Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               <-------                                                                                             --------                                                                                         --------->GLK1(2)                                                                                  --------->ATHB12                                                                                 <---------YAB1  --------->MYB52(1)                                                           <----------DOF2 --->ANAC55(2)                           --------->HSFB2a(1)                 --------->HSFC1(2) ----ANAC55(2)          <---------At4g35610         --------->MYB46(3)       <---------HSFC1(2) ----HSFB2a(2)          --------->At4g35610     <---------At4g35610    ---------->DOF2  <---------GLK1(2) --->HSFB2a(2)         <---------TOE1(1) <---------HSFB2a(1)         --------->AHL20(2) <---------ARR14(2) ----GT1    <---------MYB52(2) ---------->DOF2  --------->At4g35610  --------->YAB1 <---------WOX13(1)   gaactaagagagaaacaaaccaagtccgatgaataaagaaggaacatttcagcaaacaccatgagaaacaataaaaagaagctttgattggattctgggg  29549300                <---------YAB1              --------->YAB1              <---------ICU4              -------->HAHB4             <---------YAB1             <---------ATHB12    --------->At4g35610                                                     <---------ANAC58    ----------->RAV1(2)                                          ----------->GT1    <---------ANAC55(2)                                          <----------ID1  <-----------GT1  <--------P                                 --------->MYB52(1) --LBD16     --------->ICU4     <---------ANAC46             ---------->DOF2<---------ANAC46 ->LBD16    <---------TOE2(3)  --------->ALFIN1        --------->LBD16      <---------ANAC58   aaaatcacctgtctaatgatggtagatgggaatgtggtggaattaagaagataaacccagaaacaaagggagaaactttcgtattcttcatcgtctactt  29549400                                                          --------->ANAC58                                                          --------->ANAC58                                                          --------->ANAC46                                                      <---------ALFIN1                                                     <---------ZAT14                                                     <---------ZAT18             --------->ARR11(3)                      --------->ZAT14             <---------ARR11(3)                      --------->ZAT18          --------->AHL20(2)                      <---------At4g35610  --------->ANAC58         -----          <---------AHL20(2)                  <---------REM1(1)        --------->ANAC46         -----       --------->TOE2(3)          <-----------GT1 --------->At4g35610  --------->ANAC58         ----- --------->TOE2(3)        <------ZmHOX2a(1)   --------->YAB1   <---------MYB52(1)       <----------DOF2   caacatcaacattaaaatcttctaataaggagtatttctccgtctcaattgtagctgcactcgccattacttcaccccaaaaaaactcgactttgtatac  29549500                                               --------->ZAT14                                     <---------MYB46(3)                                     ----------->GT1 ---->ANAC46               <----------DOF2--------->REM1(1)   ----------->GT1 ---->ANAC58  --------->ANAC58     <---------ANAC58    ------>MYB46(1)       ----------->GT1 ---->ANAC58  --------->ANAC58     <---------ANAC58    ------>MYB83 ---------->DOF2           -------   gaaacccttataaaccaagaaaaccctctctttttttgctggttacaactacagacctatcgattagttaaaaagagaaatgaaaaatcgtcgaaagtgt  29549600                              <---------ANAC46                              --------------------->WRI1                           <---------ANAC58                           <---------ANAC46                           <---------ANAC58                        <------NtERF2                       --------->MYB52(1)                       ------>NtERF2                      *TSS                       <-----------HVH21            --------->At5g28300                      <---------DEAR3(1)            <-------GAMYB                      --------->O2                 <---------MYB46(3)                <----------DOF2                      <---------O2               <---------At4g35610              <---------AtMYB61                      --------->DEAR3(1)        ------>NtERF2                    <---------MYB52(1)                    ------>NtERF2              <---------DEAR3(1)               --------->LBD16                    --------->LBD16           --------->ATERF1(1)     --------->ARR14(2)                    <---------ATERF1(1)      <---------ATERF1(1)      <---------ARR14(2)                   <---------DEAR3(1)       --------->DEAR3(1)       <---------CCA1(2)         <---------DAG2<---------ATERF1(1)  <---------DEAR3(1)     <---------ANAC58--------->MYB55(2)         <----------DOF2--------->ATERF1(1) --------->ETT(2)<-----------GT1 <---------SPL7 ------>ZmHOX2a(2) --------->ANAC46         ----------->HVH21      <---------ANAC58<---------MYB46(3) -->ALFIN1        <---------LBD16  <---------ZAT18 ----------->GT1<-------TEIL<---------LBD16    <---   tgatccctcgactttttctctccggcgtcgcgtcttgtgaacttcgtcgacggctgttaatataacggttcgtatcgtcttccggtggtttactgagttg  29549700                                                                                <---------DAG2                                                                                <----------DOF2                             <---------At4g35610                   <---------ARR14(2)           <----    <---------ANAC46         --------->At4g35610          --------->YAB1  --------->REM1(1)     <----  <---------ANAC46          <-----------RAV1(1) ---------->DOF2<---------At4g35610    ---------->ID1 ------ANAC46  <------ZmHOX2a(1)<---------At4g35610  ------------>CBF     <---------ALFIN1   <-------   tgttttgtggggagagaggagtgctataatctgctgcttcgcgtccatagaaaagcccaatagtcagccaatccctacacctctttttgttcttcttact  29549800                          --------->ALFIN1                        <---------ANAC58                    ---------->DOF2                   --------->AHL20(2)                   <---------AHL20(2)               --------->ICU4                                      --------->GLK1(1)             <----------DOF2                         --------->ANAC58         <-----------GT1    --------->TOE2(3)   <---------ANAC58             --------->ANAC58      <---------ICU4 ------DOF2  --------->TOE2(3)                --------->YAB1       <---------GLK1(1) -----DAG2------->GAMYB <---------ANAC46   --------->YAB1         --------->ARR11(3) ----GT1<---------At5g28300             <----------DOF2           <---------ARR11(3)   tttcttcattaactgccttaattaaagcgtgtgtattaatgtctttaatgacaagaagcaagatgaaagatttctcttaattacaaaattacgaagaaac  29549900                                   <---------ARR11(3)                           --------->ANAC58                           --------->ANAC58                           <---------ANAC55(2) --------->GLK1(1)                             <-------                    ------>ZmHOX2a(1)          <---------GLK1(1)                             --------                    =======================HOX2a_HOX2a                                      <--------                   --------->TOE2(3)        ----------->ARR10                               <--------             <----------DOF2       --------->ARR11(3)                           ---------->DOF2<-----     <---------YAB1--------->TOE1(3)<------ZmHOX2a(2)               ---------->DOF2         <--------   atgttttatgagagtctttttccttaaatacgcataagatcaaggtgagatttcccattgagtttttgagtaaagaaggcatcaaagtactcttgtgtgc  29550000                                <---------REM1(2)        <---------WOX13(1)   <----------DOF2         <---------CCA1(2)           <--------ATHB1--------->HSFB2a(2) --ZAT18             <---------At4g35610               --------->ATHB12      <---------YAB1 ->ZAT18             --------->At4g35610              <---------YAB1 <---------HSFB2a(2) -ANAC46           <---------ANAC58                   <---------ATHB12--------->LBD16 -ANAC58           <---------ANAC58    <----------DOF2--------->ICU4<---------LBD16 ----At4g35610<---------ICU4<---------ARR14(2)     ------------>ATHB5<---------LBD16 -ANAC58  --------->MYB46(3)--------->ARR14(2)  <------ZmHOX2a(1)<----------DOF2          --------->MYB46(3)   tcatacttttgaacaaacattgcttctgcctatctacaaggcttttcgcaggacgaatgattgtctcctttccgggactatgaaacatcgcaaccgataa  29550100                                                                    <---------YAB1                                                                ===================================bZIP_DOF                                                                <----------DOF2                                                    <---------MYB52(1)                        <----------DOF2     <---------ARR11(3) ------>ZmHOX2a(2)                     --------->DEAR3(1)     --------->ARR11(3) <---------ICU4                  <---------ALFIN1         <---------GLK1(1) <---------ARR11(3)                  --------->AtMYB61 --------->HSFB2a(1)      --------->ARR11(3)                 --------->MYB46(3) <---------HSFC1(2)--------->MYB52(2)               <-----------GT1      <---------HSFB2a(1)    <---------YAB1                     -------   <----------DOF2--------->DEAR3(1)--------->HSFC1(2)<---------MYB46(3)                 --------->TGA1a   cctctctttctctgaattcaccaccgctctatgctcgatgcttcgatatctcccgtttgttatgatctttacaatagcaaacaaaacactcacatcagaa  29550200  Previous    Next  AGI:  At1g78540.1    Description:  protein binding / signal transducer/ transcription factor. similar to transcription factor-related [Arabidopsis thaliana] (TAIR:AT1G17040.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ75104.1); contains InterPro domain SH2 motif; (InterPro:IPR000980); contains InterPro domain STAT transcription factor, core; (InterPro:IPR001217); contains InterPro domain Concanavalin A-like lectin/glucanase (InterPro:IPR008985) Range:  from: 29545987    to: 29549658    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g78550.1    Description:  oxidoreductase, 2OG-Fe(II) oxygenase family protein. similar to SRG1 (SENESCENCE-RELATED GENE 1), oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arabidopsis thaliana] (TAIR:AT1G17020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70478.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283) Range:  from: 29549820    to: 29551380    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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