Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         <---------AHL20(2)                                                                      --------->AHL20(2)                                                                     <---------YAB1                                                                   <---------AHL20(2)             ----------->RAV1(2)                           <---------ANAC46             <---------O2                        <-----------GT1  --------->ICU4              ------- ------>GT1  --------->ZAT2         ----------->GT1        <---------LBD16                    <------ -----At4g35610        <---------AHL20(2) <---------AHL20(2)      --------->AHL20(2)   --------->YAB1 ---->At4g35610       --------->AHL20(2)  --------->AHL20(2)  <---------MYB52(1)      <---------YAB1 -----RAV1(2)--------->At4g35610   ----------->GT1        <---------LBD16          <---------AHL20(2)   gtgaattactgaatcacctggctattttataacaaggagggaaattaaatactaccatttttcgggtatttattatataaaacattttatgaaaatttat  29950800                                                                                                 <---                                                                                                 ----                                                                                                <----                                                                                               <-----                                                                                             <------MYB83                                                                                             <------MYB46(1)                                                                                            ---------                                                                                            ---------                               --------->AHL20(2)                                           ---------                               --------->AHL20(1)                                       --------->DAG2                               <---------AHL20(2)                                      --------->DAG2                              <---------AHL20(2)                                      ---------->DOF2      <---------ATHB12    --------->AHL20(2)                    <-----------------------TaNAC69(2) <---------------------WRI1   --------->AHL20(2)      <---------WOX13(1)  <------ZmHOX2a(1) --------- -->AHL20(2)              <---------AHL20(2)<---------YAB1  <XXXXXXXXXXXXXXXXXXXXMIR2111B* <---------MYB55(1) ---AHL20(2)       --------->GLK1(1)     <---------ZAT6----------->GT1  <---------TOE2(3)  <--------P   attagccaaacaatctaagagatttcatttaaattaattacaagtgttcattgttgatggataaattgcatattgaggatgaataccaaaaaggtaggta  29950900                           ------>NtERF2                          --------->DEAR3(1)                          <---------ANAC46                       --------->ANAC58                       <---------DEAR3(1)                       --------->ANAC46                       --------->ANAC58 ------At4g35610     <---------AtLEC2 ----->At4g35610    <---------ZAT18 ---TEIL            <---------ZAT14 ---P               --------->ZAT18                                   <----------DOF2           <---- >MYB59             --------->ZAT14 <---------YAB1                  --------------->AGL15     <------ >MYB111(2)   <---------ATHB12<---------DEAR3(2)          ---------->DOF2               --------->AHL20(2) >MYB46(2)   ------>MYB46(1)<------NtERF2     <---------AHL20(2)  <-----------GT1       <---------AHL20(2) >MYB111(1)  ------>MYB83 <---------DEAR3(1) --------->AHL20(2)  <-----------GT1       --------->AHL20(2)   gatgccaactagaccaatcttgtgcacggcgtcgtttcatgagtatattaaatgggccttaaaagtattaccctttttatgacgacccatttaatttagg  29951000                                                                            --------->At4g35610                                                                       <---------bZIP60(1)                                                                       <---------TGA2(1)                                                                       --------->bZIP60(1)         <-                                                            <---------AHL20(2)             --------->AHL20(2)                                                           --------->AHL20(2)              <---------                        --------->ATHB51                   --------->AHL20(1)      ------->GAMYB   --                       <---------YAB1                      <---------AHL20(1)      --------->TOE1(3)                     --------->YAB1                     --------->AHL20(2)  <---------At4g35610<-----   ---------->DOF2   <--------HAHB4               ------->TEIL      <---------MYB52(1)   <----------DOF2 --ZmHOX2a(1)       <---------YAB1          <----------DOF2<---------AHL20(2)      --------->TOE2(3) ---TOE2(3)   <-----------GT1            <-----------GT1--------->ATHB51<-----------HVH21<---------DAG2   aagcccaaagatgaataaacctattattattgtttatgtgtttatacttttgaacccataatttatttctgttatgtcatctcaaccctaactttatata  29951100                               <------NtERF2<------ZmHOX2a(1)                              <-----------HVH21                              <---------RAP2.6(3)                             >>>>>>>>>AtERF-3                             --------->RAP2.3(2)                             --------->RAP2.3(3)                             --------->GLK1(2)            --------->LBD16  >>>>>>>>>AtERF-4                              <---------AHL20(2)     <--     --------->AHL20(2)      --------->RAP2.6(2)                     ----------->GT1              --- --------ICU4               --------->RAP2.3(1)                   <---------At4g35610             --- --TBP<---------AHL20(2) ------->GAMYB   --------->CCA1(2)        --------->At4g35610             <-- ------->YAB1    --------->At4g35610---------->DOF2               <---------ZAT2                 <--- ----AHL20(2)--------->ANAC46--------->DEAR3(1)                   --------->ZAT2         *TSS    ----   atcagtattaaatccaggcatcttcaacgagccgtcaacaaagataggaaaacgtagtcgtttgatacagctggtataaaatctgaattcattcttcaaa  29951200                                <---------ANAC58                            <---------ANAC58                            <---------ANAC58                            <-------GAMYB                           --------->MYB52(2)                           <------MYB83              <---------DEAR3(1)<---------ANAC55(2)             <---------MYB52(1) <---------ANAC46        <---------ICU4      <-----------ARR10    <------MYB46(1)             <---------YAB1      --------->ARR11(3)   --------->MYB55(2)          --------->ICU4      <---------ARR11(3)   <---------MYB46(3)        <---------ICU4   <---------AHL20(2)     <---------AtMYB61          --------->YAB1   --------->AHL20(2)  <-----------RAV1(1)           <--------HAHB4  --------->AHL20(2)   <---------MYB46(3)           --------->ICU4<---------ANAC58                 -- -------AHL20(1)    <---------MYB46(3)  <---------GLK1(2)     <---------ANAC58            <---------ANAC58 ------>AHL20(2)  <-------GAMYB <---------ANAC58    <---------YAB1<---------ANAC58        <---------ANAC58 ------>AHL20(1) <---------ANAC58       --------->ARR11(3)    <---------ANAC58          ------>ZmHOX2a(2) -------AHL20(2) <---------ANAC58       <---------ARR14(2)  <-----------GT1   <---------At4g35610---- ------AHL20(2)  <---------ANAC46       --------->ARR14(2)<---------YAB1      --------->At4g35610<--- ----->AHL20(2) <------NtERF2   --------->ANAC55(2) <---------ATHB12   ---------->DOF2 <------ZmHOX2a(2)   taaattaaaatcttcgttggcgttgttgttggttgcgttacagattttggactaatcattattttcgtgcctgcaaagtcagcacgacgatcgcgtttcg  29951300                            --------->YAB1                      ----------->RAV1(1)                    ------>NtERF2                    --------->LBD16                   --------->ANAC46                   --------->ANAC58          --------->ARR14(2)              ----------->ARR10              <---------ARR14(2)   ---------->DOF2 --------->ANAC58      <-------TEIL          <----------DOF2             --------->MYB59 ---->ZmHOX2a(2)  --------->MYB46(3)   --------->At5g28300     <---------DAG2     ----------->GT1 ----->ARR11(3) <---------ARR14(2)   <---------DEAR3(1)   <--------P              --------->AtLEC2 ------ARR11(3) --------->ARR14(2)  <---------LBD16 ---------->DOF2       <----------DOF2  <---------TOE2(3)   atcttcaaagtagaagaagacccgccacaatcacaaatcgcggtgcatatagtctaaagggtaagcttttcgattcctttcaccatgtaaatttaggtca  29951400                                        --------->ARR11(3)                                        <---------ARR11(3)                                   --------->LBD16                                   ------>NtERF2                                  <---------ANAC58                                  <---------ANAC46                                        --------->ARR14(2)             --------->ATHB12     <---------ANAC58                                        <---------ARR14(2)          <----------DOF2      ------>ZmHOX2a(1)                                          <---------GLK1(2)       <----------DOF2        <---------LBD16                                             --------->ARR11(3)   <---------MYB52(1)        ----------->RAV1(2)               <---------YAB1             <---------ARR11(3)  <-----------HVH21        <-----------GT1                  --------->ICU4 <---------ATHB51  --------->LBD16   <---------ANAC58--------->ANAC58   <---------LBD16     <---------AHL20(2) <---------ANAC58   <---------ANAC58--------->ANAC58 <-----------GT1   <---------YAB1   <---------TOE2(2) <---------ANAC58   <---------ANAC46<------NtERF2<---------GLK1(2)------->TEIL          <---------TOE1(2)   attccgtcgcttctttgatttggggtgtttttcctggcgcgaaatctttccgattttccctgattatgaatttataaataatgggtatcgcagattttgg  29951500                                                 <---------AHL20(2)                                         ------>NtERF2                                        --------->DEAR3(1)          --------->ZAT14                                        --------->RAP2.3(3)         ---------->DOF2                                        --------->RAP2.3(2)   --------->MYB52(1)                                       --------->RAP2.3(1)    ----------->RAV1(1)                                       --------->ORA47(2)  --------->ANAC58              <----------DOF2         --------->LBD16      --------->ANAC46           ----------->RAV1(2)          <---------GLK1(2)           ------>NtERF2        --------->ANAC58         <---------ALFIN1       <---------ANAC46         <---------At4g35610       <---------LBD16        <-----------GT1     <---------MYB46(3)         --------->At4g35610   <-----------GT1       <---------AHL20(2) <-----   gtctcagtggctgattcttttcgactctagtttctgcttccgccgtctcatttttttttctacgcaacagtaaagtttttatttttccacctgaattttc  29951600                                        <-----------GT1            --------->ARR11(3)        <---------ICU4            <---------GLK1(2)      ------>MYB46(1)            <---------ARR14(2)     ------>MYB83            <---------ARR14(3)   --------->TOE2(3)            --------->ARR14(3)   <---------MYB59            <---------ARR11(3)  <---------ANAC55(2)                       <---------YAB1        <------NtERF2           --------->ANAC55(2)       <---------AHL20(2) --------->ATHB12        <---------At4g35610 <---------At4g35610         <-----------GT1  <---------YAB1 ----LBD16----------->ARR10<---------YAB1    --------->At4g35610<---------At5g28300     <---------CCA1(2)   ggatgatggccgaagattttgtgtctatgctgatacctaatttttccatctgaaattgattttattcactgctattttcattttgttttcatatcattgt  29951700  Previous    Next  AGI:  At1g79590.1    Description:  SYP52 (SYNTAXIN OF PLANTS 52). Identical to Syntaxin-52 (SYP52) [Arabidopsis Thaliana] (GB:Q94KK7;GB:Q9MA16); similar to SYP51 (SYNTAXIN OF PLANTS 51) [Arabidopsis thaliana] (TAIR:AT1G16240.1); similar to SYP51 (SYNTAXIN OF PLANTS 51) [Arabidopsis thaliana] (TAIR:AT1G16240.2); similar to unknown [Picea sitchensis] (GB:ABK23110.1); similar to Os08g0277900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061436.1); contains InterPro domain Target SNARE coiled-coil region (InterPro:IPR000727); contains InterPro domain Syntaxin/epimorphin, conserved site; (InterPro:IPR006012) Range:  from: 29951189    to: 29953458    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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