Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       --------->AHL20(2)        ---------->DOF2       <---------AHL20(2)   ----------->GT1 ----->ARR14(2)      <---------AHL20(2) ------ARR14(2)     --------->YAB1     --------->YAB1 -----CCA1(2)      <---------YAB1      <---------ICU4 -----GLK1(1)    --------->YAB1       <---------YAB1                                      ------>ZmHOX2a(2) -->ANAC55(2)    <--------HAHB4      --------->ARR11(3)               ----------->TGA1    ----------- ---ANAC55(2)   <---------YAB1       <---------ARR11(3)    <---------WOX13(1)           <---------ARR11(3)   atcccatattaaaagactattattaaaatatagtaagaatatcattacaaatacaaattcgattgctatctaatgacgaaaatgaccctagatcgtaaat  29554100                                                                             --------->DEAR3(2)                                      --------->ANAC58                       --------->MYB46(3)                                      --------->ANAC55(2)                    <------------AtMYB77                                  ------>MYB83                       <---------ZAT14               --                                  ------>MYB46(1)                    --------->ZAT14               --                                 --------->MYB55(1)             --------->ZAT18                  ----                                 ----------->HVH21             --------->ANAC58                  <---                                <---------MYB46(2)             --------->ANAC58                  ----                                <---------MYB52(2)             --------->ANAC46                  <---                                <---------MYB111(1)          ---------->DOF2-------->P          -----                                <---------MYB59              <---------DOF5.7(2)    <---------MYB52(1)                               --------->ANAC55(2)          --------->ARR14(2) <-----------HVH21<----                               <---------ANAC55(2)          <---------ARR14(2)--------->DEAR3(1)-----                         <-------MYC3 --------->ANAC58     --------->DOF5.7(2)------->GAMYB <--------                      <---------ALFIN1<---------ANAC55(2) --------->TOE2(3) ------>MYB83  <----------                    ----------->RAV1(1)                  --------->ANAC58   ------>MYB46(1) <-------- >GT1 <---------HSFB2a(2)------->MYC3 --------->ANAC55(1)--------->ANAC58  --------->MYB52(1)  ------   gaaaggtttgagaagttgagagccacacatggtacctaacacgtataccacaatcgcaaacgtaaacgcactgtagccaaccgtcccttgttttacttac  29554200 ---->MYB46(1) ---->MYB83                                  <---------ICU4 ----->TOE2(3)                               --------->YAB1 ------MYB59                                 <--------HAHB4 ----------->AGL15                          <---------YAB1 ------MYB46(2)                             --------->ICU4                     <---------MYB52(1) ------------>AG             <---------AHL20(2)                              --------->YAB1 -----ANAC55(2)             --------->AHL20(2)                               <---------ICU4 ---->ANAC55(2)        <---------DAG2     <---------ICU4                    <---------ATHB12 -ANAC58               <----------DOF2    --------->YAB1                --------->SPL7 -GT1             <---------WOX13(1)--------->TOE2(3)                <---------ANAC58 -ANAC58        --------->ATHB12   ----------->GT1                   <---------ANAC58 -->P      <-----------GT1 <---------YAB1<---------ATHB12            <---------ANAC46             <--   ctaattttgtttttaacttcattgactttattaaaaatcgtcaataatcattttctattcttgtttttttttcgtacaatcgttacttcatacttcatat  29554300                        <---------AHL20(2)                       --------->AHL20(2)                    --------->YAB1                    --------->AHL20(2)                   --------->ICU4                   <---------YAB1                                                                   <                 <---------ICU4                                                           --------->AtLEC2                 --------->YAB1                                                          --------->TOE1(2)                <---------YAB1                                                       ----------->HVH21                <---------AHL20(2)                                                 <---------At4g35610           <----------DOF2                                                         --------->At4g35610 ---------GT1 --------->YAB1                                                       --------->ZAT2   <   tcacatttttagtcttttataattataaaattccattttctaaatcaaatctagactaattttagactataacatgttagtaattagctgacatgcgaag  29554400                                                      --------->LBD16                                                     --------->ANAC58                                                     --------->ANAC58                                                     --------->ANAC46                                                    --------->MYB46(3)                                                  ------>MYB46(1)                                                  ------>MYB83                                                  --------->MYB52(1)                                                  -------->P                                                 --------->MYB55(1)                             --------->ANAC58   --------->MYB46(3)                             --------->ANAC58   <---------MYB59                --------->LBD16                 <---------MYB111(2)               --------->ANAC46           --------------->AtSPL8              --------->TOE1(2)          <---------ANAC46              <---------LBD16--------->ANAC46   <---------MYB111(1)                                 -           ---------->DOF2   <---------ANAC55(2)<---------MYB46(2) ----------->GT1                  -  --------->ATHB12         <---------ALFIN1   ------->TEIL     ---------->DOF2            <---------ANAC58 ---------TOE1(3)    --------->YAB1      <---------ANAC58  --------->YAB1                 <---------ANAC58 ---------TOE2(3)   <------ZmHOX2a(2)    <---------ANAC58<------------CBF         ----------->GT1   -   ttaatgtttgacaaaacgcgcgatcatcaacacgcgagtcaagtcgtgtacctacccgctattgtaaaagagtgaaaacgagaagggtattttcgtaagt  29554500                                                   <---------ZAT6               --------->GLK1(1)          *TSS<----------DOF2               <---------GLK1(1)         <------ZmHOX2a(1)         <---------AHL20(2)            --------->LBD16                                  <---------SPL7   ----------->GT1                    <-----------RAV1(2)                              <---------MYB52(2) -------->ANAC46                      --------->HSFB2a(2)                           ----------->HVH21 -------->ANAC58     --------->LBD16  <---------HSFB2a(2)                         --------->ALFIN1 -------->ANAC58   <---------LBD16    <---------LBD16             <<<<<<<<<TBF1 <---------ANAC46   gcaagcagtatataatgaattcccgtagactcttccctctccaggagtctttagtgttcgttctcttcttcttctatttttgctgtgtgacgaacgagaa  29554600                                                                                               <-----                                                               --------->DEAR3(1)            <-------                                                          <-----------HVH21                  <-------                                                          <-----------TGA1             <---------LBD16                                                  ------>ZmHOX2a(1)                    --------->LBD16                                                 --------->TOE2(3)    <---------HSFC1(2)     --------                                    <---------ANAC58    <-------TEIL  <---------HSFB2a(1)    --------                                    <---------ANAC58 <---------ZAT2   --------->HSFB2a(1)   <--------                        <<<<<<<<<TBF1<----------DOF2 --------->At4g35610               ------>ZmHOX2a(1)              <---------YAB1     <---------MYB52(1)  <---------At4g35610       --------->ANAC55(2)  <----------DOF2    <<<<<<<<<TBF1<---------ARR11(1) --------->ZAT2   --------->HSFC1(2)--------->ANAC46   gactcttttttgaattttgattcttcttcttctccgtttctttcgctacttcctcagcttcgtcaccgtcgaaaattcttcacgttttcctcggaatttt  29554700                                     ----------->GT1                                    ------>ZmHOX2a(2)                                    ================================HOX2a_HOX2a                                   <------ZmHOX2a(2)                                   =================================HOX2a_HOX2a                                   --------->CCA1(2)                                  <---------AGP1                                  <---------ARR14(3)                                  <---------ARR14(2)                                  --------->ARR14(2)                                  --------->GLK1(2)                                  --------->ARR14(3)                                  --------->ARR11(3)            ------->TEIL               --------->ARR11(3)                                  <---------ARR11(3)           <---------CCA1(2)           <---------ARR11(3) ------GT1                 <-------GAMYB                       <---------GLK1(2)         <---------MYB52(1) --HSFC1(2)               <---------MYB46(3)                 --------->LBD16        --------->ANAC46 --HSFB2a(1)              ------>ZmHOX2a(2)                  ------>ZmHOX2a(1)    <-----------GT1 ->HSFC1(2)              <------ZmHOX2a(2)                 <---------ANAC46   <----------DOF2 ->HSFB2a(1)          <---------ANAC58           <---------TOE2(2)           --------->TOE2(3)------- -KAN4(2)             <---------ANAC58           <---------TOE1(2)     ----------------------->TaNAC69(2)   ccaattgtcttctccaattctcttgcgatcgttgaagatctgaaaaattcgaaggtatgtttcctgaatctctcgtcttcctttatactccattatctcg  29554800                                                                                                 ----                                                                                                <----                                                                                               <-----                                                                                               <-----                                           <---------ANAC58                       --------->GLK1(2)              <---------ICU4               <---------ANAC58              --------->YAB1        ------           --------->YAB1               <----------DOF2                  <---------ICU4        ------          <---------YAB1            <---------At5g28300               --------->YAB1          <------        --------->YAB1              <-----------GT1           ------>ZmHOX2a(2)  <---------GLK1(2)  <-----------GT1   <---------ZAT14<-----------GT1      <----------DOF2 --------->ICU4     <---------LBD16 -->HSFB2a(2)--------->ICU4   <-------TEIL--------------->AtSPL3 <---------MYB52(1)      <---------GLK1(1)   aattttacattgatcataatgcttcactgagtttcatttaccctttcgtactctctctctttgatccgatggtcataatcacagaatcgagatttcggat  29554900   ------>ZmHOX2a(2)           <---------ARR14(2)   ================================HOX2a_HOX2a <---------ARR14(2)            <---------AGP1 --------->ARR14(2)            --------->ARR11(3) <-----------ARR10             --------->ARR14(2) <---------ARR11(3)            --------->AGP1             <---------ANAC58 <---------AGP1                <---------ARR11(3)         <---------ANAC46 -->ZmHOX2a(2)                <---------CCA1(2)           <---------ANAC58 --ZmHOX2a(2)               --------->HSFB2a(2)      <---------ARR14(2)                           <-- ----AGP1<----------DOF2    ------>ZmHOX2a(1)     <---------ANAC58                        <---------ANAC46 ----ARR14(2)          <---------GLK1(1)     --------->ARR14(2)                          <------NtERF2 --->ARR14(2)          --------->GLK1(1) <-------TEIL--------->ARR14(2)              --------->ANAC46 --->ARR11(3)   <---------ANAC58 ------>ZmHOX2a(2)<---------ANAC58 --------->ATHB12  --------->ANAC58 ---CCA1(2)     <---------ANAC58<------ZmHOX2a(2) <---------ANAC46<---------YAB1     --------->ANAC58   ctggatctaagcttttatgcgtttgatttcctagatctactgattcatttctgcgtatttgagtgtttatgatttcattcttcttaaacgcagcgtttga  29555000  Previous    Next  AGI:  At1g78570.1    Description:  RHM1/ROL1 (RHAMNOSE BIOSYNTHESIS1); UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic. Identical to Probable rhamnose biosynthetic enzyme 1 (RHM1) [Arabidopsis Thaliana] (GB:Q9SYM5); similar to MUM4 (MUCILAGE-MODIFIED 4), catalytic [Arabidopsis thaliana] (TAIR:AT1G53500.1); similar to RHM3 (RHAMNOSE BIOSYNTHESIS 3), catalytic [Arabidopsis thaliana] (TAIR:AT3G14790.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ68296.1); similar to hypothetical protein OsI_010699 [Oryza sativa (indica cultivar-group)] (GB:EAY89466.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39485.1); contains Int Range:  from: 29554542    to: 29557331    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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