1(2) ==============HOX2a_HOX2a     --------->ICU4<-----------HVH21     ------->TEIL  >>>>>>>>>TBF1<------   caatccctgatctcgatattgaccttgaagatgatgatgacgcctgttgtcacggcttgcttcatatcgcacctaatcacgaagaagaaactggatgcga  30102800  Previous    Next  AGI:  At1g80000.1    Description:  similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT1G15280.2); similar to Os01g0595100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043467.1); similar to glycine-rich protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD52900.1) Range:  from: 30097817    to: 30102058    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g80010.1    Description:  FRS8 (FAR1-related sequence 8); zinc ion binding. similar to FRS6 (FAR1-related sequence 6), zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G52520.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62693.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78024.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1 (InterPro:IPR004330) Range:  from: 30102294    to: 30104739    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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