Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->ANAC58                                                                                    --------->ANAC58                                                                                 ----------->TGA1                                                                                 ----------->HVH21                                                                               --------->ANAC55(2)                                                                               <---------ANAC58                                                                               <---------ANAC46                                             --------->At4g35610               <---------ANAC58              <------ZmHOX2a(1)              --------->ZAT2       <---------ANAC55(2)        <---------YAB1            --------->YAB1   ------>ZmHOX2a(1)        <----------DOF2 ------>MYB52(1)      --------->GLK1(2) --------->MYB52(1)        --------->ANAC55(2) ---------->DOF2   aaacggtttgatgaaaggattgagaatcgaatcgaatcagagtaacgagcttcctactgagaaacaatacatatcgccctttcgtgacgaaagcagagaa  29758100                                  <---------ZAT18              ------>NtERF2                                 <---------MYB52(2)        --------->O2                                --------->At4g35610        <---------bZIP60(2)                               ------->GAMYB               <---------O2                               ======================================MYC_MYB                            ----------->RAV1(1)            <---------TGA1a             <---------WOX13(1)                            --------->MYB52(1)          <----------ID1               --------->ATHB12                         --------->ANAC58           =================bZIP_DOF       <---------YAB1                         --------->ANAC46           ---------->DOF2             <---------AHL20(2)                        --------->DAG2             --------->CCA1(2)       --------->AHL20(2)                       ==============================================bZIP_DOF  <---------ICU4       -            >>>>>>>>>TBF1--------->ANAC58         --------->ARR11(3)       <---------AHL20(2)       *TSS      <------ZmHOX2a(1)---------->DOF2            <---------ARR11(3)   <---------AHL20(2) <---------TOE2(3)    ------------------------>ANAC81 ------->TEIL  <---------ARR14(2)   --------->AHL20(2)--------->YAB1   acagagaaggagaagaagaagatgaaaaagcaacagcgaaccctagagagaagatatagcgacgaggccttatttttttaatttttatgattgatgatgc  29758200         <----------DOF2         <---------DAG2        <---------ANAC58                                                                  <---------AHL20(1)        <---------ANAC58                                                                  --------->AHL20(1)    <------------CBF                                                                  --------->YAB1   <---------ICU4                                                               <---------ANAC55(2)   --------->ATHB12                  --------->AHL20(2)                         --------->ANAC55(2)  <---------YAB1                     <---------AHL20(2)                     --------->ARR11(3)  <------ZmHOX2a(2)                <---------YAB1                        --------->AHL20(2) <---------ARR11(3)              <--------HAHB4                      --------->AHL20(2)--------->AHL20(2) --------->ARR11(3)              --------->YAB1                     --------->AHL20(2)--------->AHL20(2) -------->GLK1(1)               <---------YAB1     ----------->GT1--------->YAB1----------->GT1   agagatcattgcttttccaaattatctaaaaactattattaaaacaaaaaaaactgataaatctccaaaaataaaaaaaatcatgtaataaaaatattaa  29758300                                                                                                   --                                                                                             --------                                                                                             <-------                                                                                            <--------                                  --------->GLK1(2)                                      --------->ATHB51                              --------->YAB1                                            --------->ICU4                      --------->ARR14(2)                                             --------->AHL20(2)                      <---------ARR14(2)                                  <----------DOF2<---------ICU4                     <---------GLK1(1)              <---------YAB1       <---------ANAC58<---------AHL20(2)  --------->DAG2     --------->GLK1(1)         --------->ZAT6            <---------ANAC58--------->AHL20(2) ---------->DOF2     <---------CCA1(2)        <---------TOE2(3)   <---------YAB1     <---------AHL20(2)   gagaaaagttgaataaactatgcatatccaactaataatctgaaaattaagactatttttgtcaaactataatttgctttagtaagtttaattatttatt  29758400                                                 --------->O2                                                 <---------O2                                                 ===============================================MYC_MYB                                                 =====================================MYC_MYB                                                 --------->TGA1a                                              <---------ARR14(2)                                             ------>NtERF2                                            <---------ZAT18                                            --------->ZAT18                                         --------->ALFIN1                                        ------->MYC4                                        <-------MYC4                                        <-------MYC2                                        <-------PIF4                                        ------->PIF4                                        <-------PIF5                                        ------->MYC2                                        ------->PIF5                                       <---------TGA1a                                       --------->TGA1a                                       ====================bZIP_bZIP                                <---------ANAC58 =====================================MYC_MYB                                <---------ANAC58 <---------TGA1a                                <---------bZIP60(2)                        ===================================MYC_MYB                          <--------                        =========================MYC_MYB                                    <--------                        -------->P     --------->ANAC55(2)                                  <------MYB83                        ------>MYB46(1)<---------bZIP60(2)                                  <--------                        --------->ANAC58------->MYC3                                        <------MYB46(1)                        ------>MYB83   <---------ANAC46                                    <------MYB46(1)                        >>>>>>>>>MYB98 --------->O2                                        <---------MYB46(3)                        --------->ANAC58<-------MYC3                                       <------MYB83                       ------>MYB46(1) <---------ANAC58                                    --------->MYB59                     <---------MYB59   ===============================================MYC_MYB                     --------->MYB46(3)<---------O2<---------ANAC46                       --------->ALFIN1                    --------->ANAC46   <---------ANAC55(2)                               --------->ALFIN1         <---------YAB1------>MYB83<-----------HVH21                                     <--------P <      <---------YAB1--------->ANAC58   <---------ANAC58      <---------ANAC46         <---------TOE2(3) -------->ID1       --------->ANAC58  ------------>OsbHLH66  <---------ANAC58         <---------TOE1(3) ->AHL20(2)        -------->P----------->HVH21--------->ARR14(2)                   <---------MYB52(1) --AHL20(2)        ========================================MYC_MYB                <---------RAP2.6(3) -AHL20(2)         ==============================MYC_MYB     <---------ANAC58<--------P <-------GAMYB   tgtcgttcattatagttaacttacccaacccatgacttgtcacgtgcggactcgtgtgtgtttgtgtgtaaatcgacaggtagccgttagggttgggtct  29758500                                                          <---------ANAC58                                                          <---------ANAC46                                                       <----------DOF2                             <---------ARR14(2) <-------TEIL                             --------->GLK1(2) --------->ARR14(1)                             ------->TEIL     <---------ARR14(2)                --------->ANAC58              --------->ARR11(1)              --------->ANAC46      --------->TOE1(3)--------->ARR14(2)     --------->ARR14(2)              --------->ANAC58      --------->TOE2(3)--------->GLK1(2)     <---------HSFB2a(1)              --------->ANAC58    <---------TOE1(3)  <---------ARR14(2)    <---------HSFC1(2)          <---------At4g35610   <-----------GT1    <---------GLK1(2)      --------->HSFB2a(1)         --------->At4g35610 -ANAC46        --------->ANAC58             --------->HSFC1(2)       >>>>>>>>>>E2Fb -ANAC58       <---------ZAT18              ----------->ARR10        <-----------GT1              --- -ANAC58  ---------->DOF2    --------->ARR14(2)--------->CCA1(2) ----------------------->TaNAC69(2)<- -------GAMYB  --------->ZAT18           <---------ANAC46 <---------ANAC58 ----------->HVH21      <--   ggggttaaccttacaagcgcgctagaatctgaatctggccatggcgaagattcgagtctttcgtggtctatttcccgctcacgctcccgctccagttcaa  29758600                                                              <------MYB46(1)                                                              <------MYB83                                                             --------->MYB59                                                      ----------->GT1                                                  <---------ARR14(2)                 <---------ICU4                                    --------->AHL20(2)<------MYB83              --------->ZAT14 ------>ARR11(3)                    <---------AHL20(2)<------MYB46(1)           --------->ZAT18 -----ZmHOX2a(2)   <---------YAB1  <---------WOX13(1)--------->MYB59            <---------ZAT18 -------ARR11(3)<---------YAB1  <---------YAB1    --------->ARR14(2)      --------->ANAC46<---------YAB1   gatcatcgtcgtcttcttcttattcttctccaatttgattaattagagattggatttggtaatttggttatcttatacgaagtggactcattacaattac  29758700              <---------ATHB12        <-----------HVH21                                                      --------->ZAT14       ----------->GT1                                                   ------>ZmHOX2a(1)        <--   <---------AHL20(2)                                                 ---------->ID1              ---  --------->AHL20(2)                                                 <-----------GT1       ----------  <---------AHL20(2)         ----------->GT1                     <----------DOF2<-----------RAV1(2)   acatttaaattgtcaaatcaatgctcgaatgttgttatatcgcttaaatccaatttcagtgatgttccttttttccttatgtgcaggcgattttggtgaa  29758800                                                                                             --------                                                                   --------->ARR14(2)       ---------                                      <---------ANAC58             <---------GLK1(2)        <--------                                      <---------ANAC58             <---------ARR14(2)     --------->YAB1                             <----------DOF2              <------MYB46(1)            --------->ZAT14   --------->YAB1          <---------ZAT2                 <------MYB83              <----------DOF2 -------ATHB12             <---------At4g35610          <---------ANAC58            <---------DAG2 ------>ICU4               --------->At4g35610          <---------ANAC58     ------>ZmHOX2a(1)    <-- ->GT1                     --------->ZAT2               <---------ANAC46    --------->TOE2(3)<-------   atcattcatgttcaacttgcgatagatcgagctgtaagtttcttatcaattgctcttggctggtttgcagatttgtttcctaagtactttactcataatt  29758900                                                                                              <------                                                                                        <---------AtLEC2                                                                                  --------->At4g35610 <---------WOX13(1)                                                               <---------At4g35610 ->ATHB51                                                                     --------->AtMYB61<----- >ICU4                          --------->At4g35610                 <---------At4g35610<---------REM1(2) -YAB1                          --------->GLK1(1)             <---------At4g35610 <---------ZAT2    - -------YAB1                  <------ZmHOX2a(1)               --------->At4g35610 --------->ZAT2 <--- --ICU4           --------->GLK1(2)<-------TEIL           --------->YAB1     --------->MYB46(3)<-----   tcgattgacattaacaggctaatctttcaagaggagatgcatatgttgaattcaaggcaaaaatagctgatgctgagaaaccacagctgtacatggatgg  29759000  Previous    Next  AGI:  At1g79090.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23830.1); contains domain PTHR21551 (PTHR21551) Range:  from: 29754020    to: 29758200    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g79100.1    Description:  arginine/serine-rich protein-related. similar to SR45 (arginine/serine-rich 45), RNA binding [Arabidopsis thaliana] (TAIR:AT1G16610.1); similar to SR45 (arginine/serine-rich 45), RNA binding [Arabidopsis thaliana] (TAIR:AT1G16610.2); similar to putative arginine/serine-rich protein-like [Solanum tuberosum] (GB:ABB55376.1); similar to putative arginine/serine-rich protein [Solanum tuberosum] (GB:ABB72811.1); contains domain RNA-binding domain, RBD (SSF54928); contains domain RIBONUCLEIC ACID BINDING PROTEIN S1 (PTHR15481) Range:  from: 29758541    to: 29759281    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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