Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    --------->YAB1                                                           ----------->ARR10  --------->TOE2(3)                                                     <---------ARR14(2)  --------->TOE1(3)                                                     --------->ARR14(2) <---------YAB1                    --------->ATHB12               ------>MYB46(1) -------->ARR11(3)                 <---------ICU4                 ------>MYB83            <---------ICU4 ---------ARR11(3)                <---------ATHB12              <---------MYB59          --------->ICU4 ------>ICU4                      <---------YAB1             >>>>>>>>>>WRKY38<---------GLK1(2) ->DEAR3(1)                       --------->ICU4             >>>>>>>>>>WRKY43<---------ARR14(2)    -- ->ANAC46          <---------ICU4<---------TOE2(3)           <---------WRKY18(1)         <---------YAB1 ->DREB2C(2)--------->ANAC58   <---------AHL20(2)            >>>>>>>>>>WRKY26--------->ARR14(2)<----- >MYB46(3)  --------->ANAC58  --------->AHL20(2) --------->YAB1 --------->AtMYB61      --------->YAB1   attatcttaaaaacaagcacatcatgcccagatttaatgatttgaagactaacataatcaacttgaccaaaccagattggattcgcgagtcataatttta  29979800                                                 <---------ATHB12  ------>ZmHOX2a(2)                                                ------>MYB83       ================================HOX2a_HOX2a                                              --------->MYB46(3)  <---------At4g35610                                  --------->AHL20(2)             --------->ARR14(2)                                  <---------AHL20(2)             <---------AGP1       --------->DAG2            --------->AHL20(2)              <---------ARR14(2)      ---------->DOF2         --------->AHL20(2)------>MYB46(1)  <---------ARR11(3) --------->GT1          --------->HSFB2a(2)   <---------MYB46(2)<---------CCA1(2)           ------>ZmHOX2a(1) ------GT1    --------->AHL20(2) <---------AHL20(2)   --------->YAB1                    --------->GLK1(2)   gcagttaataaagctattaaacacttatagaataaaaaaatttgatcaccaaacattcaaaattgtggatctgagtctcttctatgtgagattcctactt  29979900                             --------->ANAC58                             --------->ANAC58                             --------->ANAC46                           <---------DOF5.7(2)                          --------->ARR14(2)                         --------->DOF5.7(2)                       --------->At5g28300                        --------->TOE2(3)                  <---------ARR14(2)                       <---------ANAC55(1)              ------->GAMYB                       <---------ANAC58               -------->P  ----------->GT1                       <---------ANAC55(2)            <---------At5g28300                       <---------ANAC58              <-----------GT1      <---------ZAT14  <---------ANAC46              --------->MYB52(1)   --------->TOE2(3) <--------      --------->ZAT14  --------->ANAC55(2)---------->DOF2  --------->ARR14(2)        <---------ICU4     <---------------AGL15<---------ARR14(2)       <---------MYB52(2)     --------->TOE1(3) ---------   ctctctactatactaggcgaaaattacgtaaacgcatggacgaagaaagtagaactaaccgtatcggagggtaaaaccctaatttcaaaatgactgccct  29980000                                                             <---------ANAC46                                                             <---------DEAR3(1)                                                            --------->ATERF1(1)                                                            <---------LBD16                                                           <---------RAP2.3(1)                                                           ------>NtERF2                                                          <---------DEAR3(1)                                                          <---------RAP2.3(3)                                                          <---------RAP2.3(2)                                                          <---------RRTF1(3)                                                       ----------->HVH21                                                      <-------TEIL                                                     --------->CCA1(2)                                                     --------->ARR14(1)  <---------ZAT14                     <---------CCA1(2)              <---------ARR14(2) --------->ZAT14                  <-------TEIL                      --------->ARR14(2) <---------ZAT14               <---------At4g35610                  --------->ARR11(1) --------->ZAT18               --------->At4g35610                ----------->ARR10  <---------------AtSPL8        <---------At5g28300                    <------NtERF2<------NtERF2--------->ZAT14 -ZAT18--------->MYB52(1)                     ------>NtERF2<---------ATERF1(1)                 ------ >ZAT18<-----------GT1--------->ARR14(2)     <---------DEAR3(1)<------NtERF2             --------->TOE1(2)   tgagagttttaacggtgagcttcatatcgtcggaaaaattgaaatcgacggcgagatacgacggcggagagagtgtacagagagagacagacctaagaaa  29980100                         --------->ANAC58                         --------->ANAC58                       <---------ALFIN1                       ------>NtERF2                      --------->DEAR3(1)                      ----------->HVH21                      --------->ANAC46                     <------NtERF2   <---------At4g35610                     --------->DEAR3(2)--------->WRKY12                    <---------ATERF1(1)----------->HVH21                       <----------DOF2    <--                   --------->PCF5    --------->At4g35610                  ------->GAMYB         -----                  ------>NtERF2    --------->DAG2                      ----------->RAV1(1)     <-----     <---------ATHB12--------->ATERF1(1)       --------->At4g35610  --------->ANAC58   --------->GLK1(1) ---->DOF2   <------ZmHOX2a(2)    ---------->DOF2               *TSS--------->ANAC58   <---------GLK1(1)   agctcaaatcaagagatcgaggccccgacgctagagaaaagctgaccgtagctaaaacagtctctctctctagcaacagagcgttttggatttcaaacgc  29980200                                 <-------TEIL                                --------->ANAC58                                --------->ANAC58                        ------->MYC2                        <-------PIF5                        <-----------HVH21                        <-------MYC2                        ------->PIF5                        ------->MYC3                       --------->bZIP60(2)                       --------->ANAC46                       <---------O2                       --------->TGA1a                       <---------TGA1a              --------->ZAT2                       --------->O2    ------------>CBF                  --------->ANAC58  <---------At4g35610                  --------->ANAC58 ------->TEIL     <---------At4g35610               ------------>CBF<-------MYC2         <---------ZAT2             <-------MYC2      ------->MYC2         ----------->RAV1(2)              <---------YAB1       ------>ZmHOX2a(2)<-------MYC3--------->At4g35610    ------------>CBF          <---------AHL20(2)      <------ZmHOX2a(2)--------->ANAC55(2)          --------->At4g35610             --------->TOE2(3) ----NtERF2  <-------MYC3      <-------MYC3       <-----------RAV1(2)       ---------->DOF2       --- ---->ANAC46 ------->MYC2      ------->MYC3    ------>NtERF2             ------->TEIL--------->AHL20(2) ----LBD16   ------->MYC3----------->HVH21  --------->RAP2.6(3)       --------->AtLEC2 --------->YAB1   ggcaagagatcgccatgtgcaatccacgtgacacatgcatctccaattcggcccagctggtcacaattctacatgcaccaaagaaatattaatagcccag  29980300                                                                                        <---------TOE2(3)                                                                                   --------->YAB1                                                                                   <--------HAHB4                                                                                   <--------ATHB1                                                                                   --------->ATHB51                                                                                   <---------ICU4                                                                                   -------->HAHB4                           --------->AHL20(2)                                     <---------ATHB51                         <----------DOF2                                          --------->ICU4                     ------>NtERF2                                                --------->AHL20(2)                    --------->ANAC58                --------->ANAC46              <---------YAB1                    --------->ANAC58              --------->ZAT6                <---------ICU4                   --------->SPL7     <---------AHL20(1)                        --------->YAB1                  <---------ATERF1(1) --------->AHL20(1)                <---------YAB1<---------AHL20(2)              <---------ZAT18         <---------AHL20(2)          <--------P --------->YAB1           --------->MYB52(2)         --------->AHL20(2)    <---------ARR14(2) --------->ICU4      -- ------->DOF2 --------->ZAT18        --------->AHL20(2)     --------->ARR14(2) <---------YAB1<-------   taaggccctatgttagtgggctacgccctttaaatgacattaaattagactaacacaaaacagttctggttagtatgagtaataataattaagttttgtt  29980400                                                                                        <---------At4g35610                                                                                        <---------STY1(2)                           --------->GLK1(1)                               <------ZmHOX2a(1)    -----                          <---------ARR14(2)                          --------->WRKY18(1)    --------                          --------->ARR14(2)                         ================================                          --------->ARR11(3)                         <-------GAMYB --------->ANAC46                         <------ZmHOX2a(1)                          <---------DEAR3(2)  --------->At4g35610           --------->ANAC58--------->CCA1(2)                       <---------DREB2C(2)  --------->ZAT2           --------->ANAC58<---------GLK1(1)                       <---------At1g77200  <---------ZAT2          --------->WOX13(1)                 <---------ATHB12     --------->DDF1   --------->ANAC58-- <---------MYB52(1)    <---------TOE1(3) <---------AHL20(2)     <-----------RAV1(1)--------->ANAC58<- ------->ETT(1)        <---------TOE2(3) --------->AHL20(2)<---------ANAC55(2)   ---------->DOF2<---- ----RAV1(1)<---------ATHB12    <----------DOF2            --------->ANAC55(2)   ====================   gtcggtatttagcaatcaattttctaaggatatactttgacatttaaatcaatagagagtcatgtaatgtcggtcgaggacttaaaagccagctagaata  29980500         ===========================bZIP_DOF                                     --------->ANAC55(2)         <---------TGA1a                                                         --------->ANAC55(1)         ===========================bZIP_DOF                                     <---------ANAC55(2)         <---------O2                                                            --------->ANAC46         --------->O2                                                            --------->ANAC58         --------->TGA1a                                                         --------->ANAC58     ==============MYC_MYB                                                     <---------ALFIN1     ------->GAMYB                                                            <---------REM1(2)    --------->ANAC46                                                         ------>MYB46(1)   -------->P                                                                ------>MYB83   ================MYC_MYB                                                  --------->ANAC46  =================MYC_MYB                                                 --------->MYB46(3)  ------->GAMYB                                                            ------->GAMYB --------->MYB46(3)                                                       --------->ANAC46 ---->YAB1<-------MYC3                                                   -------->P ->YAB1<---------ALFIN1          --------->ANAC58                        ------>MYB83  <---------AHL20(1) ==================MYC_MYB   <-----------HVH21                           ------>MYB46(1)<---------AHL20(2) ------->YAB1----------->HVH21   --------->ANAC58                      --------->MYB46(3) ----------GT1      --------->YAB1  ---------->DOF2                    --------->AtMYB61--------->AHL20(2) -----ICU4------->MYC3   ---------->DOF2                          <---------HSFB2a(2)  <---------AHL20(2) ==================bZIP_DOF--------->DAG2        ----------->GT1  --------->HSFB2a(2)  --------->AHL20(2)   ataacaaccccacatgggacatttataaaaaggtcacacaaagtaagtaagtggaaaataactcaattccagaccaacccaacacgcaatttaattctct  29980600                                                                                         ------>ZmHOX2a(2)                        <---------MYB52(1)                                              --------->CCA1(2)                       --------->LBD16                  --------->ARR14(2)              <------ZmHOX2a(2)                     <---------LBD16               --------->LBD16                     <---------ARR11(3)                   --------->ARR14(2)             --------->ATERF1(2)                  --------->AGP1                   <---------ARR14(2)             <---------ATERF1(2)                  --------->ARR11(3)                   --------->ARR11(3)            <---------LBD16                       <---------ARR14(2)                  <---------GLK1(1)           --------->WRKY38(1) <-----------GT1      --------->ARR14(2)                  --------->RVE1(1)           --------->WRKY12   --------->ZAT14     <XXXXXXXXXXXXXXX              ------>ZmHOX2a(1)           --------->LBD16       <----------DOF2<------NtERF2       <-             --------->TOE2(3)          <---------LBD16 <---------ARR14(2)    --------->LBD16   <---- <---------ATHB12 --------->CCA1(1)  <---------GLK1(1)  --------->GLK1(2)   <---------LBD16----------   ctaatcaatttagttcctaaatatccggtttttgagaagaaacccgcgtttaccggcgaatcggctctttactctctagccggagacgagatctacaatt  29980700  Previous    Next  AGI:  At1g79650.1    Description:  RAD23; damaged DNA binding. Identical to Putative DNA repair protein RAD23-1 (RAD23-1) [Arabidopsis Thaliana] (GB:Q84L33;GB:Q84L34;GB:Q8LA46;GB:Q94CE9;GB:Q9MA10); similar to DNA repair protein RAD23, putative [Arabidopsis thaliana] (TAIR:AT1G16190.1); similar to Rad23-3Ai [synthetic construct] (GB:ABG89119.1); contains InterPro domain Heat shock chaperonin-binding (InterPro:IPR006636); contains InterPro domain UV excision repair protein Rad23; (InterPro:IPR004806); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); contains InterPro domain Ubiquitin; (InterPro:IPR0006 Range:  from: 29977001    to: 29980164    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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