Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             <---------ZAT14       --------->ETT(2)                                 <---------ANAC46    <------MYB46(1)                               <---------DEAR3(1)    <------MYB83                                ------>NtERF2   --------->MYB59                              --------->LBD16   <---------MYB46(3)                         <---------LBD16<---------ANAC46    <---------MYB52(1)   <---------AtMYB61                     <---------GLK1(2) --------->ZAT14       ---------->ID1 <---------MYB52(1)                    --------->ICU4 --------->ZAT14 <---------YAB1 -------GT1 --------->ATHB12           <---------YAB1 <---------ZAT14<---------AHL20(1)   tcggtttggtcgatcgattgagttttagctctgtgagcgtcatgattctccggctgtgctgtgctgtgtaatatgtttgattcgttgttttcatgttttt  29669700                                                  ------->TEIL                <-------TEIL                     <-----------GT1            <---------------AtSPL3             <---------REM1(1)            <---------TOE2(3)                 <---------------AtSPL8       <---------AHL20(2)            --------->DAG2                    --------------->AtSPL8      --------->AHL20(2)      <--            <---------------AtSPL8            --------------->AtSPL3      <---------AHL20(2)      ---            --------->MYB59            <---------AHL20(2)             <---------AHL20(2)       <-----     ----------->GT1               <---------AHL20(2)              ----------->GT1            <------     <---------MYB46(3)           <---------AHL20(1)         --------->AHL20(2)          --------->ARR11(3)   atttcggtggtaataaggtacagccaatgtgagtcatatatttgatttgatgtaccctctcaattcaataagttaattttatgtccaaaaacatattggg  29669800                                                                  ----------->GT1                                                                  <---------ANAC46                                                                  <---------ZAT6                                                               <---------AtMYB61                                                             <---------ANAC46                                                             <------MYB46(1)                                                            --------->MYB111(2)                                                            --------->MYB111(1)                                                       <---------TOE2(3)                                         <---------AHL20(2) <---------AtMYB61       <---------YAB1        <--------HAHB4         <---------AHL20(2)    <---------MYB52(1)       <---------ICU4      --------------->AGL15   <-------GAMYB    <---------ICU4      <---------AHL20(2)  --------->MYB46(2)  ----------->GT1   <---------AHL20(2)  <---------AHL20(1)  <---------MYB46(3) -------ARR14(2)   --------->AHL20(2)   --------->AHL20(2)  --------->MYB55(2)                 ------ ------>ARR14(2) --------->YAB1        --------->ICU4  <---------TOE1(3)            --------->At5g28300 ----ANAC46     <---------YAB1    ----------->GT1<---------------AGL15  --------->YAB1        ------- ---LBD16     --------->YAB1<---------YAB1    <-----------GT1<------MYB83     <---------AHL20(2)<----   gataccgttatttttctcataataaataccatcattttgtaatttttttttcattttatggtttggtggtgtaaacataataaatcggtaattgaagagg  29669900                               <---------ICU4                              --------->ICU4                 --------->AHL20(2)                                 --------->AHL20(2)                 --------->AHL20(1)                                 <---------AHL20(2)                 <---------AHL20(2)                                --------->AHL20(1)                --------->AHL20(2)                                 <---------AHL20(1)   <---------AHL20(2)   <---------------AtSPL8                     <---------AHL20(2)  --------->AHL20(2)    --------------->AtSPL8                     --------->AHL20(2)      ------>ZmHOX2a(2) ----->GT1      <---------AHL20(2)                               ------->TEIL            --------->ARR14(2) ---->GT1      <---------AHL20(1)                      ----------->HVH21     --------->ANAC58 --ZmHOX2a(1)  --------->AHL20(2)                    --------->CCA1(2)       --------->ANAC58       -   aaaatttaaaatcacaaaataatttagttgtactaatttcatgagcaagtctgtgatatgacccatgaatttatttagcacgaccgagttggatcgacga  29670000                                                                                                    -                                                                                                  ---                                                                                                  ---                                                                                                 ----                                              <-----------HVH21                                  ----                                       <---------GLK1(1)                            --------->ZAT18 -                                       <----------DOF2                              <---------ZAT18 <                                      <---------ANAC58                             <---------ANAC58 -                            <-----------------AGL1                                 <---------ANAC58--                      ----------->RAV1(1)    --------->ANAC46                      <---------ANAC46<-               ---------->DOF2   <------------CBF <---------ANAC58               --------->SPL7------           <------------CBF ----------------->AGL2<---------ANAC58             <---------SPL7  <-----         --------->ICU4  ------->GAMYB<---------ANAC58 <----------DOF2      ------>NtERF2    -------- -------->WOX13(1)    --------->MYB52(1)     --------->O2                ------>ZmHOX2a(1)  >>>>>>>>>TBF1   gtcaattagtaagaattgaaagcccaacaggcccaaattggctttccccgtcgcgttctttctctcttcgtcttcctcggccgtagcgcgcgaagaagaa  29670100        --------->YAB1   <------NtERF2  ------>NtERF2  --------->LBD16  <---------RAP2.6(3) --------->ATERF1(2) <---------ATERF1(2) --------->RRTF1(3) --------->RAP2.3(2) --------->RRTF1(2) --------->DREB2C(2) --------->RAP2.6(2) --------->RAP2.3(3)                                                                                < --------->DEAR3(1)                                                                                 < -------->ERF1                                                                                  <---- ------>DEAR3(1)                                                                             <------- ---->GAMYB*TSS                                                                              -------- ----->MYB46(3)                                                                              <------- ----->DEAR3(2)                                                                            <---------AHL20(2) -------->RAP2.3(1)                                                                 <---------MYB52(1) ---------LBD16                                                                    <-----------HVH21- -------->ATERF1(1)                           <---------YAB1                      <---------ANAC58--- ------->MYB52(1)                           <---------At4g35610        --------->ANAC58    <--------- --------ATERF1(1)                      <---------MYB52(1)             --------->ANAC58 --------->ARR14(2) --->ARR14(2)                          --------->LBD16      ------->MYC3          <---------ANAC58--- ----ARR14(2)                        <---------LBD16        <-------MYC3      <---------ANAC58 ------ --->ARR10<---------At4g35610       ------>ZmHOX2a(1)    <---------ALFIN1     <---------ANAC58 ------   ccgccggcattcagcattctgaccctagacacagagtcctccggtcttctgataaacccccatgtggaaggccaagacatgcttccgtcagatttacttg  29670200                                           <---------DEAR3(1)                                      ------>NtERF2                                     --------->DEAR3(1)                                     --------->RAP2.3(3)                                     --------->RAP2.3(2)                                    --------->DEAR4(2)                                    <------NtERF2                                    --------->RAP2.3(1)                                    --------->ATERF1(1)                                    --------->ORA47(2)                                   <---------ATERF1(1)                                   --------->ABI4(1)                                   ------>NtERF2                                  --------->ATERF1(2)                                  --------->RAP2.6(2)                                  --------->DREB2C(2)                                  --------->RRTF1(2)                                 --------->DEAR3(1)                                  --------->RRTF1(3)                               --------->MYB52(1)                                  --------->RAP2.3(2)                             --------->AtMYB61                                  --------->DEAR3(1)                              <---------ALFIN1                                  <---------DEAR3(1)                             <---------ABI4(2)                                  --------->RAP2.3(3)                           --------->TCP16(2)                                 --------->RRTF1(1)                            <---------PCF5                                 --------->ORA47(2)                            --------->PCF2                                 --------->DEAR4(2)                        <---------LBD16                                 --------->ERF1                            --------->TOE1(2) ---------ZAT14                  --------->RAP2.6(1)           --------->MYB52(1)--------->MYB46(3) ---------SPL7                   --------->RAP2.3(1)        --------->ANAC58   <---------TCP16(1) -----WRKY18(1)                  --------->ATERF1(1)        --------->ANAC58 --------->TOE1(1) --ANAC58                       --------->LBD16        ----------->HVH21  --------->ZAT2 ->ANAC55(2)  <------NtERF2     --------->ABI4(1)    <---------O2         <---------TGA1a --ANAC58     <---------SPL7    --------->At4g35610  --------->ANAC46     ----------->RAV1(2)    ---- -------->ZAT18                 <---------At4g35610  --------->O2         --------->TGA1a        <--- ------------>AtSPL3            ------>NtERF2     <---------LBD16         --------->O2        <------ZmHOX2a(1) --GT1   --------->ANAC46       <---------ATERF1(1) --------->LBD16       <---------ZAT2    --------- ------------>AtSPL8           --------->DEAR3(1) ------>ZmHOX2a(2)       <---------O2      --------- --->WRKY12  <---------DEAR3(2)--------->ANAC46 --------->ARR14(2)      <---------ALFIN1--------->ANAC58 ----->HVH21<---------DEAR3(1) <---------ALFIN1 <---------ARR14(2)     <---------ZAT18  --------->ANAC58   accgtactaatacggcggtactcgagagtcgctccgccgccgtcttcggtgatccgcgtgacaaacaacgtagcacacctgggaccaccgaagcaaggac  29670300                                                                                                   --                                                                                                  <--                                                                                                  <--                                                                                                 ----                                                                                                 ----                                                                                                 <<<<                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                <----                                                                                               <-----                                                                                             ------>NtERF2                                                                                             --------                                                                        <------NtERF2        <------NtERF2                                                                        --------->ATERF1(1) <--------                                                                        --------->RAP2.3(1) ---------          <---------ZAT2                                               <---------ATERF1(1)  <--------          --------->ZAT2                                               ------>NtERF2        ------>NtERF2          --------->At4g35610                                         <---------DEAR3(1)   --------->ATERF1(2)       --------->TGA2(2)                                              <---------ATERF1(2)  <---------ATERF1(2)      <-----------HVH21   <------NtERF2                               <---------RAP2.3(3)  <---------ANAC46      <-----------TGA1   <---------RAP2.6(3)                          --------->ATERF1(2)  <---------RAP2.6(2)     --------->TGA1a     ------>NtERF2                               --------->SPL7       <------NtERF2     --------->O2       --------->ATERF1(2)                         --------->MYB52(1)    --------->At4g35610     --------->bZIP60(2)--------->RAP2.3(3)                        ----------->TGA1       --------->ATERF1(1)     <---------O2       --------->ANAC46                         --------->At4g35610      <---------DREB2C(1)     --------->bZIP60(1)--------->DEAR3(1)                       <---------ZAT2          <---------ATERF1(1)     <---------bZIP60(1)--------->RAP2.3(2)                      --------->ZAT2          <---------RRTF1(1)     --------->ANAC46   <---------ATERF1(2)                      <---------At4g35610     <---------RAP2.3(1)     --------->ANAC58   --------->RAP2.6(2)                     --------->ARR14(2)      <---------DEAR3(1)     <<<<<<<<<<AtbZIP1 --------->RAP2.3(1)                     <------NtERF2            <---------RRTF1(2)     <---------TGA1a  --------->ZAT2 --------->WRKY18(1)     --------->DEAR3(1)         <---------RRTF1(3)     --------->ANAC58 <---------ATERF1(1)                   <---------LBD16<------NtERF2<---------RAP2.3(2)   <---------ALFIN1   ------>NtERF2 <-----------HVH21     --------->ANAC46------>NtERF2 <---------RAP2.6(2) <-----------HVH21 ----------->RAV1(2)      <---------MYB52(1)--------->LBD16         --------->MYB52(1) ----->AtMYB61 <---------GLK1(1)   --------->LBD16      ---------->DOF2<---------RAP2.3(1)--------->DREB2C(1) ------ALFIN1  --------->GLK1(1)  --------->LBD16      <---------ARR14(2)<---------DEAR3(1)<---------DEAR3(1) >ANAC58  <---------At4g35610    <---------LBD16       --------->ARR14(2)--------->DEAR3(1)--------->DEAR3(1) >ANAC58<-----------RAV1(2)     <---------LBD16----------->RAV1(2) ----------->HVH21-----------------   cactgccacgtcagctgatatccctgccgccatttcccggtcatccattacctggcaaaaacgccggagctgacggcgacgatggagatagcggcggcca  29670400    --------->At4g35610 --------->HVH21 ---------HVH21 ---------TGA1 ----->O2 ----->ANAC58 <<<<<<HY5 ------ANAC55(2) ----->ANAC55(2) ----->ANAC58 ------O2 ----->TGA1a ----->bZIP60(1) ----->ANAC46 ----->bZIP60(2) ------bZIP60(1) ------TGA1a                                   <---------TOE2(3) ----->ANAC55(1)                               --------->DAG2 -------STF1     --------->WRKY18(1)        >>>>>>>>>>GATA-1 ----ALFIN1     <-----------HVH21           >>>>>>>>>>GATA-3 ->ATERF1(1)    <--------ZAP1               >>>>>>>>>>GATA-2 -RAP2.3(1)--------->At4g35610              >>>>>>>>>>GATA-4 >RAP2.6(2)--------->ZAT2                  --------->YAB1                   <---------ANAC58 -ATERF1(1)<---------ZAT2           --------->GLK1(1)                       <---------ANAC58    <---- ------>TaNAC69(2) --------------->AtSPL8 <---------YAB1             ---------->DOF2            -----   cgtcacagctataagctgggtcaagtactattttgaagaaatctatgataaggctattcaaactcatttcacaaagggccttgtgagtgtctctggtata  29670500                                                                                           --------->LBD16                                                                                          <---------ANAC46                                                                                       --------->ANAC46                                                                                     <---------ALFIN1                                  <----------DOF2                                   <-------TEIL                            <---------WOX13(1)           --------->YAB1            --------->CCA1(2) -------GT1               --------->ATHB12              <------ZmHOX2a(2)         <---------ARR14(2) ---->YAB1               <---------AHL20(2)      <----------DOF2                  --------->ARR14(2)   acaatttcattacttctgatcaaatatttgattgagctttgttagactattcttttggatcatcacattgtctaatgaaattcagatacactccgtgaat  29670600  Previous    Next  AGI:  At1g78900.1    Description:  VHA-A; ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism. Identical to Vacuolar ATP synthase catalytic subunit A [Arabidopsis Thaliana] (GB:O23654); similar to ATP synthase beta chain 1, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G08670.1); similar to ATP synthase beta chain 2, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G08690.1); similar to ATP synthase beta chain, mitochondrial, putative [Arabidopsis thaliana] (TAIR:AT5G08680.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41694.1); similar to Vacuolar ATP synthase catalytic subunit A (V-ATPase subunit A) (Vacuolar proton pump subunit alpha) (V Range:  from: 29665077    to: 29669844    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g78910.1    Description:  pseudouridine synthase family protein. similar to pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G19440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41678.1); contains InterPro domain Pseudouridine synthase, conserved site; (InterPro:IPR006224); contains InterPro domain Pseudouridine synthase; (InterPro:IPR006145) Range:  from: 29670111    to: 29672549    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version