Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          --------->CCA1(2)                                                                                       --------->ARR14(2)                                                                                     <---------YAB1         --------->DAG2                                                          <----------DOF2        ---------->DOF2   <---------ANAC58                                      <---------ANAC58  ---   <------NtERF2          <---------ANAC58                                      <---------ANAC58  --- <---------DEAR3(1)       <---------ANAC46      --------->YAB1           ----------->ARR10  <<<<<<<<<   gagttggcgaaaaaggagaccgagaatggcgagagagcataagagaacaatgaaaacatcggagaagagagagagaagagtcgcgttacgatatgcacaa  29664700                         --------->At4g35610                       --------->YAB1                 --------->LBD16                --------->ANAC58           <---------ANAC58           <---------ANAC58     --------->ANAC46 <---------ATHB12                                                    <----------DOF2 -------->GT1   --------->ANAC58                                                    <----------DOF2 ------>YAB1  --------->SPL7                           <---------CCA1(2)           <---------ANAC58 <<<<<<<<LFY<-----------HVH21                 <---------CCA1(2)  <---------ALFIN1  <---------ANAC58<-   tggtaatacacaagcgtcccgctaatcagcaatcccatcgccttccccatttctcccatctctctccccacttcaaaaaaaacttgctttccctttcttc  29664800                                                                                        <---------CCA1(2)                                                                                     --------->LBD16                                                                                 --------->ANAC58                --------->LBD16                                                  --------->ANAC46               --------->LBD16                     ------>NtERF2                 --------->ANAC58             <---------LBD16                     <---------LBD16           --------->GLK1(2)  --------->HSFB2a(2)               <----------DOF2--------->LBD16        --------->ARR14(2)  <---------HSFB2a(2)     --------->MYB52(1)   <-----------GT1          ----------->ARR10        ---- ---------DOF2--------->LBD16       <---------DAG2<---------RAP2.6(2)*TSS <---------GLK1(2) <--------   actttcagaaaatttccccgagaaaacaaaactgatcacttttgtgaattttccggcttgatcagagagagagagagattctcaagccgcatgtctttgt  29664900                                                               <-------MYC2                                                               ------->MYC3                                                               ------->MYC2                                                               <-------MYC3                                                               ------->PIF5                                                               <-------PIF5                                                              <---------O2                                                              --------->O2                         --               --------->ATHB12                               <---------TGA1a            ------>ZmHOX2a(2)            ------>MYB83                                      <---------ANAC58          --------->CCA1(2)            ------>MYB46(1)                                   --------->TGA1a          --------->AGP1           <---------ALFIN1                                   <---------ANAC58         <-----------ARR10          --------->MYB46(3)           ---------->DOF2        --------->ANAC55(2)      <---------ARR11(3)        --------->PCF2              --------->YAB1            <---------bZIP60(2)      --------->ARR14(2)        <---------TCP15(1)         <---------YAB1--------->AHL20(2)       <----------ID1<------ZmHOX2a(2)        <---------ARR14(2)         <---------AHL20(2)         <---------ANAC46         <---------AGP1        <---------TCP20  <---------MYB52(1)     <---------ATHB12        --------->MYB52(1)         <-        ------->TEIL    <---------RAP2.6(3)     --------->AHL20(2)      <-----------GT1<---------ARR14(2)     --------->ANAC46   --------->At5g28300 ------------>CBF  ===========================bZIP_DOF <--   --------->MYB52(1)   <---------SPL7 =================================bZIP_DOF       --------->ARR11(3) ----->WRKY38(1)<------------CBF<---------ARR11(3)            <---------ANAC55(2)     <---------CCA1(2) --DOF2 --------->ARR14(2)      --------->AHL20(1)        <-----------HVH21   ---------->DOF2  ------   tgactaaacggacccacttattgggccgtaagtatatattataaagcccaataaataaactgtcacgtggctattaacgacaaagtccagatctacgcgc  29665000      --------->ZAT14      --------->REM1(2)      <---------ZAT14    --------->ANAC58   <---------ANAC46      --------->ANAC58                                                <---------ALFIN1 <---------ANAC58        --------->ANAC46      <------ZmHOX2a(2)                        --------->MYB46(3) <---------ANAC46     <------ZmHOX2a(2)      --------->At4g35610                 <---------ANAC46 <---------ANAC58    <-----------HVH21     --------->YAB1               --------->ARR11(3) ------->ARR14(2)  --------->LBD16        <---------ATHB12              <---------ARR11(3) --------ARR14(2)<---------LBD16        --------->WOX13(1)         ------------>CBF <-------TEIL -------CCA1(2) --------->MYB52(1)    ------------>CBF           <----------DOF2 <---------ANAC58 --->LBD16      ------->TEIL         --------->TOE2(3)   --------->HSFB2a(2) *TSS<---------ANAC58   gtatcgtgtgtagtcatgtaccggatcactccacgatttcgtcaatcagatcaaaacttctccaactctttcaatatctatctacgtgcatccacctctc  29665100                                               ==============================HOX2a_HOX2a                                               ------>ZmHOX2a(2)                                              --------->GLK1(1)                                             --------->ARR11(3)                                             --------->ARR14(2)                                             <---------ARR11(3)                                             <---------ARR14(2)                                             <---------ARR14(3)                                            --------->GLK1(1)                                            <---------GLK1(1)                   <----------DOF2                                          <------ZmHOX2a(1)                 ---------->ID1                                      <--------P                      <---------DAG2<---------YAB1                        ------>ZmHOX2a(1) =================================HOX2a_HOX2a                        =============================HOX2a_HOX2a      ------>ZmHOX2a(1) --------->AHL20(2)               <---------ALFIN1     <---------MYB46(3)                <----------DOF2  <---------WOX13(1)            <-----------GT1    <---------ZAT14===============================HOX2a_HOX2a<---------AHL20(2)           ----------->HVH21   --------->ZAT14<------ZmHOX2a(2)     ------>ZmHOX2a(2)  <----------DOF2   <<<<<<<<<TBF1        ==============================HOX2a_HOX2a<------------------------ANAC81   tcttcttcttcttgtgaccactcttcctgtctgttcactggttaggagatctctatccctctctctctgatcctttttgtttctttctgatttattgtat  29665200                                                                                     --------->HSFC1(1)                                                                                     <---------HSFB2a(2)                                                                             <------NtERF2                                                                         ------>ZmHOX2a(2)                                                                         ======================HOX2a_HOX2a                                                                        --------->GLK1(1)                                                                        <------ZmHOX2a(2)                                                                        =======================HOX2a_HOX2a                                                                        <---------GLK1(1)                                                                       <-----------ARR10<------ZmHOX2a(1)                                                                       --------->ARR11(3)          <-                                                                       <---------AGP1<---------HSFC1(1)                                                                       --------->ARR14(2) -----------                                                                       <---------ARR14(2) --------->At4g35610                                                                      <---------ARR14(1)=============              --------->TOE1(3)                 <-----------RAV1(1)   <---------CCA1(2) =============              --------->TOE2(3)            <---------YAB1           ------>ZmHOX2a(2)--------->HSFB2a(2)    <----------DOF2                    <---------GLK1(1)            ===========================HOX2a_HOX2a   cgctctctttgaaaaaccttaagagttgtctgattttggcgatttctgatttgttgttgttgttgtttgatcggatctcggcattttctaggaggtgaat  29665300                                                          <------NtERF2                                                         <---------RAP2.6(3)                                                         --------->LBD16                                                         ------>NtERF2                                                        <---------RAP2.6(2)                   <---------ARR14(2)                   --------->ATERF1(2)                   --------->ARR14(2)                   <---------ATERF1(2)                ------>ZmHOX2a(2)                       <---------DEAR3(1)               <------ZmHOX2a(2)                        <---------RAP2.3(3)              <---------ARR14(2)           <---------At4g35610   <---------LBD16              --------->ARR14(2)           --------->At4g35610<----------DOF2  --------->SPL7    <---------AHL20(2)                   <---------WOX13(1)<---------ANAC46<---------At4g35610 --------YAB1<---------SPL7            --------->ATHB12--------->RAP2.6(3) --------->At4g35610 >GT1       xxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ANAC46<------------------SPL14       <------ZmHOX2a(1) =====================HOX2a_HOX2a------->TEIL          <---------LBD16 <------ZmHOX2a(1)<---------HSFB2a(2) ======================HOX2a_HOX2a    <---------YAB1  --------->MYB52(1)---------->DOF2 --------->HSFB2a(2)   tttgatttttttggccgatcggatttgagtttttgaatctctgattgctgagaaaatgccggcgttttacggaggaaagcttacgaccttcgaggacgat  29665400                                                    ------>ZmHOX2a(2)                             ----------->GT1      <---------ARR14(2)                           --------->SPL7         <---------AGP1                          <---------MYB52(1)   <---------TOE1(2)                       <-------TEIL<-----------GT1--------->ARR14(2)                    <---------ANAC58        <---------ANAC58                    <---------ANAC46   ====================HOX2a_HOX2a              <---------YAB1--------->DAG2  <---------ANAC58             <-----------GT1  --------->MYB52(2)   <------ZmHOX2a(1)<---------ANAC58   ------>ZmHOX2a(1)          ---------->ID1        <---------MYB52(1)   gagaaggagagcgagtatggttacgttcgtaaggtattatcctgtttcgttcgatctggtttcaatttgtttttttttctgttttgcgatgttagttttt  29665500                                      --------->ATHB12                                     <---------YAB1                                   <--------P                               <-----------RAV1(2)                             -------->P                         --------->At4g35610                         <---------At4g35610                    ----------->HVH21                ----                       ------>ZmHOX2a(2)           <---------STY1(2)     <---------YAB1         <----                      <---------At4g35610 <------MYB83          <---------YAB1--------->ATHB12 <-----  <---------WOX13(1) --------->ARR14(2)   <------MYB46(1)      ------>ZmHOX2a(2)<---------WOX13(1)  <  <---------ANAC46   <---------ARR14(2)  <---------AtMYB61    <---------At4g35610        <---------MYB52(1)   ggtgatggatagatgaaatagttgatctgcttaccaggtaagattggtgggatagctagatttgatctgatagttatcagtgattgaatcggttgattcc  29665600  Previous    Next  AGI:  At1g78895.1    Description:  similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G16830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41680.1) Range:  from: 29663009    to: 29664869    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g78900.1    Description:  VHA-A; ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism. Identical to Vacuolar ATP synthase catalytic subunit A [Arabidopsis Thaliana] (GB:O23654); similar to ATP synthase beta chain 1, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G08670.1); similar to ATP synthase beta chain 2, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G08690.1); similar to ATP synthase beta chain, mitochondrial, putative [Arabidopsis thaliana] (TAIR:AT5G08680.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41694.1); similar to Vacuolar ATP synthase catalytic subunit A (V-ATPase subunit A) (Vacuolar proton pump subunit alpha) (V Range:  from: 29665077    to: 29669844    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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