Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------->ATHB51              --------->ICU4         --------->ANAC58                                --------->AHL20(1) -------->ARR14(2)                                      --------->YAB1 ---------ARR14(2)                                 ----------->GT1 ------------AGL15                               ---------->DOF2                             <------NtERF2 ----------->AGL15                            --------->ANAC58--------->ARR11(3)         --------->ANAC58 -------------AGL1                            --------->ANAC58<---------ARR11(3)         --------->ANAC58 -------------AGL2                         <---------ATHB12--------->YAB1           --------->ZAT14 - ------------>AGL3                       --------->WOX13(1)--------->AHL20(2)       <---------ZAT14 - ------------>AGL1                     <---------WOX13(1)--------->AHL20(2)     --------->ZAT6     -- -----GT1--------->ANAC58            --------->ATHB12 >>>>>>>>>>GT-3b     <---------ZAT6 --------->ANAC46   cagttatggagaagccataatttgagtagcattagacattgattaatcaagaaaagaaaaataatatcatctactagtgtcaacactacagacgcagcga  29740500                                               <---------ANAC58                                               <---------ANAC58            --------->ANAC46                  <---------LBD16      --------->YAB1                      <---------ARR14(2)      --------->AHL20(2)                  ------->TEIL     <---------ATHB51             --------------->AtSPL8                               --------->ARR11(3)     --------->ICU4               <---------------AtSPL3                         --------->ALFIN1     <---------YAB1             ------>ZmHOX2a(2)                               <-------MYC3 <------- -------->ANAC58  <---------ARR11(3)      --------->ARR14(2)                    ------->MYC3 <------- -------->ANAC58  --------->GLK1(2) --------->ZAT14                            <---------ANAC46 ------->ZAT18    <-----------ARR10 <---------SPL7 <-------TEIL           <-----------GT1    <-------   gcgagcaattatagacgcagtatctaaacgctgatcggtgtacgaatttgcggttcatttcaacgcttggcaaaattcacaacgtggaagacattgcgag  29740600                                                                      --------->ARR11(3)                                                                 <---------AHL20(2)                                                                 --------->AHL20(2) --------->ANAC46                                                --------->AHL20(1) <----------ID1   <---------MYB46(3)                        --------->AHL20(1)                      - --ANAC46        <--------P                                 --------->AHL20(2)                     -- --ANAC58       <-------GAMYB                               <---------AHL20(2)                  ----- --ANAC58      <---------ANAC46                          --------->YAB1          <-----------HVH21 ==   tttacgacaaactagtggggttgttttaagtaaactaaaacttgtaggggttttctcaaaaataaaataaaataacttgtaggggtcacaaatgaaaaat  29740700                                                                                      --------->At4g35610                                                                                    ------>ZmHOX2a(2)                                                                                   <---------At4g35610                     <------------------------ANAC81                               --------->GLK1(1)                 <---------TGA1a                                                   <---------GLK1(1)                 --------->O2                          <---------------AGL15       <------ZmHOX2a(2)                 <---------ANAC58                     <---------ANAC55(2)         --------->ARR11(3)                 --------->TGA1a                      --------->ANAC58            <---------ARR14(2)                 <---------O2                         --------->ANAC55(2)         --------->ARR14(2)                 <---------ANAC58                     --------->ANAC46            ------->TEIL           --------->ARR11(3)               <---------TGA1a                       <---------AGP1           <---------ARR11(3)               --------->O2                          <-----------ARR10           <---------ARR14(2)               --------->TGA1a                 ----------->HVH21           --------->ARR14(2)               <---------ANAC58               ------>ZmHOX2a(2)          <---------GLK1(1) ---------->ID1  <---------O2                  <---------At4g35610 -------->DAG2 ------>ZmHOX2a(1)            <---------ANAC58  ----------->GT1--------->MYB52(1) -------->DOF2--------->TOE2(2)           ------>ZmHOX2a(1)XXXXXXXXXXXXXXXXXXXX>MIR837-3P ---->AHL20(2)--------->TOE1(2)  <-----------GT1      --------->ANAC58    --------->At4g35610 ==========================bZIP_DOF  <---------At4g35610   <XXXXXXXXXXXXXXXXXXXXMIR837-5P      ------   aaaaagtattgaatatcctacgtggcatttgtttttttcatctcctacgtggcattacgaaatgaagaaaaaactgatctgacggatctgcttaaccagt  29740800                                                     <-------MYC4                                                     ------->MYC3                                                     ------->MYC4                                                     <-------MYC3                                                     ------->PIF5                                                     <-------PIF5                                                     <-------MYC2                                                     ------->MYC2                                                    <---------ANAC55(2)                                                    ===============================MYC_MYB                                                    <<<<<<<<<<ABI5                                                    <---------O2                 ------>ZmHOX2a(2)                                                    --------->ANAC55(2)        <---------ARR11(1)                                                    ===================MYC_MYB --------->ARR14(2)                     --------->GLK1(1)              --------->O2               <---------ARR14(2)                     --------->CCA1(2)              --------->TGA1a            <---------ARR11(3)                     <---------GLK1(1)      --------->TOE2(3)                  <-----------ARR10                    --------->ARR11(3)   ----------->RAV1(1)                   --------->ARR14(3)                    --------->ARR14(2)  --------->ANAC46        ------------>CBF--------->GLK1(1)                    <---------ARR14(2)<---------ALFIN1         --------->TOE2(3)--------->HSFB2a(1)                <------ZmHOX2a(1)     --------->ANAC58         ------->GAMYB   <---------ARR14(3)        <---------MYB52(1)            --------->ANAC46        --------->MYB46(3)<------ZmHOX2a(2)       --------->TOE2(3)            ----------->RAV1(1)  --------->YAB1        --------->ARR11(3)       --------->TOE1(3)         --------->ANAC58   <---------TGA1a           <---------CCA1(2)     <---------TOE2(3)           --------->ANAC46   <--------ABF1             <---------ARR14(1)     <---------TOE1(3)           --------->ANAC58   <<<<<<<<<<AtMYC2         --------->LBD16    --------->MYB52(1)         ===============================bZIP_DOF     <---------LBD16    <---------DOF5.7(2)       --------->AtMYB61     <<<<<<<<<<HY5   <---------ATHB12  --------->ARR11(3)<---------ARR11(3)--------->ANAC58 <-----------HVH21  --------->MYB52(1)   <----- --->At4g35610<---------TOE2(3)---------->DOF2      --------->bZIP60(2)   -------->P           ------   tgaagataacgttagtaaggaagatatccagaccaaagccacacaacattagccacgtgtcataaccacaatcacttaccggatcttctctccctcgtat  29740900         *TSS                                                                     <----------DOF2        --------->ANAC46                                                        --------->At4g35610      <---------ALFIN1                                                          <---------At4g35610      --------->ANAC58                                                        <---------RAP2.6(2)      --------->ANAC58                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      --------->ANAC46                                                   --------->MYB52(1)    ----------->RAV1(1)                                                  <---------ICU4 --------->ANAC46                                                       <---------ATHB51 --------->ANAC58                                                       <---------AHL20(2) --------->ANAC58                                                      --------->AHL20(1) ----ARR14(2)                                                         --------->YAB1 --->ARR14(2)   ------->TEIL       <------ZmHOX2a(2)       xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<-   ttgaagccacacaacatgaacattagggtgagaagagatcgagagaagaatagtttgatcatcttgtgagaaaaataatggctgcttcagtgatgctatc  29741000                                           <------NtERF2                                          <---------MYB46(3)                                          <---------DEAR3(2)                                          <---------ERF1                                          ------>NtERF2                                          <---------RAP2.3(1)                                         <---------RAP2.6(2)                                         <---------RAP2.3(2)                                         <---------ANAC46                                         <---------DEAR3(1)                                        <------NtERF2                                       <---------ATERF1(1)                             --------->ALFIN1         <---------At5g28300                          xxxxxxxxxxxxxxxx>smallRNA(si3)                         <---------At5g28300      <------ZmHOX2a(1)                <---------ZAT2         <---------RAP2.3(1)                <---------At4g35610    <---------DEAR4(2)                --------->ZAT2         <---------ORA47(2)                ----------->RAV1(2)   <---------DEAR3(1)                                       <-----                --------->At4g35610   <---------RAP2.3(2)                                     ------>NtERF2              <-----------RAV1(2)     <---------RAP2.3(3)            --------->ARR11(3)      <-------  ----------->HVH21      <---------LBD16--------->ATERF1(1)          <---------ARR11(3)      -------- --------DEAR3(1)     xxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <-----------HVH21        ------>ZmHOX2a(1)--   ttcggtgacattgaaaccagctggtttcacggtggagaagacggcggctagaggattaccgtcgctcacaagagctcgtccctccttcaaaattgtcgcc  29741100             <------ZmHOX2a(2)                                                        <-------TEIL    <------NtERF2                                                                <---------DOF5.7(2)  <---------bZIP60(1)                --------->MYB52(2)                          <---------At5g28300  <---------ANAC46                  <-------TEIL --------->YAB1                 <-----------GT1  --------->bZIP60(1)    --------->ANAC58        <---------ICU4              --------->ANAC58  <---------ANAC58       --------->ANAC58       --------->ICU4               --------->ANAC55(2)  <---------ANAC58     ---------->DOF2       <---------AHL20(2)              --------->ANAC58 <-----------------------TaNAC69(2)<---------MYB52(1)                        --------->ANAC46 -NtERF2    --------->ARR11(3)   <---------DEAR3(2)<---------YAB1       <---------ARR14(2) --ETT(2)   <---------ARR11(3)<---------MYB52(1)<---------YAB1          --------->ARR14(2)      <---- ->ETT(2)  xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------YAB1  <----------DOF2 --------->ANAC55(1)<---- ------->ALFIN1     --------->DREB2C(2)      --------->AHL20(2) <-----------GT1--------->DOF5.7(2)   agtggcgtcaagaagatcaagaccgacaagcccttcggttcgtttatattattattacacagacttttacaacatatacacgttaccgttcatgtatagc  29741200                                                                     ------>NtERF2                                                                     ----------->RAV1(1)                                                                   --------->SPL7                                                                  ------>NtERF2                                                                 --------->DEAR3(1)                                                               ------>NtERF2                                                               <---------ATERF1(1)                                                              --------->ANAC58                                                              --------->ANAC46                                                              --------->DEAR3(1)                                                              --------->ANAC58                                                             --------->ATERF1(1)                                                            <---------ATERF1(1)                                                           --------->DEAR3(1)                                                           ----------->HVH21                                                           <---------DEAR3(1)                                                          --------->ATERF1(1)                                                          <------NtERF2                                                         <---------ATERF1(1)                                     <---------ZAT2      ------>NtERF2                                     <------NtERF2       <-----------HVH21                               <---------At5g28300      <---------DEAR3(1)                               --------->RAP2.6(3)      --------->DEAR3(1)                              --------->MYB52(1)        <---------ANAC46                              <-----------GT1          --------->ATERF1(1)                              <---------DOF5.7(2)     <---------ATERF1(1)                     --------->REM1(2)                <---------RAP2.3(1)                <---------ANAC58  xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) --------->LBD16                <---------ANAC46 <-----------TGA1    <---------DEAR3(1)   ---------->DOF2      <---------MYB52(1) <------ZmHOX2a(1) ------->TEIL<------NtERF2--------->ANAC46     <-------GAMYB  --------->ALFIN1 --------->ZAT2 --------->SPL7<---------ATERF1(1) -----ANAC58    --------->ALFIN1 ------->GAMYB    <---------SPL7--------->ATERF1(1) -----ANAC58    <---------ANAC58--------->ANAC46  ----------->HVH21<---------LBD16                  -   ttatttccgttaatcgatgtgtgtgtaggaattaacggcagcatggacttgagggacggcgtcgacgcctccggcagaaagggcaaggtttgtagtaact  29741300                                        <------MYB46(1)                                        <---------DEAR3(2)                               <---------AHL20(2)                               <--------ATHB1                               --------->AHL20(2)                               <---------ICU4                              <---------YAB1                              --------->ICU4                            <---------ICU4                            --------->YAB1                          <---------TOE1(2)                         --------->YAB1 <------MYB83     <---------ANAC55(1)             <-------TEIL                    <----------DOF2    <---------MYB46(3)----------->GT1--------->ARR14(2)                <---------ARR11(3)  <------MYB46(1)      <---------ANAC58            <---------------AtSPL8                --------->ARR11(3)  <------MYB83         <---------ANAC55(2)         <---------------AtSPL3                <-----------GT1--------->ATHB51          <---------ANAC46--------->CCA1(2)        ---        ----------->GT1 <---------AHL20(2)               <---------ANAC58--------->ARR14(1)       ---     --------->ALFIN1  --------->AHL20(2)              <---------TGA2(2)<---------ARR14(2)   -------- -------->MYB52(1)  ------>ZmHOX2a(1) <---------ANAC46----------->TGA1  --------->ARR11(1)   <-------   gaaaacggtgttgtttaatatcctttttaataataatttggtgggttctctaaacaatgacgtataatcgcagggatacggtgtttacaagtacgtcgac  29741400  Previous    Next  AGI:  At1g79040.1    Description:  PSBR (photosystem II subunit R). Identical to Photosystem II 10 kDa polypeptide, chloroplast precursor (PSBR) [Arabidopsis Thaliana] (GB:P27202); similar to Photosystem II 10 kDa polypeptide, chloroplast precursor (GB:P49108); contains InterPro domain Photosystem II protein PsbR; (InterPro:IPR006814) Range:  from: 29740909    to: 29741902    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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