Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <------MYB83        --------->MYB52(1)                                                <------MYB46(1)  --------->ANAC46                   -                                               <---------MYB46(3)--------->ANAC58                   -                                              <--------P         --------->ANAC58         --------->At4g35610                                         <------ZmHOX2a(1) <---------MYB46(3)             <---------At4g35610      <----------DOF2                 <-----------RAV1(2) <---------AtMYB61          <---------GLK1(2)     <---------DAG2               <---------ZAT18         --------->ALFIN1      ----------->RAV1(1) <    <------NtERF2  ---------->DOF2--------->ZAT18       <---------ANAC58   ------>ZmHOX2a(2)        < -----MYB52(1)   --------->At4g35610 <------NtERF2      <---------ANAC58  <------ZmHOX2a(2)        -- --GAMYB         <---------At4g35610----------->RAV1(1) <---------ANAC46 <---------ARR14(2)        <-   tgagtcgccttttgaagtcagcaaagtcgtcttgagggcaccaggagagttggtgatggagtggttcaagaaaccgatcgtgcaacagtttcttctgaac  29907900                                                                       --------->AGP1                                                                 --------->ZAT2                                                                 --------->At4g35610                                                                 <---------At4g35610                                                                 <---------ZAT2                                                              =================HOX2a_HOX2a                                                              ==================HOX2a_HOX2a                                                              ------>ZmHOX2a(1)     ------>MYB83                                                              --------->LBD16       ------>MYB46(1)                                                            ----------->RAV1(2)   --------->DEAR3(1)                                                            <---------At4g35610  <---------At4g35610     <-----------HVH21                                      --------->At4g35610  --------->At4g35610  ------>ZmHOX2a(2)                                        ------>NtERF2<------ZmHOX2a(2) <------ZmHOX2a(2)                                       <---------At4g35610   <-----------GT1 -------->ARR14(2)                                      <---------ATERF1(1)  <-----------HVH21 -------->ARR11(3)                                     <---------DEAR3(1)------>ZmHOX2a(2) ---------ARR14(2)                                  --------->ZAT2     --------->ARR11(3)         <-- ---------ARR11(3)--------->AHL20(1)                <---------ZAT2     <---------ARR11(3)     <------ ------->GLK1(1)  <---------AHL20(1)               --------->ANAC58    <---------AGP1     --------->MYB46(3) --------GLK1(1)  --------->ARR11(3) ------->TEIL  --------->ANAC58   <---------CCA1(2) --------->ANAC46   gagatcccatcacggtctgatatattgatgcataagatgaacgtgatgttcccaagctcggctcctgagcttagatctatgtcacctcccaaaccactca  29908000                                                                    ------>ZmHOX2a(2)                                                                   <------ZmHOX2a(2)                                                                   <---------GLK1(1)                                                                   --------->GLK1(1)                                                                  --------->AGP1   <---------ANAC58                                                                  <---------ARR14(2)                                                                  --------->ARR14(2)             <---                                                                  --------->ARR11(3)             <---                                                                  <---------ARR11(3)            -----                                                    <---------ARR14(2)      --------->TOE2(3)   <----                                                    --------->ARR14(2)     ----------->GT1      <----     ---------->DOF2                               <------NtERF2  <---------AGP1   <---------ANAC58 ---------HVH21             ---------->DOF2      <---------ANAC46<---------At4g35610            ----- ---ATHB12    ----------->HVH21                 <---------LBD16  <---------CCA1(2) <---------ANAC55(2)   tgtcatcgaaagcgttctaacaggggagacaaaagtcatgggtttttgtaggcgggttctctgtttcagatctctcattgttaatacttgtctgaaaata  29908100                          --------->YAB1          <---------ICU4  <---------ICU4        --------->ARR11(3)--------->ATHB12        <---------ARR11(3)-------->ATHB1                                                    ------>ZmHOX2a(1)       --------->YAB1    <---------ATHB12                <----------DOF2                    --------- ------YAB1  <-----------GT1                         <---------ANAC58            --------->ANAC55(2) ------AHL20(2)      --------->AHL20(2)              <---------ANAC46            <---------ANAC58 ---->AHL20(2)     <----------DOF2                   <---------ANAC55(1)         <---------ANAC58 -----AHL20(1) <---------ANAC58  --------->MYB52(2)  <---------ANAC58--------->LBD16  ------>ZmHOX2a(1) -----AHL20(2) --------->ANAC55(2)                   <---------ANAC55(2)        --------->SPL7     <- ---->AHL20(1) <---------ANAC58<---------MYB52(1)    --------->ANAC55(2) ---------->DOF2   <---------LBD16   taatggaaatgatatttacgtctttaaatcattgttagttcatttttgttcgattacgtctttaatgtctccgagtaaagcttacgtccttatcctggat  29908200                        <---------TOE2(2)                                                           -                        <---------TOE1(2)                                                           -                       ------>ZmHOX2a(1)                                                            -              --------->LBD16                                                                       -             <---------ANAC46       ------>ZmHOX2a(1)                                           <----             --------->LBD16        --------->LBD16                 <---------ICU4        -----------   <---------AHL20(2) --------->TOE2(2)        <---------AHL20(2)   --------->YAB1    <---------ARR11(3) >LBD16  <-----------HVH21         <---------LBD16                 <---------ATHB12   --------->ARR11(3) -----ZmHOX2a(1)      --------->TOE1(2)    <------ZmHOX2a(1) ------->TEIL            --------->RVE1(1)   aggaattaatctgtcccgagtattcctacgttcttatcctggataggaattaatctgtccatgtatccaaacatcacctctcagttaatatctccaattt  29908300                       --------->ARR11(3)                       <---------ARR14(3)                                             ------>ZmHOX2a(1)     --------->ANAC58  <---------ARR11(3)                       --------->ARR11(3)   --------->TOE2(3)     --------->ANAC58  --------->ARR14(3)                       <---------ARR11(3)   --------->TOE1(3)    ------>NtERF2      --------->ARR14(2)                    <---------HSFB2a(2) <---------GLK1(2) ---------->HVH21     --------->GLK1(1)              <---------At4g35610        --------->At4g35610 -------->ANAC58      <---------GLK1(1)           <---------At4g35610       <-----------HVH21 -------->ANAC58    <------ZmHOX2a(1)  --------->ZAT14       --------->HSFB2a(2)<---------At4g35610 -------->ANAC46   *TSS<---------ARR14(2)         --------->At4g35610   ---------->DOF2     <-------- -------GT1--------->DAG2------>ZmHOX2a(2)        --------->ZAT14<------ZmHOX2a(2)--------->GLK1(2) ->CBF   ---------->DOF2<------ZmHOX2a(2)         <---------ZAT14============================HOX2a_HOX2a   acacgacgcgctaaaggtgagaggagatctcacttgccttcttcactcactctgcagcaacttcgagatcaagttaaaggtcagattccttaattctcca  29908400                                                --------->GLK1(2)                                               <---------ARR14(2)                                        <------ZmHOX2a(2)                                       --------->ARR14(2)                                          <-                                       <---------ARR14(2)                                         <--                                       <---------ARR11(3)                                         ---                                       --------->ARR11(3)                                         <--                                       <-----------ARR10                                          ---                                     --------->LBD16 <---------GLK1(2)                           <---                                    <---------HSFB2a(2)                         <---------ANAC58 <---                                    --------->HSFB2a(2)  <---------YAB1         <---------ANAC58 <---                                   <---------LBD16 <---------YAB1         --------->ATHB12       <---                             <------MYB46(1)   <---------GLK1(2)         <---------YAB1          ----           --------->MYB52(2)<------MYB83------>ZmHOX2a(2)               <---------ATHB51   <--------        <---------ANAC58    --------->MYB59<---------LBD16               --------->ICU4  --------->YAB1 ---GT1 <---------ANAC58    <---------TOE2(3)  --------->ARR14(2)<----------DOF2<---------ANAC46-----   tttcttatttgcttcgttgcagagaagaattaggttttcccgatcttcggattctgattctgattttcttttgcgattattggcttggcgataagaatgg  29908500   --------->REM1(1)   --------->bZIP60(2) ----------->RAV1(1) -----NtERF2 -------ATERF1(1) --->NtERF2 -------RAP2.3(1) ------>RAP2.6(2) ------ANAC46 ------DEAR3(1) ------ATERF1(2)                                                                --------->At5g28300 ------RAP2.6(2)                           <---------DAG2              <---------ANAC58 ----->ATERF1(2)      <---------At4g35610  <----------DOF2             <---------ANAC58 -ICU4  <---------YAB1--------->ZAT2      <---------DAG2<---------GLK1(2)      ----------->GT1 ---->RAP2.6(3)       --------->At4g35610 <----------DOF2        <-----------RAV1(1)               <-   cggcaacatcactattgtacaatcagctcaaggtttgagtctcgcctttttgttttcagaatgttgaatgttggcttcttacggtaaaatcgagtttgat  29908600                <---------ARR14(2)                --------->ARR14(2)           <---------ANAC58           <---------ANAC46                    <------MYB46(1)           <---------ANAC58                    <------MYB83 <---------WOX13(1)   --------------->AGL15        <---------CCA1(2)                     <---------MYB46(3)    --------->LBD16       ------->TEIL                          <---------ANAC58       <---------LBD16    <---------ANAC46   --------->ZAT2        <---------ANAC58      <---------TOE1(1)    --------->ANAC55(2)<---------ZAT2  <-----------RAV1(1)--------->ATHB12   <---------GLK1(2)    <---------ANAC55(1)--------->At4g35610 --------->MYB55(2)   --------->ARR14(2)    <---------ANAC55(2)<---------At4g35610 <---------MYB46(3)   <---------ARR14(2) --------YAB1<---------ANAC46      <---------YAB1        <---------YAB1<------ZmHOX2a(1)   ----------   tctaatacgtatatcgtgtataggctgctgaaccattcttcttgttggctggtccaaatgtgattgaatccgaggaacatattcttcgaatggcaaagca  29908700                                                               <---------YAB1                                                             <---------AtLEC2                                                       <------ZmHOX2a(2)                                                      <---------ARR11(3)                                                      --------->AGP1                           <---------ANAC46           --------->ARR11(3)                      --------->ATHB12               --------->GLK1(1)     --------->ARR11(3)    <---------ANAC58          <---------GLK1(1)                       --------     <---------ARR11(3)    <---------ANAC58   ----------->RAV1(2) ------->TEIL------>ZmHOX2a(2) ---------->DOF2     <---------YAB1      <-----------GT1 <----------DOF2    <---------ARR11(3) >DOF2         ---------->DOF2        <---------MYB52(1)------>ZmHOX2a(2)   --------->ARR11(3)   cattaaagacatttccacaaagtatgatttcttgtactccgtttttccccctgagagatctttgtatgaatgtgtattgatctctatatgaaaattgatt  29908800  Previous    Next  AGI:  At1g79490.1    Description:  EMB2217 (EMBRYO DEFECTIVE 2217). similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G18900.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G18900.2); similar to hypothetical protein OsJ_015442 [Oryza sativa (japonica cultivar-group)] (GB:EAZ31959.1); similar to hypothetical protein OsI_016751 [Oryza sativa (indica cultivar-group)] (GB:EAY95518.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70015.1); contains InterPro domain Smr protein/MutS2 C-terminal (InterPro:IPR002625); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR0 Range:  from: 29905349    to: 29908082    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g79500.1    Description:  AtkdsA1 (Arabidopsis thaliana KDO-8-phosphate synthase A1); 3-deoxy-8-phosphooctulonate synthase. Identical to 2-dehydro-3-deoxyphosphooctonate aldolase (KDSA) [Arabidopsis Thaliana] (GB:Q9AV97;GB:Q8L890;GB:Q9SAJ9); similar to ATKDSA2/ATKSDA [Arabidopsis thaliana] (TAIR:AT1G16340.3); similar to ATKDSA2/ATKSDA, 3-deoxy-8-phosphooctulonate synthase [Arabidopsis thaliana] (TAIR:AT1G16340.1); similar to ATKDSA2/ATKSDA, 3-deoxy-8-phosphooctulonate synthase [Arabidopsis thaliana] (TAIR:AT1G16340.2); similar to unknown [Populus trichocarpa] (GB:ABK93946.1); contains InterPro domain DAHP synthetase I/KDSA; (InterPro:IPR006218); contains InterPro dom Range:  from: 29908319    to: 29911452    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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