Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    <----------DOF2 >ATHB12 >ATHB51 -ICU4<---------TOE2(3) --->AGL15 ----AGL15 ---->AGL1                                                                                      ----- -----AGL3                                                                                      <---- -----AGL2           --------->ANAC58                --------->TOE1(1)                        <------ ---->AGL2           --------->ANAC58               <---------LBD16                           ------- ---->AG            <-------TEIL                    ------>ZmHOX2a(1)                         ------- -----AG            <---------ZAT18                --------->TOE1(2)                  ------>NtERF2 ---->AGL3          --------->ZAT18             --------->ARR14(2)              <---------At5g28300 - -----AGL1         --------->ALFIN1       ------>ZmHOX2a(1)                <---------TOE2(3)  <------   gaaactttaagaaaatcagaggtgcgcaagagattagcaacttcctccacaatcctcggagggatgtcttctctattgatgttaccgaggccaaggaggt  30052900                                                          <------ZmHOX2a(1) ---->ARR14(2)                                <---------ANAC46 -----ARR14(2)                                <---------ANAC58   <----------DOF2 ---HSFB2a(1)                                 <---------LBD16    <---------DAG2          ----------->RAV1(1) -->HSFB2a(1)    --------->MYB46(3) --------->MYB46(3)  <---------TOE2(3)   --------->ARR14(2) <----- -->HSFC1(2)  <----------ID1    <---------MYB52(2)  <---------At4g35610     <---------ARR11(3) ------ ----->ZmHOX2a(1)<---------MYB52(2)-------->P <---------ANAC58<-----------GT1           --------->REM1(1) ---HSFC1(2)<---------------AtSPL8--------->MYB52(1)--------->At4g35610    <---------CCA1(2)   <-----   tcctcatacgagagaaggaacaaaccagaggcaaactaaccactagtttcgggcatctaaggaataacttttcaactatatctgtatgctacaacaatat  30053000            --------->SPL7           --------->ARR14(1)           --------->CCA1(2)          --------->ARR14(2)          --------->ARR11(1)                                   <--------P                           -          <---------ARR14(2)                     --------->GLK1(1)                                  -         <------ZmHOX2a(1)                       <---------GLK1(1)      <-----------HVH21           - ----AHL20(1)                      <---------ANAC58      <-----------RAV1(1)                       -- --->AHL20(1)        <----------DOF2   --------------->AGL15<---------MYB46(3)<---------ZAT14-------- ----ARR11(3)       <---------ICU4 <---------ANAC58    <---------MYB52(1)     --------->ZAT14--------   atatgtatacaggatacggccatctttgctcttggtgacttccctgttgagaaatccgtctgtgggtagattactgtcactgaagtagaactcaaccttc  30053100                                                                                                    <        ---------->DOF2                                                                            <-     --------->At4g35610       <---------LBD16                               <---------TGA1a       <- -------->YAB1                <---------LBD16                                ======================== -------->AtMYB61 --------->ANAC58                                          <---------ARR14(2)    <-- ------>GAMYB  --------->TOE1(2)                                       <-----------GT1            <-- ------->MYB46(3) --------->ANAC58                                 --------->AHL20(2)--------->ANAC58 ->TOE1(3)    <---------HSFC1(2)           --------->CCA1(2)     >>>>>>>>>GATA-1     --------->ANAC58 ->TOE2(3)    --------->HSFC1(2)--------->LBD16                ----------->GT1     <--------P     <--   aaccatcagcaaaagaagctacgaaaatgaaatcggggaaattagagatgagagtgaaggaagcatagataaattacagacctgggtaagcaacttcttg  30053200 <---------ARR14(2) -------GAMYB --------DEAR3(2)                                                         <---------O2 --------MYB46(3)                  <---------ZAT2                         <---------TGA1a =======MYC_MYB   --------->ATERF1(1)                                     =========================== -------DEAR3(1)--------->ALFIN1   --------->ZAT2   --------->CCA1(2)   --------->CCA1(2) -------RAP2.6(2) <------ZmHOX2a(1)<---------At4g35610                 *TSS                 <-------- -------ANAC46 <------ZmHOX2a(1)   --------->At4g35610          <---------ZAT14       --------->ALFIN1   gcggtttcttcgttgaaggaggaggccatggctctctagctgcaattgaagaagagacgacgagagtgaagaagagacgagagagagagaggggaattga  30053300                                            <---------WRKY18(1)                                           ----------->HVH21                                         <---------ANAC58       <---------GLK1(1)                 <---------ANAC58      --------->ARR11(3)               ------>NtERF2      <---------ARR11(3)             <---------ANAC58      <---------AGP1                 <---------ANAC58     <---------CCA1(2)              <---------ZAT2                                  <----------DOF2    <------MYB83                    --------->ZAT2                             <----------DOF2    <------MYB46(1)                 --------->ZAT14                    --------->ATHB12  <--------P   --------->TOE2(3)   --------->ALFIN1                    <---------AHL20(2) ==========MYC_MYB--------->YAB1--------->ZAT6                        --------->AHL20(2) ----CBF------>ZmHOX2a(2)      <---------At5g28300 <-----------HVH21  <---------AHL20(2)   aggggttggatctcatacattaataggcccattaacagtgctggcttgacctctgtcacataggcccatctattaattgggcttaacttttatttctatc  30053400                     ------------>CBF                                                 <------NtERF2              <------MYB83                                                           --------->RAP2.6(2)              <------MYB46(1)                                                        ------>NtERF2            <--------P                                                              <---------ATERF1(2)          <---------MYB46(3)                                                        --------->ATERF1(2)          --------->ATHB12                                                          <---------DEAR3(1)          --------->MYB55(2)                        <---------ANAC58               <---------LBD16   --------->At4g35610                              <---------ANAC58               --------->At4g35610   <---------At4g35610      --------->ZAT18  <---------ARR14(2)  <-------TEIL  --------->ARR14(2)   gtttgagcttagtggttgggctattcaatgtcccctatagaatagagtattcttacgtccaaacaggctcgtcttcttcgaaatcggcggcaaaatgcca  30053500                                                                   --------->LBD16                                                                  --------->ANAC46                                                       <-------TEIL------>NtERF2                                                      --------->CCA1(2)                                                     <---------ARR14(2)                                                     --------->ARR14(2)      --------->AtLEC2                                                     --------->ARR11(1) <---------ARR14(2)   <------ZmHOX2a(2)                                                    --------->GLK1(1)<---------ANAC58       <--------                                                    <---------GLK1(1)<---------ANAC58       ---------                                                <---------ANAC46  <---------LBD16    <---------RAP2.6(3)                       <-----------GT1        --------->MYB52(1)  --------->LBD16    <---------SPL7                     <---------GLK1(1)       ----------->HVH21   <---------HSFB2a(2)--------->RAP2.6(2)                     --------->GLK1(1)       <---------ATHB12    <---------LBD16   --------------->AtSPL3               --------->ARR14(2)            ----------->TGA1--------->GLK1(1)   --------->ANAC58  <-               <---------ARR14(2)        ------------>CBF    <---------GLK1(1)   --------->ANAC46 ---             --------->LBD16            --------->TOE2(3)   --------->HSFB2a(1)---------->DOF2    ---           <---------LBD16       ----------->HVH21 ----------->ARR10<------NtERF2--------->ANAC58 <--   tcaaaccctccaaaccggaactgatttcccttactgtgacgacctcaatgacggagatacgagagttcccggcgtttccatacaagccgtactcgatcca  30053600                                            <------NtERF2                                            --------->ATERF1(1)                                           <---------ATERF1(1)                                          <---------ANAC58                                          <---------ANAC58                                         <------NtERF2                                    -----------                                         --------->ATERF1(1)                  <---------AHL20(1)                                        <---------ATERF1(1)                   --------->AHL20(1)               --------->ZAT18         <---------DEAR3(1)                <---------AHL20(2)             --------->ZAT18 <---------------AGL15                 ----------->GT1      <-----------GT1        <---------YAB1       --------->HSFB2a(2)               <---------ALFIN1<---------AHL20(2) -ARR14(2) ------->TEIL      <---------HSFB2a(2)             <<<<<<<<<<<<<<<<<LFY  <---------AHL20(2) >ARR14(2)---------->DOF2    --------------->AGL15           >>>>>>>>>>>>>>>>>LFY<---------AHL20(2) -----ZmHOX2a(2)            <-----------------AGL2          --------->PCF2   <---------AHL20(2) ------>AGP1 <---------ZAT18<-----------------AG          --------->ANAC58 --------->AHL20(2) ------>ARR14(2)            <-----------------AGL1        --------->ANAC58 <---------AHL20(2) -------ARR14(2) <----------DOF2   --------->DAG2       ---------->DOF2  --------->AHL20(2)         <   gatcgatttcatgaatgcgctctatcaatttctcgataagggaggcgtctccatgctcgaaagccccactggtatatatatatatttttttttccacatt  30053700        <-----------GT1                                                                           ---       <---------YAB1                                                                        <-------     <---------ICU4                                                                 --------->ARR11(3)    <---------MYB52(1)                                                              <---------ARR11(3)  ----------->GT1                                         <----------DOF2           --------->GLK1(2) ------>AGL1                                   ------>ZmHOX2a(2)               ----------->GT1   <--- ------ZmHOX2a(2)                            --------->ARR11(3)               ----------->GT1--------   ggatcagttattactcagtagtaagtaagtagactcacttagggtttgatctctctctctctttctctctctcttagggactggaaaatctctaagcatt  30053800  Previous    Next  AGI:  At1g79880.1    Description:  La domain-containing protein. similar to ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1), RNA binding [Arabidopsis thaliana] (TAIR:AT4G32720.1); similar to ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1), RNA binding [Arabidopsis thaliana] (TAIR:AT4G32720.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN66913.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain RNA binding motif (InterPro:IPR014886); contains InterPro domain Lupus La protein; (InterPro:IPR002344); contains InterPro domain Nucleotide-binding, al Range:  from: 30050921    to: 30053271    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g79890.1    Description:  helicase-related. similar to helicase-related [Arabidopsis thaliana] (TAIR:AT1G79950.1); similar to hypothetical protein OsI_018235 [Oryza sativa (indica cultivar-group)] (GB:EAY97002.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73493.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45899.1); contains InterPro domain DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020); contains InterPro domain DEAD2; (InterPro:IPR010614); contains InterPro domain Helicase, ATP-dependent, c2 type; (InterPro:IPR006555); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro domain DNA/R Range:  from: 30053548    to: 30057096    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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