Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            >>>>>>>>>>>>>>>>>LFY                       <---------ANAC58                                   --------->At4g35610                       <---------ANAC58                            <---------GLK1(2) ---->DOF2           <-----------GT1                           <-------TEIL     <-----------GT1 --MYB52(2)     --------->ICU4    ----------->GT1    --------->AtLEC2     <---------At4g35610   agctcagaaatttgagacataattttcgagccaatgtagtaaaatgtgagtagccttgcaatacgttcagaatttcagcttaaaacgattccaagtctaa  29744700                                                     ---------->DOF2                      <------ZmHOX2a(1)                                           <-------TEIL                                   ---------->DOF2                                           <---------ZAT14                           <xxxxxxxxxxxxxxx              <---------MYB59         <-----------RAV1(2)                           <-----------HVH21   <---------ATHB12        --------->CCA1(2)  --------->At5g28300         <---------ARR11(3)   ------  <XXXXXXXXXXXXXXXXXXXXMIR843<---------YAB1--------->ZAT14                --------->ARR11(3)  <------   ttccaatgaattgagacctaaaaaatgagctatgagagacacaggtacagtgaatgaaagagagagggattaagaagaacttacgcggtcgaggaagcgg  29744800                                                                                      --------->ARR14(2)                                                                                      <---------ARR14(2)                                                                                    --------->DOF5.7(2)                                <-----------HVH21                             <------NtERF2         <------NtERF2  <---------MYB52(1)                                  <---------ANAC46       <---------ANAC46<-------GAMYB                                       <------NtERF2     <-----------HVH21<---------ANAC46                                     ------>NtERF2   --------->At4g35610--------->DEAR3(1)                                 <---------DEAR3(1) xsmallRNA(se3)      <------NtERF2                                <-----------ARR10 --------->At5g28300 --->LBD16        --------->ZAT18                      <---------ANAC46 <---------LBD16 <---------LBD16 ---ANAC46        <---------ABI4(2)                    <-----------RAV1(1)--------->LBD16 --------->LBD16   gaatcagcgtcgggagagagagcgccgttgattctgtcatcgaattcagaactgattttgtgggagagtttcttcgcggcgtagacggtaaccggagaat  29744900       <------NtERF2      ------>NtERF2      --------->LBD16     <---------ANAC46    --------->ATERF1(1)    <---------LBD16    <------NtERF2   <---------RAP2.3(1)   <---------RAP2.6(1)   <---------ATERF1(1)   <---------DEAR4(2)   <---------RRTF1(1)   <---------ERF1   <---------ORA47(2)   ------>NtERF2  <---------RRTF1(3)  <---------DEAR3(1)                <------NtERF2  <---------ATERF1(2)              ------>NtERF2  <---------DREB2C(2)             --------->DEAR3(1)  --------->ATERF1(2)             <---------DEAR3(1)  <---------RAP2.6(2)            --------->ATERF1(1)  <---------RAP2.3(3)           <---------ATERF1(1)  <---------RAP2.3(2)          ----------->HVH21           ---------->DOF2          --------->ALFIN1  <---------RRTF1(2)          --------->DEAR3(2)       <---------ANAC58           <---------ANAC46  --------->ALFIN1         --------->LBD16             <---------ANAC46          <------ZmHOX2a(1) --------->ATERF1(1)     <---------LBD16 ---------->DOF2 ----------->HVH21 ---------->DOF2         -- <---------ABI4(1)      --------->MYB52(1)             <---------ANAC58 <------ZmHOX2a(1)          <-   agaggcggcgggagtagcaagaagaaaaccggagcgacggcgaaaaagaagaacatggagtgaaagggaagagaggagaaagaggagtgaagcttggatt  29745000                                                                              <---------ARR14(2)                                                                              <---------GLK1(2)                                                                              <---------ARR11(3)                                                                              --------->ARR14(2)                                                                 --------->MYB46(3)    <---------AHL20(2)                                                              --------->AtMYB61  --------->TOE2(3)                 --------->ZAT2                 ---------->DOF2 ------>MYB83--------->ANAC58 <-----------HVH21                <---------LBD16       ---------->DOF2 *TSS--------->ANAC58 ------->At4g35610      <---------ARR14(2)  <---------At4g35610 ------>MYB46(1)------->TEIL <-------- --------At4g35610  --------->At5g28300     --------->At4g35610----------->RAV1(1)     --------->AHL20(2)   cagcttcagagacaagactagctgtgaatccatttttctgggtttaagcagaaagtcgaaaagaccaacaacaacaacaagaacctcatataattttcga  29745100               <---------YAB1              <---------AHL20(1)              <---------AHL20(2)              --------->AHL20(1)             <---------------AGL15             --------->YAB1             --------->AHL20(2)            <---------YAB1          --------->ATHB51          -------->ATHB1          <--------HAHB4          -------->HAHB4          --------->YAB1          <---------AHL20(2)          <---------ICU4         --------->ICU4         <---------YAB1         <---------ATHB51       <---------ICU4      <---------AHL20(2)      <---------ATHB51                         <-----------GT1      --------->ICU4              <---------At4g35610      --------->AHL20(2)          --------->At4g35610 --------->TOE2(3)     <---------AHL20(1)     <---------YAB1  <---------AHL20(1)    --------->YAB1       <---------YAB1     --------->AHL20(1)                                 ------  --------->AHL20(2)----------->GT1         --------->ARR11(3)              ------->TEIL     -------- <---------AHL20(2) <------MYB46(1)         <---------ARR11(3)           --------->ICU4      -------- --------->AHL20(2) <------MYB83  --------->ZAT2      --------->YAB1     <---------ATHB12    -------- ---GT1--------->YAB1  >>>>>>>>>GT-1 --------->MYB52(1)              ------------>CBF--------->AHL20(2)   tatttaaaataattattatatttggttaatattatcagctaactaaaatattccatccataacaaaaaatatgcaatgaatatgagattaaaaacacaca  29745200       <---------TOE2(3)       <---------TOE2(2)       <---------TOE1(3)       <---------TOE1(2)                                                    ---------->DOF2   --------->ZAT2                                                          --------->AtMYB61   --------->At4g35610                                                  <------ZmHOX2a(1)   <---------At4g35610                                                --------->ANAC58 --->ANAC46                                                           --------->ANAC58 ->ANAC46                                                         --------->ANAC58 ->ANAC58                    <----------DOF2                      --------->ANAC58       <----------DOF2 ->ANAC58         <----------DOF2              ---------->DOF2 <---------REM1(1)   ---------->DOF2   aaatcagcttaggtttttgacttttgctaagcttttgaagaaaactaaaaaaagtcttgttcttggtgaagcaaggaccaaagctcaaagacttttgatc  29745300                  --------->YAB1           <---------ANAC46                                                <---------ICU4           <---------ANAC58            ------->GAMYB            <-----------ARR10   --------->ZAT14 <           <---------ANAC58          -------->P               --------->LBD16    <<<<<<<<<TBF1      <   ------>ZmHOX2a(1)        --------->YAB1 ---------->DOF2   --------->ANAC46<---------YAB1         - ----------->RAV1(2)       ----------->HVH21      ------>ZmHOX2a(1)       <---------ATHB12          -   atctcctgcaattgcttgaatcatattccatgacaatgcaaccccaaaagtcctccatcttctccgaaactactccatcattcttcttcactctgaaaac  29745400          ----------->GT1       <---------ATHB12 --------->ANAC58 --------->ANAC46 --------->ANAC58                                                         <---------ZAT14 -------MYC3                                                     <----------DOF2            --------- -------MYC2                                                  --------->ANAC58              <-------- ------>MYC2                         --------->ICU4           --------->ANAC58     ------->TEIL ------>MYC3                    --------->YAB1           <----------ID1   --------->ZAT14   <--------   cacatgccaatgaagttattcaaactatattccagcataattttgaaacttactcttaaacaacaagctttgctactatactatgagcctaatagatttt  29745500                                                                                   <---------ATHB12               <-----------GT1                                                    ------->TEIL        <---------TOE2(3)                                                --------->MYB46(3)        <---------YAB1                                                   --------->REM1(1)        ----------->ARR10                                              ----------->RAV1(1)  <---------YAB1          ----------->GT1                           --------->ANAC58 <---------ANAC58       <---------ZAT14          <---------MYB46(3) --------->AtLEC2     <-----------GT1 <---------ANAC58      ------>ZmHOX2a(1)     <---------TOE2(3)      --------->ANAC46<--------HAHB4 >ARR11(3)--------->ARR11(3)             --------->YAB1   --------->ATHB12     <---------ATHB12 -ARR11(3)<---------GLK1(2)            <---------YAB1    <------ZmHOX2a(2)----------->RAV1(1)   <---- -GLK1(2) <---------ARR11(3) --------->YAB1 <-----------GT1         --------->ANAC58--------->ATHB12   gatgcttattaagattttcacaatcctgcagttataaacttattaataacgttgttgggatcatttgtacatgcaacaacaatgaatcatttagctattc  29745600  Previous    Next  AGI:  At1g79050.1    Description:  DNA repair protein recA. Identical to DNA repair protein recA homolog 1, chloroplast precursor (RECA) [Arabidopsis Thaliana] (GB:Q39199;GB:Q39200); similar to recA family protein [Arabidopsis thaliana] (TAIR:AT2G19490.1); similar to RecA [Physcomitrella patens] (GB:BAF49678.1); similar to Os03g0639700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050738.1); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain RecA bacterial DNA recombination; (InterPro:IPR001553); contains InterPro domain RecA (InterPro:IPR013765) Range:  from: 29741854    to: 29745072    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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