Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           <---------ANAC55(2)                      --------->ANAC58                                         --------->ANAC55(2)                      --------->ANAC58                                    --------->YAB1                              --------->GLK1(1)                                 <---------ICU4                                 <---------GLK1(1)                                --------->ICU4                                 --------->ARR14(2)                                <---------YAB1                                 <---------ARR14(2) ---                              <--------HAHB4   <-----------GT1                <------ZmHOX2a(1)   ===                              --------->YAB1<---------ARR14(2)            --------->LBD16         ===                             <---------YAB1 --------->ARR14(2)           <---------HSFB2a(2)<-------- --------->At4g35610<-----------GT1<---------YAB1      ---------->ID1   <---------LBD16  <-----------GT1 <---------At4g35610--------->MYB52(1) --------->MYB52(1) <----------DOF2--------->HSFB2a(2)<--------   ctcatctgataatcaattgaattaacagagtatcattatcataacgtattcacatttgttctttaacaaaaacatccggaggaaacccaattcacttttc  29891900                  <---------HSFB2a(2)                  --------->LBD16                  --------->HSFB2a(2)                ------>ZmHOX2a(2)               --------->CCA1(2)               <------ZmHOX2a(2)              --------->ARR14(2)              <---------ARR11(3)              --------->ARR11(3)              <---------ARR14(2)                                                    ------>ZmHOX2a(1)              --------->AGP1                                                        <----------DOF2 --->ZmHOX2a(1)--------->ARR14(1)                             <---------YAB1     <------ZmHOX2a(2) =====================HOX2a_HOX2a                    <---------YAB1             --------->ARR14(2) ======================HOX2a_HOX2a                  >>>>>>>>>>>>>>>>>LFY  --------->AtMYB61 --------- --DOF2     ----------->ARR10                      <-----------GT1       --------->MYB46(3) <-------- -DAG2  --------->AtMYB61  <---------HSFB2a(2)--------->CCA1(2)        <-----------GT1    <---------LBD16   ctccatgagaccacaagatccgagaaatactagaaaaactgaattcagatatataaccattgttctgattttgaaaccactcgatccttttctccgtgag  29892000          --------->ARR14(2)                                             <---------ALFIN1      --------->SPL7                                                    <------NtERF2     ------>NtERF2                                                     ------>NtERF2               <-    --------->LBD16                                                   --------->bZIP60(1)          <-    <---------SPL7 --------->AHL20(2)                                 ----------->HVH21       -------  --------->At4g35610      --------->AHL20(2)                         <---------ETT(2)       <------ZmHOX2a(1)  <---------LBD16----------->GT1                                      --------->ETT(2)     --------->ALFIN1  <---------At4g35610    <---------ANAC55(2)                     ----------->RAV1(2)      <------ZmHOX2a(1) >LBD16   <---------ARR14(2)               --------->ATHB12    <-----------GT1          --------->ALFIN1 ---HVH21 ------->TEIL   ----------->GT1--------->GLK1(2)      <<<<<<<<<GT-1        --------->CCA1(2)   agactgcggacgaatccacgagtaaatatgtaaatacagaagaatcgattgagaagacagacgatttacctggcgacactgagaagagacgaggaggagg  29892100                                            --------->ANAC46                                           ------->MYC3                                           <-------MYC3                                           ------->MYC2                                           <-------MYC2                                          --------->ANAC46                               --------->DEAR3(1)                            --------->DEAR3(1)                            ------->GAMYB --------->ANAC58                           --------->DEAR3(2)   --------->ZAT2        --------->bZIP60(1)<------------AtMYB77 <---------At4g35610        <---------bZIP60(1)--------->MYB46(3)   --------->At4g35610     ----------->HVH21     <---------MYB55(2)   <---------ZAT2     ----------->TGA1   --------->MYB46(3)--------->ANAC58 -----MYB46(1)       <---------ETT(2)   <---------ALFIN1            <---------ALFIN1 -----MYB83       <----------DOF2<---------MYB52(1)<---------At4g35610                     ---------- -->ALFIN1      --------->At4g35610    <---------REM1(2)------>ZmHOX2a(1) --------->HSFB2a(2) -------   gaggtatgtgacgagatgagctttcgacaaccgccgatggctacacgcgctgctgctcctattaccatcaccacttcccaaacttcaatcgaacaaagat  29892200                                                                           --------->ANAC46                                                                           --------->ANAC58                                                                  <---------RVE1(1)                                                     <-----------RAV1(1)   ----------->GT1        <--                                            ------->GAMYB         <---------CCA1(1)--------->ARR14(2)                               <---------HSFC1(2)<---------AHL20(2)        --------->ANAC58      ----                         --------->REM1(2) --------->ANAC58      <---------ARR11(3)<---------ARR11(3)                    --------->At4g35610    --------->ANAC58      --------->ARR11(3)--------->ARR11(3)   --------->ZAT6   --------->ZAT2       --------->MYB52(1)      <---------GLK1(2)--------->CCA1(1) >DOF2             --------->GLK1(2)  --------->ANAC46          <---------RVE1(1) --------->RVE1(1)-- -->YAB1      <------ZmHOX2a(2)--------->HSFC1(2)--------->AHL20(2)    <-----------GT1           <---   gacgaacactagtgagatcagaagctgtgaagaagctactaggcaacgaaattatatgttgtcaagagattttttacaagtaaaatatcttcaaaattgg  29892300                                                                      ----------->HVH21                                                                     <-------PIF5                                                                     ------->PIF5                                                         <---------TGA1a                                                         <---------ANAC46                                                         <---------ANAC55(2)                                                         <---------ANAC55(1)                                                         <---------ANAC58                                                         =================================MYC_MYB                                                         <---------O2------->MYC2                                                         --------->O2<-------MYC2                                                    <---------ICU4   ------->MYC4                   <-------GAMYB                    --------->YAB1   <-------MYC3                   ================================================MYC_MYB              <---------ZAT2                      <---------YAB1     ------->MYC3              --------->ZAT2                    <---------AHL20(2)   <-------MYC4              <---------TGA1a                   <--------HAHB4      --------->PIF3(3)              --------->O2                      --------->YAB1      --------->TGA1a              --------->TGA1a                   <---------ICU4      <---------TGA1a              <---------O2                      --------->ATHB51    ======================MYC_MYB              =============MYC_MYB              -------->ATHB1      <---------O2              =============MYC_MYB              -------->HAHB4      >>>>>>>>>>HY5            <-----------RAV1(2)                <---------ATHB51     <---------PIF3(3)       --------->YAB1                          <---------YAB1       --------->O2       <---------ICU4                          --------->ICU4       --------->ANAC46        ------>NtERF2     *TSS----------->HVH21                =========================MYC_MYB                  --------- --------->LBD16  ----------->GT1         <-------GAMYB  =====================bZIP_bZIP    --------->LBD16 <-----------HVH21<------MYB83            ====================================MYC_MYB      <---------ANAC46 ----ZmHOX2a(2)   <------MYB46(1)        ----------->GT1 <---------ANAC58         ------->GAMYB ----->ARR14(2)  <---------MYB46(3)      <------MYB46(1) <---------bZIP60(2)    <---------At5g28300 ---->ZmHOX2a(2)--------->ALFIN1       --------->ALFIN1 ----------->STF1       <-----------GT1   <--- ------ARR14(2) <--------P<-----------GT1<------MYB83 ----------->TGA1--------->ALFIN1    <---------LBD16   atccgtcaaaaatgacaggtgggttatttgactgtattcgagtgggttaattattaatgacgtgtaatccacgtggcagtttaaccgcatttgccgggtt  29892400                                                                           <---------AHL20(2)                                                                           <---------AHL20(1)                                                                        <---------AHL20(2)                                                                    --------->YAB1                                                                    <---------ICU4                                                                   <---------YAB1                                                                   --------->ICU4           ---------                       <----------DOF2                         <---------ANAC46            <---------YAB1             <---------MYB52(1)                                <---------ANAC58   <-----------GT1           <---------ANAC58                                    <---------ANAC58  <-----------GT1 >LBD16    <---------ANAC58                         --------->TOE2(3) <---------YAB1      <---------TOE1(2) ------MYB46(3)  <---------AHL20(2)    <----------DOF2 --------->AHL20(2)  --------->AHL20(2)     ---   tgttcgaaaacttccgttttttattctttacccaaattgccctttaaaaaataacataaaaattggcttattattattttatttttccctcccatgataa  29892500                                                                                     *TSS                                                                                    --------->CCA1(2)                                                                    --------->ARR11(3)                                                              ------>ZmHOX2a(2)    --------->ARR14(2)                                                             <------ZmHOX2a(2)     <---------ARR11(3)                               --------->REM1(2)            <---------AGP1 --------->LBD16 --------->YAB1                            <---------ANAC58                --------->ARR11(3)     <---------ARR14(2)                            <---------ANAC58               --------->RVE1(1)       --------->ARR11(3)                     <----------DOF2        <---------ANAC58--------->AGP1<---------HSFB2a(2) >YAB1  ---------->DOF2  <-----------GT1    <---------ANAC58<---------ARR11(3)   ----------->ARR10 ---->GAMYB      <----------DOF2 --------->ETT(2)       ---------->DOF2   --------->HSFB2a(2)     <--   cagcatttgtcaaagtcgtctttcttttttccttgtcgagagttttgcttcttcatctaaaagatctatacatcttccccaagtagatatgtttcataag  29892600                                 ------>ZmHOX2a(2)                                <------ZmHOX2a(2)                               <---------ARR11(3)                               <---------ARR14(2)                               --------->ARR11(3)                               --------->ARR14(2)                               <-----------ARR10                               --------->GLK1(2)                               <---------AGP1                              <------ZmHOX2a(1)            ------>NtERF2                            <---------TOE2(2)              --------->ORA47(1)     ------>MYB83           <---------TOE1(2)              <---------RAP2.6(3)     ------>MYB46(1)     <---------ANAC58                 <---------ANAC58                   --------   <---------MYB59       <---------ANAC46                 <---------ANAC46               <------ZmHOX2a(1) -------MYB59            <---------ANAC58                 <---------ANAC58        <---------REM1(1)   cctaacctaacattcttcccctcattcgcgtaggatctgttcttcccaaaacgactcatgccgtccattcgattcggaatatagttgtagaggagatttc  29892700                                                               ------>ZmHOX2a(2)                                                              <------ZmHOX2a(2)                                                       --------->ALFIN1                                                       <---------DEAR3(1)                                      --------->HSFB2a(1)    <---------ARR14(2)                                      <---------HSFB2a(1)    --------->ARR14(2)                                      <---------At4g35610--------->ATERF1(1)                                      --------->At4g35610<------NtERF2                                   <------NtERF2      ================HOX2a_HOX2a                                  ------>NtERF2       --------->ATERF1(1)                                --------->LBD16       <------ZmHOX2a(1)                                <---------LBD16<-----------HVH21             --------->LBD16                               --------->DEAR3(1)     ===============HOX2a_HOX2a                             <---------At5g28300   <------NtERF2        <---------GLK1(1)       -----               <---------DEAR3(1)--------->ANAC46<---------DEAR3(1)     --------->GLK1(1)       -----     <---------ATHB12   --------->GLK1(1)  <---------ALFIN1 <------NtERF2  <---------LBD16      ----- ->GLK1(1)<---------ARR11(3)<---------ALFIN1  --------->DEAR3(1) ----------->RAV1(2)          -------   atttctaatcaatttcttcggtgatgagttccaccgcggcatcttccaccgtcggaggaggcggatcgtctgagatttccggtgtcaaaaaaacctccaa  29892800  Previous    Next  AGI:  At1g79440.1    Description:  ALDH5F1 (SUCCINIC SEMIALDEHYDE DEHYDROGENASE); 3-chloroallyl aldehyde dehydrogenase/ succinate-semialdehyde dehydrogenase. Identical to Succinate-semialdehyde dehydrogenase, mitochondrial precursor (ALDH5F1) [Arabidopsis Thaliana] (GB:Q9SAK4;GB:Q9SEK4); similar to ALDH10A9 (Aldehyde dehydrogenase 10A9), 3-chloroallyl aldehyde dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G48170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64948.1); similar to hypothetical protein OsJ_005402 [Oryza sativa (japonica cultivar-group)] (GB:EAZ21919.1); similar to aldehyde dehydrogenase [Saccharum officinarum] (GB:ABY28388.1); contains InterPro d Range:  from: 29887103    to: 29892305    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g79450.1    Description:  LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein. similar to LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana] (TAIR:AT1G16360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64944.1); contains InterPro domain Protein of unknown function DUF284, transmembrane eukaryotic; (InterPro:IPR005045) Range:  from: 29892585    to: 29895038    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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