Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            --------->YAB1                          --------->TOE1(3)                       --------->MYB52(1)                     <---------MYB59          <----------TaMYB80         <---------KAN4(2)--------->TOE2(3)      <---------ANAC58                           <--------      ----------->GT1<---------MYB52(2)          <---------ANAC58              ------>ZmHOX2a(2)    <---------ANAC46--------->ZAT2        --------->ANAC46                    <------ZmHOX2a(2)  ------->TEIL      <---------At4g35610   --------->ANAC58                   --------->ARR11(3) -------TEIL        --------->At4g35610   --------->ANAC58                   <---------ARR11(3) ------At4g35610   <-----------ARR10  --------->YAB1                        --------->GLK1(1) ----->At4g35610 --------->LBD16     <---------ATHB12               <----------DOF2     --------->At4g35610 ---At4g35610   --------->LBD16    --------->WOX13(1)              <---------ANAC58     <---------At4g35610 -->At4g35610  <---------LBD16 --------->At4g35610<----------DOF2  <---------ANAC58     --------->ZAT2   gatgcatcgggtataatcccggagctaaccataagctcaatcacacgaatggctttcttcaatctattggctttgcagagatcgtacaagagctgagtag  29753400                                    <----------DOF2                          --------->LBD16                         --------->ANAC46                         ======================bZIP_DOF                         <---------O2                         <---------TGA1a<---------HSFC1(1)                       <---------LBD16                         --------->TGA1a<---------HSFB2a(2)                   <----------DOF2                         <---------ANAC55(2)                              ---------->ID1 <---------At4g35610     <-------TEIL        --------->O2   --------->HSFB2a(2)     --------->ARR14(2)       --------->At4g35610  --------->At4g35610    --------->ANAC55(2)                    <---------ARR14(2)   <-----------HVH21 -ANAC46   <---------ANAC46----------->HVH21         <---------MYB52(2)  <-----------HVH21   aatgagctacattgggtttatgccctcccgtgactaaactttctagatgagagaaactatcgctcaaattcggctcgtcgcttctcgggtcatcagaaaa  29753500                                              <---------LBD16                                            --------->DAG2                                <---------------AGL15                                --------------->AGL15                               <-----------------AGL2                               ----------------->AGL2                               ------>ZmHOX2a(2)                               ----------------->AGL3            --------->ARR14(2) <-----------------AG            <---------ARR14(2) <-----------------AGL1        ========================================MADS_MADS        ----------------->AG   ----------------->AGL1   --------->LBD16            <------ZmHOX2a(2)                                                   <--  --------->ANAC58           <---------ARR14(2)  --------->ATERF1(1)                              ---  --------->ANAC46           --------->ARR14(2)  <------NtERF2              <-----------HVH21--------  --------->ANAC58<---------GLK1(1)       ---------->DOF2        <---------TOE2(3)--------->At4g35610 <---------LBD16  --------->GLK1(1)    --------->YAB1 <----------DOF2   <---------LBD16      --------   cgacccggaatccaaatcgggtttccaactggatccagtaatggtaaaggcggagtctttaggggataatgttatctgggtcgaagctaaaaccctagca  29753600                                                                                       ------>NtERF2                                                                                      <---------bZIP60(1)                                                                                      <---------TGA2(1)                                                                                      --------->ANAC58                                                                                      --------->ANAC58                                                                                      --------->TGA2(1)                                                                                      --------->ANAC46                                                                                    <---------ATERF1(1)                                                                                   ----------->TGA1                                                                                 <---------At4g35610                                                                                 --------->LBD16                                                                       <---------DEAR3(1)        --------->MYB52(1)                                          <---------DEAR3(1)--------->bZIP60(1)       ----------->TGA1                                            <---------LBD16<-----------HVH21       ----------->HVH21                                 ------>MYB83 <------NtERF2----------->HVH21  <----------DOF2                                        ------>MYB46(1)   --------->HSFB2a(1) -------ALFIN1                                         --------->TOE1(2)   --------->HSFC1(2) ------>REM1(1)         <---------TOE2(3)              --------->TOE2(2)  --------->ICU4 ->ANAC58      <------ZmHOX2a(1)          --------->ALFIN1    <----------DOF2  <---------LBD16 ->ANAC58 <---------ANAC46              --------->ALFIN1--------->MYB52(1)<---------YAB1   acacctttactgacggaggagaaatgaaggaaaccagaagggatgtgggaaacaaaacctacggcttttctcggcgatgattccggtgacgccatggata  29753700                 <---------DDF1                <---------ETT(2)                ----------->HVH21                       <------ZmHOX2a(1)                    --------                --------->ETT(2)                  ------------------------>ANAC81          ------->GAMYB           --------->ZAT14                      ---------->DOF2                          --------->ANAC58        <---------ANAC46           --------->SPL7--------->DAG2                          --------->ANAC58      --------->ZAT18   <---------ANAC58   --------->YAB1                                -------->P      --------->ZAT14   <---------ANAC46  <---------ATHB12         ---------->DOF2     --------->MYB46(3)      <---------ZAT14   <---------ANAC58--------->WOX13(1)--------->At4g35610    <-----------GT1-----   agactgagttcagtagagtcgacatggcttaaaatcggacagcaatcagaaaaaggaaggagatgaaatgaaagttttgggttttacgaacaacccagaa  29753800                  <----------DOF2               <-----------GT1             <---------ANAC55(2)             --------->ANAC55(2)                                                                 <---          --------->ICU4                                                                         <---        <--------HAHB4                                                                          <----        --------->YAB1                                                                     --------->DAG2       <------ZmHOX2a(2)                                                              ===============       <---------YAB1                                                                 ------>ZmHOX2a(2)       ====================================HOX2a_HOX2a       <-----------GT1         ================      <---------ARR11(3)                                  <---------YAB1             <------ZmHOX2a(2)      --------->ARR11(3)             *TSS               --------->ATHB51             --------->CCA1(2)     ====================================HOX2a_HOX2a    <---------AHL20(2)          --------->AGP1     <------ZmHOX2a(1)              ------>ZmHOX2a(1)   --------->AHL20(2)          <---------ARR14(2) ---------->DOF2------->TEIL       --------->TOE2(3)    <---------ICU4              --------->ARR14(2) ->LBD16<---------ICU4 <---------ALFIN1       ------------>CBF   <---------YAB1   ----------->ARR10 ----->DOF2 --------------->AtSPL8------>ZmHOX2a(2)    --------->ICU4          <----------DOF2  -----   aagaaaaggatcattatgtactttcccactctctgatcctaaatcaaattcaatctaattatttttcattcttgtgttcttctttagatccgaaaggttt  29753900                                                     --------->AtMYB61                                                  --------->ANAC46                                                 <---------ZAT14                                                 --------->ZAT18                                               --------->REM1(2)                                             <-------MYC3                                             <-------MYC2              --------->LBD16                ------->MYC2              ------>NtERF2                  ------->MYC3       <-----------GT1                      <---------ANAC58   <----------DOF2      <---------YAB1      <---------ANAC46 ---MYB83    <---------ALFIN1               <---------ANAC58 ---MYB46(1) --------->ANAC46             <---------ANAC58        <---------RAP2.6(3) -----AtMYB61--------->DEAR3(1)           <---------ANAC58       --------->ANAC46 =================HOX2a_HOX2a          --------->TOE2(2)         --------->RAP2.6(2)<---------ANAC58 =================HOX2a_HOX2a          --------->TOE1(2)  <----------DOF2           <---------ANAC58< ---->MYB59------>ZmHOX2a(1)         <---------ATHB12<---------ALFIN1 <---------ANAC55(2)         <--   ggttccttttttcctccgcctctgttatcaacgcgtccaaacatgcgcgtgtacaccactcttttagccgaaacgtgaatgctcgagcttgtgagagaag  29754000                                  --------->YAB1                              ---------->DOF2                       --------->YAB1                       --------->ATHB12                       <--------HAHB4                 ----------->GT1                       <---------ICU4             --------->ATHB12                        <---------AHL20(2)  --------->SPL7      <---------YAB1             <---------YAB1                  ---------->DOF2 ---------SPL7        --------->ICU4          ----------->GT1               ---------->DOF2   ------- -------------AtSPL8  <---------ATHB12      <---------GLK1(2)       ----------->GT1     --------->GLK1(2)   atggtacgaagaacaaattgagtaatcattaccaaagcataactcagaatgtttattggtaaaacagagtaagaaaaaaaaaggaaagagaatttatcaa  29754100                                           <------ZmHOX2a(2)                                          <---------ARR11(3)                                          --------->ARR11(3)                                       --------->YAB1                                          <-----                                --------->ANAC58                                            --------- -->YAB1                        --------->ANAC58      ---------->DOF2                    <---------ICU4   aaacataaacaaggtttcaaaaacaaatatcgaaacgacaatgagatcaactaaacaaaagacagaaatacaaatgcctgaaacctcttcataagttctg  29754200                                                                                                    -                                                                                                   <-                                                                                                  ---                                 ------>MYB83                                                   <----                       --------->ZAT14                                                          -----                       <---------ZAT14                                                        <------                 <-----------GT1 ------>MYB46(1)                                              -------     ---------->DOF2 <---------ZAT14        <---------ALFIN1                                  -------   --------->TOE2(3) --------->ZAT14       <---------ZAT14                  --------->ZAT14   <------ ----HSFB2a(2) <-----------GT1 <---------MYB59               --------->ANAC46     --------------->AGL15 >ARR14(2) <----------DOF2     --------->AtMYB61  <----------DOF2 --------->ANAC46<---------------AGL15   caaaacctaaagacttttttctctgtacagagaccaaacttcttctccactgcttttacctataagacacaaaaccagtattgtccatttgaaggaagaa  29754300  Previous    Next  AGI:  At1g79080.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09900.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82234.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 29751865    to: 29753837    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g79090.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23830.1); contains domain PTHR21551 (PTHR21551) Range:  from: 29754020    to: 29758200    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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