Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                <------ZmHOX2a(2)                                             --------->ARR14(2)                                    --                                             <---------ARR14(2)                                    -- --------->ANAC46                --------->GLK1(1)             --------->ARR14(2)           --------- --------->ANAC58           --------->At4g35610                <---------ARR14(2)           <-------- --------->ANAC58           <---------At4g35610------>ZmHOX2a(2)   --------->LBD16      ---------->DOF2   tagaagcaatttcaatttcaaatgcgattgagcagaaatcgaacacagatcgccatgtctaacaaaatccccaaatcacagaaactaagaaaaagagctt  29660400   --------->ANAC58                                       <---------ICU4   --------->ANAC58                                       --------->YAB1  <---------------AtSPL8        <---------MYB59          --------->ICU4 ------->ANAC58                 --------->TOE2(3)      <---------ICU4            --------->ARR14(2) ------->ANAC58                 --------->TOE1(3)----------->GT1  <------ZmHOX2a(1)            ====== >ARR11(3)         --------->At4g35610  --------->LBD16--------->YAB1            <---------ARR14(2) -ARR11(3) ---------->DOF2     <---------ANAC55(2)    --------->ICU4<----------ID1             ------   gaagcaagtaccaaaacgcgaagctaaaacaatacctaaacccccaaaatgaagtaaaaatgatcacaggaagacaaaaacccaatctgagaaaacaaaa  29660500                   --------->TOE1(2)                  --------->At4g35610                  ----------->RAV1(2)                  =====================MYC_MYB                  <---------ZAT2                  <---------At4g35610                  --------->ZAT2                 ------->TEIL           --------->ARR14(2)           <---------ARR14(2)         ----------->ARR10        <------NtERF2       ------>NtERF2      --------->DEAR3(1)                   <---------ANAC46      <---------DEAR3(1)              <---------At4g35610      <---------ANAC46                --------->At4g35610     <------NtERF2--------->TGA1a     --------->HSFB2a(1)                                   ---------     --------->ATERF1(1)              <---------HSFB2a(1)                                   ---------    <---------RAP2.3(1)               --------->HSFC1(2)                     --------->ANAC58   -----    <---------ATERF1(1)          <---------REM1(1)            ---------->DOF2--------->ANAC58 -------   <---------DEAR3(1)          <-------GAMYB--------->LBD16 --------->CCA1(2)<---------TOE2(3)<------ ===========================bZIP_DOF  <---------HSFC1(2)------>NtERF2     <---------ATHB12  <-------- ---->DOF2<---------DEAR3(2)  --------->ALFIN1      <----------ID1      --------->WOX13(1)  <--------   agaagacggcgtcgattcgcacctgagagagtgtgttgtaagcttccgagtaaaacgccgagataaaagaaaaacaatcaaggaaaacagttggagctgt  29660600                                                         --------->DOF5.7(2)                                                         <---------MYB52(1)                                                        <-------GAMYB                                             <---------ARR11(3)                                            --------->GLK1(1)                             <---------ALFIN1--------->ARR11(3)                           ----------->RAV1(1)<------ZmHOX2a(2)                                   ---  ----------->HVH21     --------->ANAC58    <---------GLK1(1)                                    <--- >ZAT2                  --------->ANAC58   ----------->ARR10                                    <---- >At4g35610         --------->ANAC58   --------->ZAT2   <-----------HVH21                       ----- ---->ALFIN1        --------->ANAC58   <---------At4g35610  <---------At4g35610                 ----- -->ALFIN1        --------->MYB52(1)   --------->At4g35610  --------->At4g35610                 <---- -----RAV1(1)  --------->ANAC46--------->ANAC58     <---------ARR14(2)                       <XXXXXXX -ZAT2         --------->ANAC58--------->ANAC46     --------->ARR14(2)                     <---------ANAC46 -At4g35610    --------->ANAC58--------->ANAC58------>ZmHOX2a(2)                        <---------MYB52(1)   gggagtgacagtagaagacgaaacggaagcaacactcaagtagctgagatcccatttccgttagctctcactctctctctatctatctccgtcttgtgga  29660700                                   <-------GAMYB                                  <---------ANAC58                       ------------>AtMYB77                     --------->LBD16                    --------->RRTF1(2)                    --------->ANAC58                    --------->RAP2.6(2)                    --------->ANAC46                    --------->RAP2.3(2)         <---------GLK1(1)        <---------ANAC58         --------->GLK1(1)        <---------ANAC46         <------ZmHOX2a(2)       <-------TEIL        --------->ARR11(3)    <------MYB83        <---------ARR11(3)    <------MYB46(1)                                                <-------        <---------ARR14(3)   --------->ALFIN1                                              <---------RVE1(1)   <------ZmHOX2a(2)--------->RAP2.3(3)                                                    <---------CCA1(1) --->ZmHOX2a(2)     --------->ANAC58                                                      --------->ARR11(3) ---ZmHOX2a(2)     --------->RAP2.3(1)                                                    <---------ARR11(3) -----PCF2------>ZmHOX2a(2)  <---------MYB46(3)                                      --------->ALFIN1 ---->ARR14(2)    --------->At4g35610                              <----------DOF2<---------DEAR3(1) ---->TCP20  <----------DOF2 --------->MYB111(1)                   <---------DAG2--------->ZAT14 -----ARR14(2)    <---------At4g35610  ---------->ID1      XXXXXXXXXXXXXXXXXXXX>MIR773  ----------->ARR10 XXXXXXXXXXXXXMIR851-5P----------->RAV1(1)                ------>ZmHOX2a(1)      <---------ZAT14   tcccgatcgagatctctttgagccgcaacagttggtgcgttgtcgctctctctctctctcctcttccaacttttttctctcagagcggtggagatttttt  29660800                   ---------->DOF2                  <------ZmHOX2a(1)                <---------TOE2(3)            ------>MYB83            ------>MYB46(1)            ----------->RAV1(2)                                          ----------->GT1          --------->AtMYB61                                            <---------WOX13(1)          ------->GAMYB                                               <------------CBF         --------->MYB46(3)                                         <---------AHL20(2)         <---------MYB52(2)                                        <---------AHL20(1)         <---------MYB55(2)                                        --------->AHL20(1)        --------->ANAC58  --------->DAG2              ---------->ID1--------->AHL20(2)             --        --------->ANAC58 ---------->DOF2     <----------DOF2       <---------AHL20(2)             <-- --AHL20(2)--------->MYB52(1)            <----------DOF2           --------->AHL20(2)          ------   ttgtttggacaaccaactgaggaaagaaaaagtgaagaacacactttcttttttttgtctctgtccaaatttaattggtaaaaagtttgagagagttttg  29660900                                                                                                 <---                                                                                          --------->AHL20(2)                                                                                          <---------AHL20(1)                                                                                          <---------AHL20(2)                                                                                          --------->AHL20(1)                                                                                          <---------ARR11(3)                                   <-----------GT1                                   --------->AHL20(2)                                -------->HAHB4                             --------->ANAC55(2)  <----                                --------->YAB1                       <---------ARR11(3)--------->AHL20(2)                                <---------ICU4                       --------->ARR11(3)<---------AHL20(2)                                <--------HAHB4                      --------->GLK1(1)<---------AHL20(2)                               <---------ATHB51                     <---------GLK1(1)<---------YAB1                               <---------YAB1                     --------->YAB1    --------->TOE2(3)                               --------->ICU4                    <---------YAB1     --------->YAB1                            <---------YAB1                     --------->YAB1     --------->AHL20(1)                          ----------->GT1                      <---------ICU4    --------->AHL20(2) -     ----------->GT1    <------------CBF                      <---------ATHB51   --------->YAB1<----- ---------->CBF    ----------->GT1<---------YAB1              <---------ATHB12------>MYB83--------->ARR11(3) ---------GT1  <---------TOE2(3)-------->ATHB1                --------->ICU4<---------MYB59<---------AHL20(2) ----->GT1    --------->MYB52(1)--------->ATHB51            --------->WOX13(1)------>MYB46(1)<-------   ttacaatgtgttaaactaagggtgtatattgtaattattactaagttggagcattttcttatcaattatgatatctcacctaataatattaatatatttt  29661000                                                                      <------MYB46(1)                                                                      <------MYB83                                                                      <---------ANAC58                                                              <XXXXXXXXXXXXXXXXXXXXXXXMIR405A/B/D                                                         <---------ALFIN1                                                        <------NtERF2<------MYB83                                                        ----------------->AGL3                                                        <-----------------AGL3                                                       ------>NtERF2 <---------MYB46(3)           <--                                                      <---------TCP15(1)                         <---                                                      <---------TCP20--------->MYB59             ----                                                      <---------TCP16(1)                        <----     --------->AHL20(2)                               --------->PCF2 <------MYB46(1)            ----- --------->AHL20(2)                                   --------->PCF5--------->ALFIN1            ----- <---------AHL20(2)                                  ------>NtERF2 <<<<<<<<<MYB98               <---- ------AHL20(2)                                     <---------ATERF1(1)         <-----------RAV1(2) -----YAB1----------->GT1                           --------->LBD16<--------P <-----------HVH21------ -------->AHL20(2)                                  ------>NtERF2 <---------ANAC58--------->At4g35610 ----AHL20(2)              <---------ANAC58        <---------RAP2.6(2)<---------ANAC58    ---------->DOF2 --AHL20(2)                <---------ANAC58       <---------LBD16 <---------ANAC58<---------At4g35610   tatttaataaactagtgaaattggttattgcctattggattatatggtgttttccggccccacttatgggttgggtccaacttcaggtgactaaaaggcc  29661100                  <---------ZAT18       --------->ZAT18       <---------ZAT14       --------->ZAT14       <---------ZAT18    <---------ANAC46    <---------ANAC58    <---------ANAC58                                                                       <---------AHL20(2)   --------->ATHB12                                                                       <---------AHL20(1) ----NtERF2       --------->ZAT18                                                         <---------AHL20(2) ------RAP2.6(3) --------->PCF5                                                           --------->AHL20(2) -->NtERF2 --------->ALFIN1  --------->ARR14(2)                                   <---------ANAC46 -----RAP2.6(2) ----------->TCP11(1)                                              <---------ZAT6 ---->ATERF1(2) <------NtERF2<---------ARR14(2)                  --------->YAB1   ----------->GT1<--- ---->RAP2.6(2) --------->PCF2                     <----------DOF2            <---------ZAT14  ------ -----ATERF1(2) <---------PCF5                  --------->ARR11(3)            --------->ZAT14 <------ --->RAP2.6(3) <-----------TCP11(1)             <---------ARR11(3)     --------->ZAT6 <---------AHL20(2)   ggccttgagtggactggtggcccactagacgaataggctcttgtttttgagttctttgattcttcaatcttcatcactagagtagtgtataatttttttc  29661200                                                                        >>>>>>>>>ARR1                                                                        >>>>>>>>>ARR2                               --------->ZAT14                         --------->ATHB12   <----------DOF2   <---------ANAC58                                 <---------YAB1 -------DOF2         <---------ANAC58                           <----------DOF2 ---->ID1            <---------ANAC46                     <---------ARR14(2) -----GT1 --------->ANAC46     <---------ZAT14            --------->ARR14(2)   tttttcttttaaacaccagtatggcttaaaaactacacagattggatttttggacatcagtatatgctttgtatgattgtgtctcatgttgttttatact  29661300  Previous    Next  AGI:  At1g78880.1    Description:  balbiani ring 1-related / BR1-related. similar to merozoite surface protein-related [Arabidopsis thaliana] (TAIR:AT1G16860.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82086.1); similar to Os08g0230200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061297.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23138.1); contains domain PTHR10420 (PTHR10420); contains domain PTHR10420:SF18 (PTHR10420:SF18) Range:  from: 29657526    to: 29660842    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g78882.1    Description:  CPuORF56 (Conserved peptide upstream open reading frame 56) Range:  from: 29657526    to: 29660842    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version