Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              --------->ANAC46                                           ------->MYC2                                           <-------MYC2                                           <-------MYC3                                           ------->MYC3                                          --------->ANAC58                               --------->DEAR3(1)                            ------->GAMYB --------->ANAC46                            --------->DEAR3(1)                           --------->DEAR3(2)   <---------At4g35610        <---------bZIP60(1)<------------AtMYB77 --------->At4g35610        --------->bZIP60(1)<---------MYB55(2)   --------->ZAT2     ----------->TGA1      --------->MYB46(3)   <---------ZAT2     ----------->HVH21  --------->MYB46(3)--------->ANAC58 -----MYB83          <---------ETT(2)   <---------ALFIN1            <---------ALFIN1 -----MYB46(1)    <----------DOF2<---------MYB52(1)<---------At4g35610                     ---------- -->ALFIN1      --------->At4g35610    <---------REM1(2)------>ZmHOX2a(1) --------->HSFB2a(2) -------   gaggtatgtgacgagatgagctttcgacaaccgccgatggctacacgcgctgctgctcctattaccatcaccacttcccaaacttcaatcgaacaaagat  29892200                                                                           ----------->GT1                                                                           --------->ANAC46                                                                  <---------RVE1(1)                                                     <-----------RAV1(1)   --------->ANAC58       <--                                            ------->GAMYB         <---------CCA1(1)--------->ARR14(2)                               <---------HSFC1(2)<---------AHL20(2)        --------->ANAC58      <---                         --------->REM1(2) --------->ANAC58      <---------ARR11(3)--------->ARR11(3)                    --------->At4g35610    --------->ANAC58      <---------GLK1(2)--------->CCA1(1)   --------->ZAT6   --------->ZAT2       --------->MYB52(1)      --------->ARR11(3)<---------ARR11(3) >DOF2             --------->GLK1(2)  --------->ANAC46          <---------RVE1(1) --------->RVE1(1)-- -->YAB1      <------ZmHOX2a(2)--------->HSFC1(2)--------->AHL20(2)    <-----------GT1           ----   gacgaacactagtgagatcagaagctgtgaagaagctactaggcaacgaaattatatgttgtcaagagattttttacaagtaaaatatcttcaaaattgg  29892300                                                                      ----------->HVH21                                                                     <-------MYC3                                                                     ------->MYC3                                                         --------->O2<-------MYC2                                                         =====================bZIP_bZIP                                                         <---------bZIP60(2)                                                         =================================MYC_MYB                                                         <---------O2<-------PIF5                                                         <---------ANAC58                                                         <---------ANAC46                                                         <---------ANAC58                                                    <---------ICU4   ------->MYC4                   <-------GAMYB                    --------->YAB1   ------->MYC2                   ================================================MYC_MYB              =============MYC_MYB                <---------YAB1     <-------MYC4              <---------ZAT2                    <---------AHL20(2)   ------->PIF5              --------->ZAT2                    -------->ATHB1      <---------PIF3(3)              =============MYC_MYB              -------->HAHB4      <---------O2              --------->O2                      <--------HAHB4      --------->PIF3(3)              <---------TGA1a                   <---------ICU4      --------->O2              --------->TGA1a                   --------->ATHB51    --------->ANAC46              <---------O2                      --------->YAB1      >>>>>>>>>>HY5            <-----------RAV1(2)                <---------YAB1       <---------TGA1a       --------->YAB1                          --------->ICU4       --------->TGA1a         ------>NtERF2       <---------ICU4                          <---------ATHB51     ======================MYC_MYB     *TSS----------->HVH21                =========================MYC_MYB                  --------- <-----------HVH21<------MYB83            <-------GAMYB  <---------ANAC55(1)               --------->LBD16 --------->LBD16  ----------->GT1         ====================================MYC_MYB      <---------ANAC46 ----ZmHOX2a(2)   <------MYB46(1)        ----------->GT1 <---------TGA1a          ------->GAMYB ------ARR14(2)  <---------MYB46(3)      <------MYB83 ----------->TGA1--------->ALFIN1    <---------LBD16 ---->ZmHOX2a(2)--------->ALFIN1       --------->ALFIN1  <---------ANAC55(2)    <---------At5g28300 ----->ARR14(2) <--------P<-----------GT1<------MYB46(1)----------->STF1       <-----------GT1   <---   atccgtcaaaaatgacaggtgggttatttgactgtattcgagtgggttaattattaatgacgtgtaatccacgtggcagtttaaccgcatttgccgggtt  29892400                                                                           <---------AHL20(2)                                                                           --------->AHL20(2)                                                                        <---------AHL20(2)                                                                    <---------ICU4                                                                    --------->YAB1                                                                   <---------YAB1                                                                   --------->ICU4           ---------                       <----------DOF2                         <---------ANAC58            <---------YAB1             <---------MYB52(1)                                <---------ANAC58   <-----------GT1           <---------ANAC58                                    <---------ANAC46  <-----------GT1 >LBD16    <---------ANAC58                         --------->TOE2(3) <---------YAB1      <---------TOE1(2) ------MYB46(3)  <---------AHL20(2)    <----------DOF2 --------->AHL20(2)  <---------AHL20(1)     ---   tgttcgaaaacttccgttttttattctttacccaaattgccctttaaaaaataacataaaaattggcttattattattttatttttccctcccatgataa  29892500                                                                                     *TSS                                                                                    --------->CCA1(2)                                                                    --------->ARR11(3)                                                              ------>ZmHOX2a(2)    --------->ARR11(3)                                                             <------ZmHOX2a(2)     --------->ARR14(2)                               --------->REM1(2)            --------->ARR11(3)     <---------ARR11(3)                            <---------ANAC58                <---------ARR11(3)     <---------ARR14(2)                            <---------ANAC58               --------->RVE1(1)     ----------->ARR10                     <----------DOF2        <---------ANAC58<---------AGP1 --------->LBD16 --------->YAB1 >YAB1  ---------->DOF2  <-----------GT1    <---------ANAC58--------->AGP1--------->HSFB2a(2) ---->GAMYB      <----------DOF2 --------->ETT(2)       ---------->DOF2   <---------HSFB2a(2)     <--   cagcatttgtcaaagtcgtctttcttttttccttgtcgagagttttgcttcttcatctaaaagatctatacatcttccccaagtagatatgtttcataag  29892600                                 ------>ZmHOX2a(2)                                <------ZmHOX2a(2)                               --------->ARR11(3)                               <---------ARR14(2)                               <---------ARR11(3)                               --------->GLK1(2)                               <-----------ARR10                               --------->ARR14(2)                               <---------AGP1                              <------ZmHOX2a(1)            <---------RAP2.6(3)                            <---------TOE2(2)              --------->ORA47(1)     ------>MYB83           <---------TOE1(2)              ------>NtERF2     ------>MYB46(1)     <---------ANAC58                 <---------ANAC46                   --------   <---------MYB59       <---------ANAC46                 <---------ANAC58               <------ZmHOX2a(1) -------MYB59            <---------ANAC58                 <---------ANAC58        <---------REM1(1)   cctaacctaacattcttcccctcattcgcgtaggatctgttcttcccaaaacgactcatgccgtccattcgattcggaatatagttgtagaggagatttc  29892700                                                               ------>ZmHOX2a(2)                                                              <------ZmHOX2a(2)                                                       <---------DEAR3(1)                                                       --------->ALFIN1                                      <---------At4g35610    --------->ARR14(2)                                      --------->At4g35610    <---------ARR14(2)                                      --------->HSFB2a(1)--------->ATERF1(1)                                      <---------HSFB2a(1)<------NtERF2                                   <------NtERF2      ===============HOX2a_HOX2a                                  ------>NtERF2       <------ZmHOX2a(1)                                <---------LBD16       --------->ATERF1(1)                                --------->LBD16<-----------HVH21             --------->LBD16                               --------->DEAR3(1)     ================HOX2a_HOX2a                             <---------At5g28300   <------NtERF2        <---------GLK1(1)       -----               <---------DEAR3(1)--------->ANAC46<---------DEAR3(1)     --------->GLK1(1)       -----     <---------ATHB12   --------->GLK1(1)  <---------ALFIN1 <------NtERF2  <---------LBD16      ----- ->GLK1(1)<---------ARR11(3)<---------ALFIN1  --------->DEAR3(1) ----------->RAV1(2)          -------   atttctaatcaatttcttcggtgatgagttccaccgcggcatcttccaccgtcggaggaggcggatcgtctgagatttccggtgtcaaaaaaacctccaa  29892800                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                        <---------HSFB2a(1)                                                                                        --------->HSFB2a(1)                                                                                        <---------HSFC1(2)           <---------ARR11(3)                     <------MYB46(1)                       --------->HSFC1(2)  --------->AtMYB61  --------->ZAT6              --------->MYB59                  ------>ZmHOX2a(1) ---->ANAC58  <----------DOF2                    <---------AtMYB61           ------>ZmHOX2a(2) ---->ANAC58 ------>ZmHOX2a(2)              <---------YAB1<----------DOF2  --------->ARR14(2)      <- ---->ANAC46 ===========================HOX2a_HOX2a       <---------DAG2   <---------ARR14(2) ------- --->DOF2  --------->ARR11(3)    ------>ZmHOX2a(1)<------MYB83   --------->ZAT14 --------------------   gcgaccaaaatgtgatctttctatctctatctatccttctaatcttctgatttggtcgaactttttgtatagtcatggatcgtccttagaaatttcgtct  29892900                ------>ZmHOX2a(1)                --------->HSFB2a(2)    <-----------GT1 <---------GLK1(1) -ANAC58        --------->LBD16                                                          <---------ANAC58 -ANAC58        <---------HSFB2a(2)                      <---------REM1(1)               <---------AtLEC2 ----------------ANAC81                                  --------->ALFIN1                <---------ANAC58 ---------DOF2 <---------LBD16                           <-----------RAV1(1)    <-------MYC3 --->ID1   <----------DOF2                       <-------GAMYB                  ------->MYC3 ->WRI1<----------DOF2       <---------AHL20(2) <-----------RAV1(1)      <------ZmHOX2a(2)       <---   tctttttttctttctttcctggaattcgtattgaattgacaaaaatttctctgttgatggtgttgctatacctcgatcaccatgtgtttttgcatgtttc  29893000                                               --------->ARR14(2)                                            <---------ANAC46                                            ----------->GT1                                           <-------TEIL                                         <---------GLK1(2)                    <------MYB83                                         --------->ARR11(1)               --------->ZAT2                                         --------->ARR14(2)               --------->At4g35610                                       ----------->ARR10               <---------At4g35610          <                                   <---------TOE2(3)                <-------TEIL                 ----      <---------YAB1      <---------LBD16<---------ARR14(2)<---------ANAC46   <------MYB46(1)    <--- -------DOF2         --------->ZAT14<---------REM1(1)    ----------->GT1  <---------ZAT2       ------   tttgatttctaatagcattcttgtatactctgggtttgatgtagattcgtatatacaagaggtgtataggttcatcagcttggtttttcaagttgtccta  29893100  Previous    Next  AGI:  At1g79440.1    Description:  ALDH5F1 (SUCCINIC SEMIALDEHYDE DEHYDROGENASE); 3-chloroallyl aldehyde dehydrogenase/ succinate-semialdehyde dehydrogenase. Identical to Succinate-semialdehyde dehydrogenase, mitochondrial precursor (ALDH5F1) [Arabidopsis Thaliana] (GB:Q9SAK4;GB:Q9SEK4); similar to ALDH10A9 (Aldehyde dehydrogenase 10A9), 3-chloroallyl aldehyde dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G48170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64948.1); similar to hypothetical protein OsJ_005402 [Oryza sativa (japonica cultivar-group)] (GB:EAZ21919.1); similar to aldehyde dehydrogenase [Saccharum officinarum] (GB:ABY28388.1); contains InterPro d Range:  from: 29887103    to: 29892305    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g79450.1    Description:  LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein. similar to LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana] (TAIR:AT1G16360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64944.1); contains InterPro domain Protein of unknown function DUF284, transmembrane eukaryotic; (InterPro:IPR005045) Range:  from: 29892585    to: 29895038    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version