Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              --------->SPL7           --------->CCA1(2)           --------->ARR14(1)          <---------ARR14(2)          --------->ARR11(1)                                   <--------P                           -          --------->ARR14(2)                     <---------GLK1(1)                                  -         <------ZmHOX2a(1)                       --------->GLK1(1)      <-----------HVH21           - ----AHL20(1)                      <---------ANAC58      <-----------RAV1(1)                       -- --->AHL20(1)        <----------DOF2   --------------->AGL15<---------MYB46(3)--------->ZAT14-------- ----ARR11(3)       <---------ICU4 <---------ANAC58    <---------MYB52(1)     <---------ZAT14--------   atatgtatacaggatacggccatctttgctcttggtgacttccctgttgagaaatccgtctgtgggtagattactgtcactgaagtagaactcaaccttc  30053100                                                                                                    <        ---------->DOF2                                                                            <-     --------->At4g35610       <---------LBD16                               <---------TGA1a       <- -------->AtMYB61             <---------LBD16                                ======================== ------>GAMYB     --------->ANAC58                                          <---------ARR14(2)    <-- -------->YAB1 --------->TOE1(2)                                       <-----------GT1            <-- ------->MYB46(3) --------->ANAC58                                 --------->AHL20(2)--------->ANAC58 ->TOE2(3)    <---------HSFC1(2)           --------->CCA1(2)     >>>>>>>>>GATA-1     --------->ANAC58 ->TOE1(3)    --------->HSFC1(2)--------->LBD16                ----------->GT1     <--------P     <--   aaccatcagcaaaagaagctacgaaaatgaaatcggggaaattagagatgagagtgaaggaagcatagataaattacagacctgggtaagcaacttcttg  30053200 <---------ARR14(2) -------GAMYB --------MYB46(3)                                                         <---------TGA1a --------DEAR3(2)                  <---------ZAT2                         <---------O2 =======MYC_MYB   --------->ATERF1(1)                                     =========================== -------RAP2.6(2) <------ZmHOX2a(1)--------->ZAT2   --------->CCA1(2)   --------->CCA1(2) -------DEAR3(1)--------->ALFIN1   --------->At4g35610                 *TSS                 <-------- -------ANAC46 <------ZmHOX2a(1)   <---------At4g35610          <---------ZAT14       --------->ALFIN1   gcggtttcttcgttgaaggaggaggccatggctctctagctgcaattgaagaagagacgacgagagtgaagaagagacgagagagagagaggggaattga  30053300                                            <---------WRKY18(1)                                           ----------->HVH21                                         <---------ANAC58       <---------GLK1(1)                 <---------ANAC58      <---------AGP1                   ------>NtERF2      <---------ARR11(3)             <---------ANAC58      --------->ARR11(3)             <---------ANAC58     <---------CCA1(2)              --------->ZAT14                                 <----------DOF2    <------MYB46(1)                 <---------ZAT2                             <----------DOF2    <------MYB83                    --------->ZAT2                     <---------AHL20(2)  <--------P   --------->TOE2(3)   --------->ALFIN1                    --------->ATHB12 ==========MYC_MYB--------->YAB1--------->ZAT6                        <---------AHL20(2) ----CBF------>ZmHOX2a(2)      <---------At5g28300 <-----------HVH21  --------->AHL20(2)   aggggttggatctcatacattaataggcccattaacagtgctggcttgacctctgtcacataggcccatctattaattgggcttaacttttatttctatc  30053400                     ------------>CBF                                                 <------NtERF2              <------MYB46(1)                                                        ------>NtERF2              <------MYB83                                                           --------->RAP2.6(2)            <--------P                                                              --------->ATERF1(2)          --------->MYB55(2)                                                        <---------DEAR3(1)          <---------MYB46(3)                                                        <---------ATERF1(2)          --------->ATHB12                          <---------ANAC58               --------->At4g35610   --------->At4g35610                              <---------ANAC58               <---------LBD16   <---------At4g35610      --------->ZAT18  <---------ARR14(2)  <-------TEIL  --------->ARR14(2)   gtttgagcttagtggttgggctattcaatgtcccctatagaatagagtattcttacgtccaaacaggctcgtcttcttcgaaatcggcggcaaaatgcca  30053500                                                                   --------->LBD16                                                                  --------->LBD16                                                       <-------TEIL------>NtERF2                                                      --------->CCA1(2)                                                     --------->ARR14(2)                                                     <---------ARR14(2)      --------->AtLEC2                                                     --------->ARR11(1) <---------ARR14(2)   <------ZmHOX2a(2)                                                    --------->GLK1(1)<---------ANAC58       <--------                                                    <---------GLK1(1)<---------ANAC58       ---------                                                <---------ANAC46  --------->ANAC46   <---------RAP2.6(3)                       <-----------GT1        --------->MYB52(1)  <---------LBD16    <---------SPL7                     <---------GLK1(1)       <---------ATHB12    <---------HSFB2a(2)--------->RAP2.6(2)                     --------->GLK1(1)       ----------->HVH21   <---------LBD16   --------------->AtSPL3               --------->ARR14(2)            ----------->TGA1--------->GLK1(1)   --------->ANAC58  <-               <---------ARR14(2)        ------------>CBF    <---------GLK1(1)   --------->ANAC58 ---             --------->LBD16            --------->TOE2(3)   --------->HSFB2a(1)---------->DOF2    ---           <---------LBD16       ----------->HVH21 ----------->ARR10<------NtERF2--------->ANAC46 <--   tcaaaccctccaaaccggaactgatttcccttactgtgacgacctcaatgacggagatacgagagttcccggcgtttccatacaagccgtactcgatcca  30053600                                            <------NtERF2                                            --------->ATERF1(1)                                           <---------ATERF1(1)                                          <---------ANAC58                                          <---------ANAC58                                         <------NtERF2                                    -----------                                         --------->ATERF1(1)                  <---------AHL20(1)                                        <---------ATERF1(1)                   --------->AHL20(1)               --------->ZAT18         <---------DEAR3(1)                <---------AHL20(2)             --------->ZAT18 --------->HSFB2a(2)                   ----------->GT1      <-----------GT1        <---------YAB1       <---------HSFB2a(2)               <---------ALFIN1<---------AHL20(2) -ARR14(2) ------->TEIL      <---------------AGL15           <<<<<<<<<<<<<<<<<LFY  <---------AHL20(2) >ARR14(2)---------->DOF2    --------------->AGL15           >>>>>>>>>>>>>>>>>LFY<---------AHL20(2) -----ZmHOX2a(2)            <-----------------AGL2          --------->PCF2   <---------AHL20(2) ------>AGP1 <---------ZAT18<-----------------AG          --------->ANAC58 <---------AHL20(2) ------>ARR14(2)            <-----------------AGL1        --------->ANAC58 --------->AHL20(2) -------ARR14(2) <----------DOF2   --------->DAG2       ---------->DOF2  --------->AHL20(2)         <   gatcgatttcatgaatgcgctctatcaatttctcgataagggaggcgtctccatgctcgaaagccccactggtatatatatatatttttttttccacatt  30053700        <-----------GT1                                                                           ---       <---------YAB1                                                                        --------     <---------ICU4                                                                 --------->ARR11(3)    <---------MYB52(1)                                                              --------->GLK1(2)  ----------->GT1                                         <----------DOF2           <---------ARR11(3) ------>AGL1                                   ------>ZmHOX2a(2)               ----------->GT1   <--- ------ZmHOX2a(2)                            --------->ARR11(3)               ----------->GT1<-------   ggatcagttattactcagtagtaagtaagtagactcacttagggtttgatctctctctctctttctctctctcttagggactggaaaatctctaagcatt  30053800      --------->ZAT18                                       --------->HSFB2a(1)      <---------ZAT18                                <---------WRKY18(1)      --------->ZAT14      --------->ANAC46         --------->WRKY12      <---------ZAT14      --------->ANAC58         --------->WRKY38(1)   <-------TEIL --------->ZAT14       ----------->HVH21            ----------->HVH21    <--------P <---------ZAT14  <---------ANAC58                 <---------WOX13(1) <---------TOE2(3) ------>At4g35610 <---------ANAC46     --------->ANAC58     --------->HSFC1(2)               <------ZmHOX2a(1) ->YAB1    --------->ZAT14 --------->ANAC58   <---------LBD16 --------->GLK1(2)             <-------- ------ARR11(3)   <---------ANAC58     --------->ANAC58-------->ZAP1  --------->DAG2  --------->ICU4 --ICU4    <---------ZAT14----------------->AGL1 <------ZmHOX2a(1)    <---------TOE1(3)--------->YAB1   atctgcagtgctctccagtggcttactgaccgcaaggagaaacgaaactcaggattgaccgaagaatcccataaggttgatggaaacgatgatgaggacg  30053900                                                                         --------->ARR14(2)                                               --------->YAB1            <---------ARR14(2)                                               ----------->GT1          ------>MYB83                            --------->ANAC46  <---------ATHB12          ------>MYB46(1)  --------->ATHB12 <-----------GT1 --------->At4g35610                --------->AtMYB61    <------ZmHOX2a(1) --ID1       <------ZmHOX2a(1)  <---------At4g35610                <----------ID1       <---------LBD16   agcccgattggatgaggaattttactctcaacgaagcagatggagccaatggtgacaagagcatcaaaaacaccaaatccccattttctctcaggaagca  30054000  Previous    Next  AGI:  At1g79880.1    Description:  La domain-containing protein. similar to ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1), RNA binding [Arabidopsis thaliana] (TAIR:AT4G32720.1); similar to ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1), RNA binding [Arabidopsis thaliana] (TAIR:AT4G32720.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN66913.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain RNA binding motif (InterPro:IPR014886); contains InterPro domain Lupus La protein; (InterPro:IPR002344); contains InterPro domain Nucleotide-binding, al Range:  from: 30050921    to: 30053271    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g79890.1    Description:  helicase-related. similar to helicase-related [Arabidopsis thaliana] (TAIR:AT1G79950.1); similar to hypothetical protein OsI_018235 [Oryza sativa (indica cultivar-group)] (GB:EAY97002.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73493.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45899.1); contains InterPro domain DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020); contains InterPro domain DEAD2; (InterPro:IPR010614); contains InterPro domain Helicase, ATP-dependent, c2 type; (InterPro:IPR006555); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro domain DNA/R Range:  from: 30053548    to: 30057096    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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