Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              ------>ZmHOX2a(1)                                         <---------AHL20(2)       --------->HSFB2a(1)                                            --------->ATHB12    --------->YAB1      <---------KAN4(2)               <---------ZAT14                <---------AHL20(2)  <---------ATHB12 ------>TOE2(3)                       --------->ZAT14         ------>ZmHOX2a(2)  ----------->GT1 >AGL15<---------HSFB2a(1)        --------->YAB1   <-----------GT1   --------->AHL20(2)--------->WOX13(1)   ccttagagaatgtcctgctaaaaaaacttggtgtaatcagagaactgaaattgtcacaatttgatctcatattaattgggagatagtatcaatcatagta  29729100              <---------AHL20(2)                                        <---------ALFIN1              --------->AHL20(2)                                      --------->ANAC46          --------->AHL20(2)                            --------->TOE2(3)                        ----        ----------->GT1                          --------->YAB1    <---------At5g28300       --------   ---------->DOF2              ----------------->AGL1  --------->TOE1(3)  <---------ATHB12 --------- <---------MYB52(2)----------------->AGL2       <---------YAB1    <-----------GT1         <----------   tcaactaaagaagtaattaaaccccaaaatagttaccaaaaatgaacaaaatgataaaccctaaaaattcacccccaatctttgaattgatacaaaaagg  29729200                                           <---------MYB52(1)                                       --------->MYB52(1)                                       ------>MYB46(1)                    --------->ZAT14                                       ------>MYB83                       --------->ZAT18                                       -------->P                <---------WOX13(1)                                      --------->MYB52(1)      <---------YAB1                      ---                                      --------->MYB55(1)      --------->ICU4                   <-----                           ----------->HVH21 <---------MYB46(3)--------->ATHB12             --------- ------->GT1      ----------->GT1    --------->MYB46(3)    <---------TOE1(1)          =============== ->DAG2          --------->ALFIN1    --------->AtMYB61     <---------TOE2(1)          ---------->DOF2 ->DOF2   ----------->RAV1(1) <---------ANAC46       <---------GLK1(2)    --------->At4g35610  ------ -----AGL15  ---------->DOF2 <---------LBD16<--------P  <---------SPL7    <---------ZAT14  <---------DEAR3(1)   agtaaaatttggcaacaaagtggagaaatttgacggagaccaaccggttgctacagattgtacgatgattggagtctgcacaatgaaacaaagccggtga  29729300                 --------->ZAT18                 --------->ZAT14                 <---------ZAT14             <-------MYC3             ------->MYC4             ------->PIF4             <-------MYC2             <-------MYC4             <-------PIF4             ------->MYC3             ------->PIF5             ------->MYC2             <-------PIF5            <---------TGA1a            ============================bZIP_DOF            --------->O2            --------->TGA1a            <---------O2            <---------ANAC46            <---------ANAC55(2)            --------->ANAC55(2)           ------------>OsbHLH66                          --------->At4g35610         <------NtERF2                                --------->ANAC58    <---------ARR14(2)   >>>>>>>>>>MYB80             --------->WOX13(1) ------>MYB46(3) <---------ZAT18                   <------ZmHOX2a(2)     ---------->DOF2 ----ZAT14<------------OsbHLH66                  <------ZmHOX2a(1)     --------->LBD16  <---------ATHB12 >LBD16<---------RAP2.6(2)           <-----------HVH21--------->ANAC58<---------HSFB2a(2)  ---------- =====================bZIP_DOF--------->DAG2   --------->MYB59        --------->HSFB2a(2)--------->YAB1 --->ZAT14<---------ALFIN1   ---------->DOF2 --------->ICU4 <---------ETT(2)      ----------->GT1   acagccgatgcggcacgtgtgaactcaaaccaaaagcgaggtcagaaattaggatcaagcagtagacaaatcccagaaagaagatggcaaatcaaaagcg  29729400                           --------->HSFB2a(1)                      --------->LBD16                     <---------LBD16                    <---------LBD16       <------MYB46(1)                  <---------ARR14(2)      <------MYB83                  --------->ARR14(2)     <---------TOE1(2)               <---------------AGL15    <--------P              ----------------->AGL1 <----------DOF2              =======================================================================================              ----------------->AG  <---------ANAC46             ----------------->AGL1 <---------ANAC58--------->ARR14(2)                        -------             <-----------------AGL1 <---------ANAC58<---------ARR14(2)                  <---------ARR14(2)      <---------TOE2(3)    <---------HSFB2a(1)--------->MYB52(2)                        --------->ARR14(2) >DOF2<---------TOE1(3)   <---------KAN4(2)  <-------TEIL                           <---------LBD16   aatgaattcaggttttcccaaatcgggggatgttctgggcttgtaggttcgtcgaatttgggatttttctttggactcgctcgatttggggattttgttt  29729500                                                                               <---------At4g35610                         ---------->ID1                                       <-----------GT1                         <---------MYB52(1)                              <---------AHL20(2)              *TSS  <---------ARR14(2)                                  <---------AHL20(2)           <----------DOF2                                              --------->AHL20(2)          <---------------AGL15                                       --------->TOE2(3)         ========================================MADS_MADS          <---------AHL20(1)         <-----------------AGL1                                     --------->AHL20(1)          <----      <----------DOF2 <-------TEIL         <-----------GT1          --------->AHL20(2)         ------   <-----------GT1  --------->ARR14(2)  ----------->GT1             <---------AHL20(2)        <------ ==========================MADS_MADS    --------->YAB1           --------->AHL20(2)           <------ --->ID1 <-----------------AG    --------------->AGL15           <---------AHL20(2)        <---------YAB1   ttttttttctttcctttctagggattcgttgtttttctaaaatagtaactcaacaaaaaatacacattaaaatattaattttgctgtctgaatacgataa  29729600                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                  ---                   <---------AHL20(2)                                                           <----       ------->GAMYB                                                                            -----       --------->AtMYB61                                                                        -----      --------->MYB46(3)                                                                      -------     --------->ANAC58                                                                       <--------     --------->ANAC58                                           <------ZmHOX2a(1)           <--------   <------NtERF2  <---------AHL20(2)                            ============================HOX2a_HOX2a --------->ANAC46 --------->AHL20(2)       <---------YAB1      <---------YAB1          ------>ZmHOX2a(1) --------CBF----------->GT1           --------->YAB1       <---------GLK1(2)         ------>ZmHOX2a(2) --->ATHB12--------->DAG2           --------->ANAC58 ----------->HVH21             <---------ARR11(3) ---ATHB51---------->DOF2           --------->ANAC58------>ZmHOX2a(2)     --------->YAB1<-----------HVH21 ---YAB1 ---------->DOF2       <----------ID1       ===================HOX2a_HOX2a --------->ARR11(3)   ttggcgcaaccaaaaggcaaataaatgaaaaaatcgacaagcattatgtttagatcggacagattaggataaactataagcatatgatcctgtccgtccg  29729700 ------->LBD16 ------->At5g28300 ------>RAP2.6(2) -------ANAC46                                                        <---------ANAC58 -------->GT1                                                         <---------ANAC58              < ------>RAP2.3(2)                 <------ZmHOX2a(2)        <-----------GT1                       >>>> --NtERF2                     --------->SPL7             --------->CCA1(2)                       >>>> ---->LBD16                 <-----------HVH21           <---------ARR11(3)                       >>>> ->NtERF2            ------>ZmHOX2a(2)                  <---------ARR14(2)                       <--- -->SPL7           <---------ARR11(3)                   --------->ARR14(2)                      ----- ---HVH21          --------->ARR11(3)                   --------->ARR11(3)                      ----- -SPL7    ---------->DOF2   <---------SPL7  --------->TOE2(3)      <---------CCA1(2)            -----   ccgtaaaaaaaaaaaagacatgatcttgtccgtccgatcaaatatttcttaatgtacagatatacccttgtagcttaagacttatctgttttcagtcttt  29729800      <---------AHL20(2)                      --------->GLK1(1)     <---------AHL20(2)                    --------->LBD16     --------->AHL20(2)                   --------->ANAC46  ------>MYB46(1)                        <---------LBD16  ------>MYB83                          --------->MYB52(1)                  <-------GAMYB ---------MYB59                        <-----------GT1                     <------MYB46(1) >>>>>>WRKY18                       ------>MYB83                           --------->MYB52(2) >>>>>>WRKY40                       ------>MYB46(1)                        <------MYB83 >>>>>>WRKY62                     <---------MYB111(1)                      <---------MYB46(3) ------WRKY18(1)                 --------->ANAC55(1)                       ----------->GT1         -- ---->WRKY45                     --------->ANAC55(2)            ---------->DOF2   --------->ANAC46 -- ---->WRKY12  <----------DOF2    --------->ANAC46       ----------->GT1  <--------P                <- ---->WRKY38(1)                  <---------ANAC55(2)  ------->TEIL   <-----------RAV1(2)         ----   gaccaaattaaatgctctttctccgaaccgaaaacacctaataaccggaactcatgaaccgaaaatcaaagtcaggttggttacaaacaattcaattaca  29729900            <XXXXXXXXXXXXXXXXXXXXMIR406                                             --------->LBD16      --------->GLK1(2)                                                            --------->LBD16      <---------ARR14(2)                                                           <---------LBD16      --------->ARR11(3)                      ---------->ID1          ------->GAMYB--------->ANAC46      <---------ARR11(3)                  ------>ZmHOX2a(2)          --------->ANAC58      --------->ARR14(2)                <---------ARR11(3)           --------->ANAC58 ------->At4g35610              --------->ANAC58                   --------->MYB52(1)--------->LBD16 ------->ZAT14                  --------->ANAC46                --------->ANAC58  <---------LBD16 --------ZAT14                  --------->ANAC58<----------DOF2 --------->ANAC46  --------->LBD16 ----->ANAC46     ---------->DOF2       --------->ARR11(3)      --------->ANAC58 <---------LBD16   cagcacaaaatctggattacaaaagagttttcacacgcatatgatctcgtctttattttcaaacagaagcaacgaaaatgtttccccgggaaaaacaagt  29730000  Previous    Next  AGI:  At1g79000.1    Description:  HAC1 (P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2 GENE); H3/H4 histone acetyltransferase/ transcription cofactor. Identical to Histone acetyltransferase HAC1 (HAC1) [Arabidopsis Thaliana] (GB:Q9C5X9;GB:O64548); similar to HAC12 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 12), H3/H4 histone acetyltransferase/ transcription cofactor [Arabidopsis thaliana] (TAIR:AT1G16710.1); similar to ATHPCAT2/HAC4 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 4), histone acetyltransferase [Arabidopsis thaliana] (TAIR:AT1G55970.1); similar to ATHPCAT4/HAC5 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 5), H3/H4 histone acetyltransferase/ histone acetyltransfe Range:  from: 29721243    to: 29729514    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g79010.1    Description:  NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY). Identical to NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial precursor (TYKY) [Arabidopsis Thaliana] (GB:Q42599); similar to ATMLO14 (ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 14), NADH dehydrogenase (ubiquinone) [Arabidopsis thaliana] (TAIR:AT1G16700.1); similar to NADH:ubiquinone oxidoreductase-like [Solanum tuberosum] (GB:ABA81853.1); contains InterPro domain NADH-quinone oxidoreductase, chain I; (InterPro:IPR010226); contains InterPro domain 4Fe-4S ferredoxin, iron-sulphur binding; (InterPro:IPR001450); contains InterPro domain Alpha-helical fe Range:  from: 29729772    to: 29731921    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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