Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------->LBD16              <---------ALFIN1       <---------ARR14(2)       --------->ARR14(2)       <-----------ARR10      <-------GAMYB     <---------MYB46(3)     <---------DEAR3(2)    <---------DEAR3(1)   <------NtERF2<---------LBD16  <---------RAP2.3(1)                                           ----------->HVH21 <---------RAP2.6(2)                                          ----------->GT1 <---------RRTF1(2)                                           <------MYB83 <---------RRTF1(3)                                           <------MYB46(1)                     <-- <---------RAP2.3(2)   <---------AHL20(2)  ---------->ID1   <--------P----------->GT1           <---- <---------DEAR3(1)----------->GT1  <---------YAB1     <------ZmHOX2a(2)                        ----- ---->TOE1(3)--------->ZAT14    <---------GLK1(2)<---------ANAC46  --------->bZIP60(1)         <----- ---->TOE2(3)<---------ZAT14    <---------ARR14(2)<---------LBD16  <---------bZIP60(1)      <--------   atagcggcggttctctgcaccgggtttaattttggattctgattcgtcgttttggggatcaagttggtgacatcgttacatagtttcttccaagacggtg  29497400         <------NtERF2       <---------ANAC46                      ----------->HVH21       --------->ETT(1)              <---------CCA1(1)     <-----------HVH21               <---------RVE1(1)    <-----------RAV1(1)             <---------ARR11(3)  <---------AtLEC2                  --------->ARR11(3)                            <---------ANAC46 -------ANAC46                      <---------GLK1(2)                             <---------ANAC58 -----MYB46(3)                    ----------->ARR10                  <---------ZAT18 ---->MYB55(2)                --------->ANAC58                     --------->At4g35610 ----AtMYB61                  --------->ANAC58       <------ZmHOX2a(1)            <---------ANAC58 -DEAR3(1)                  --------->MYB52(1) <---------LBD16   <-----------RAV1(2)               <-   gtttgaatgtcggagattggagagaagacgagacggaagattttttgttgacggaggaagaaacatagcaggggactactagtttcttgtttctaagtgt  29497500                                                                  <------ZmHOX2a(1)                                                             --------->WRKY18(1)                                                           <------MYB46(1)                                                          --------->MYB59                                                      <---------HSFB2a(1)                                                      <---------HSFC1(2)         --------->CCA1(2)           <------ZmHOX2a(1)--------->HSFC1(2)    ---------->DOF2          <---------HSFB2a(2)      --------->HSFB2a(1)                   <-------- <------ZmHOX2a(1)           --------->HSFB2a(2)    ---------->DOF2<---------ARR14(2)       --------- --------TOE2(3)        --------->MYB59 --------->At4g35610<------MYB83  <-------GAMYB      ---------   tgaggaaaaagatagagattgaagtttaggtctcgaagaggaagatgaagttgagaaagttcggtcgaggaattgggttgaagtagaaggaagtaaggta  29497600  --------->ANAC58  --------->ANAC46                --------->ALFIN1  --------->ANAC58                <---------ARR14(2) -TOE2(3)                 --------->ANAC46 >DAG2             --------->ATHB12                                                      <---------YAB1 >MYB59      <---------GLK1(2)------>NtERF2                                     ---------->ID1   gtagaagccatagtcgattcttgattaaacgctgcggtttggggttttggtattggtttcttcaagaccaagtttgtgttttgtccatattgtgagtgat  29497700                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                        <-------MYC4                                                                                        -------->ABF1                                                                                        ------->MYC3                                                                                        <-------MYC3                                                                                        ------->MYC4                                                  >>>>>>>>>>GATA-1                      <-------MYC2                                                <---------YAB1                          ------->MYC2                                             <---------YAB1                            <---------ANAC55(2)                                           ----------->GT1                             --------->TGA1a                                          --------->ICU4                               --------->O2                                        --------->YAB1       --------->ANAC46          <---------O2                                       <---------ATHB51      --------->ANAC58          <---------TGA1a                                 <---------HSFB2a(2)--------->YAB1                 <-----------GT1---                               --------->MYB52(1) <-----------GT1   *TSS       ==================bZIP_DOF                           <-------TEIL--------->ICU4<-----------TGA1  <-----------GT1 --------->ANAC55(2) --------->ARR11(3)   --------->AHL20(2)--------->MYB52(1)   --------->ANAC58  <----------DOF2------>ZmHOX2a(1) --------->GLK1(2)    <---------AHL20(2)<---------ICU4  --------->WOX13(1)     ======================   gagcatcttgggacagaaggctatatatatacataccagaaataatggttattatcgtcattcacgctactattttctcatcttttaacacgtgtcctaa  29497800        <---------O2        --------->bZIP60(1)        --------->O2        <---------TGA1a        =======================================bZIP_DOF        --------->TGA1a     ----------->TGA1     ----------->HVH21   --------->At4g35610 ------HAHB4 ----->HAHB4 ------ATHB1 -------ICU4 ------>ATHB51 ----->AHL20(2)                                    --------->AHL20(2) ------ATHB51                                      --------->AHL20(1) ------YAB1                                   ------------>CBF ----->ICU4                              --------->YAB1 ------ATHB12           <---------YAB1  <---------YAB1                                        ------- ------>YAB1     --------->ANAC55(2)<----------DOF2<---------AHL20(2)                <---------YAB1 =================bZIP_DOF --------------->AtSPL8  <---------AHL20(1)             <---------AHL20(2)   taattatctgacgagacttacatattttcatcgtccctctttatcattttcaataaaatggctcatcttgtttatctcccacaatttatctttggataat  29497900                                                              --------->LBD16                                                              ------>NtERF2                                                             <---------RAP2.6(2)                                                             <---------LBD16                                                     <---------AHL20(2)                                                  <---------AHL20(1)                                                  --------->AHL20(1)                                                  --------->ARR11(3)                                                  <---------ARR11(3)                                                <---------ARR11(3)       <---------AHL20(2)                       --------->ARR11(3)       <---------AHL20(1)               <----------DOF2      --------->ANAC46            <---------ANAC46       --------->AHL20(1)               <---------DAG2 <---------AHL20(2)            <---------DAG2       --------->AHL20(2)            <---------------AGL15  <---------LBD16      <------ZmHOX2a(2) ----------->GT1                     --------------->AGL15<-----------GT1       --------->ARR11(3) -->YAB1        <---------ICU4    <-----------GT1--------->CCA1(2)              <---------ARR11(3)   aagttgtaataaatttgatcatttcacttagaaatttttctactttaagagatatatttttttccggcattctagtttaagagatcaatttttgtgtatt  29498000                                                                                           --------->AHL20(1)                                 <---------HSFB2a(2)                               --------->DOF5.7(2)                                 --------->HSFB2a(2)                   -------->P  --------->At5g28300                        <---------GLK1(2)<---------ANAC58  <------ZmHOX2a(1)      ----------->GT1   -                        --------->ARR11(3)        <---------YAB1   <---------ARR11(3)      <---------AHL20(1)                        <---------ARR14(2)       <-----------HVH21 --------->ARR11(3)      <---------ARR11(3)  --------->ALFIN1    ----------->ARR10  <---------ANAC58<---------TOE2(3)      <---------ORA47(1)  <   agaagtgtttgaagtagttttgatcagattttgttttagaagtgcttacaatgtcattgaaggatggaagaactacctcttggacggtaacaaaatattt  29498100                               ----------->GT1                             <---------ZAT18                             --------->ZAT18                             <---------ZAT14                         --------->DAG2         --------->ANAC46                        ---------->DOF2         --------->ANAC58                     <---------HSFB2a(2)        --------->ANAC55(1)              <-----------------AGL1            --------->ANAC58                          ------>MYB83              <-----------------AG              --------->O2                              ------>MYB46(1)             ---------->ID1  --------->ZAT14    --------->ANAC55(2)                      --------->MYB52(1) <------ZmHOX2a(2)   --------->HSFB2a(2)      <-----------GT1                   <---------At4g35610 -------->ARR11(3)  <---------LBD16 <---------YAB1    --------->TOE2(3)<-----------GT1  --------->TOE1(2) ---------ARR11(3)<----------DOF2--------->ICU4 <---------ANAC55(2)  --------->AHL20(2) --------->TOE2(2)   gagatcaactgttttgtcttctttcggaaagtgcagttattagtagtttcacgtaacataaaacaaacaaatttaacaattgagatgataccaacgatgt  29498200                                <---------ZAT6                            <---------YAB1                          --------->ATHB51                  ------>MYB83                          --------->YAB1                    ------>MYB46(1)                          <---------ICU4                  <---------MYB59                          -------->ATHB1                  <---------MYB111(1)                          <--------HAHB4                 --------->ANAC55(2)  <---------AtMYB61                          --------->ATHB12             <-----------GT1    <---------ANAC46                         <---------ATHB12           <---------YAB1        <---------ANAC58                         <---------ATHB51          --------->AHL20(2)     <---------ANAC55(1)       <---------MYB52(1)--------->ICU4          --------->ICU4           <---------ANAC58    <-------TEIL      <---------AHL20(2)    --------->ANAC55(2)         <---------AHL20(2)--------->ICU4   gagacattcgttatgggaacttattcaattattagtcttagtttttaagtgatttttatacctaatagtccaaattacttgtggtcgtagtaatagttgg  29498300  Previous    Next  AGI:  At1g78390.1    Description:  NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9). Identical to 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplast precursor (NCED9) [Arabidopsis Thaliana] (GB:Q9M9F5); similar to NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) [Arabidopsis thaliana] (TAIR:AT1G30100.1); similar to NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE3) [Arabidopsis thaliana] (TAIR:AT3G14440.1); similar to NCED2 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2) [Arabidopsis thaliana] (TAIR:AT4G18350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63573.1); similar to 9-cis-epoxycarotenoid dioxygenase 1 [Citrus sinensis] (GB:AAY89370.1); similar to 9-cis-epoxycarote Range:  from: 29495788    to: 29497768    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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