Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              <----------DOF2                                                                     ------>MYB83                                                                     ------>MYB46(1)                                                                     --------->ANAC58                                                --------->ZAT6       --------->AtLEC2                                              --------->YAB1         --------->ANAC58                                    <---------YAB1              --------->ANAC58      <----------DOF2                             --------->YAB1  <---------ATHB12   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <---------HSFB2a(2)    --------->WOX13(1)   --------->ANAC58<-----------TGA1                    --------->HSFB2a(2) ------------------------>ANAC81 --------->ZAT18                 <---------YAB1   <-----------GT1        ---------->DOF2<---------ZAT18   caaatttttggttttttttcttatagaacattgatattacaattgcaatcacactaaaacaaaggcacaccaagcacactttcgtcatctttttccatct  29483600                                                                                    <----------DOF2                                           --------->TOE2(3)                      <---------At4g35610                                          --------->ATHB12                    --------->TOE1(3)                                          <--------HAHB4                      --------->AtMYB61                                          --------->YAB1                ------->GAMYB        --------                                         <---------ATHB12             <---------At4g35610   ---------                <---------ALFIN1         <---------YAB1 <---------TOE2(3)     --------->TOE2(3)  ----        <----------DOF2       <----------DOF2       <----------DOF2   --------->At4g35610<---------AtLEC2   ctgaatttctcttttgctccacattccatcttctttcaactctatcattagctcctttaagtttgcaatttcaactgcaacctcagcttttgcattgatt  29483700                                                                --------->ANAC46                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                              <---------ALFIN1      ------>ZmHOX2a(1)                                                            ------>ZmHOX2a(1)      --------->TOE1(2)                                                            =============================HOX2a_HOX2a                   --------->GLK1(2)                    --------->ANAC46          ------>ZmHOX2a(2) ->YAB1           <---------ARR11(3)                  <---------ALFIN1          --------->ARR11(3) >ICU4<---------YAB1    <---------ANAC46             <-------TEIL               <---------ARR11(3) ----->ARR11(3)   --------->ARR11(3)         XXXXXXXXXXXXXXXXXXXX>MIR416      <---------ATHB12   atctcgttatcaatgctggagattttgggtagagcatctacaacctcttcatacatacactcctccacccatttgaacaaatgatcctgcaattccatct  29483800                                                           <-----------GT1                                                         <----------DOF2              ------>MYB46(1)               <-----------ARR10                  ---------->DOF2              ------>MYB83                  --------->ARR14(2)   <----------DOF2         <---------LBD16            <---------MYB59           <---------CCA1(2) <---------ICU4       xxxxxxxxxxxxxxxx>smallRNA(i)  <----------DOF2              <---------GLK1(2)     --------->REM1(1)     ---------->DOF2--------->LBD16   caagcttttactgaccaaacacaaaaaacatcacattctcatatcaaatctacttacatctttacagcttttgcaccgaaagaaaggccttccagggttc  29483900                                                            --------->ANAC58                                                            --------->ANAC46                                                            --------->ANAC58                                                            --------->O2                                                         --------->TOE1(2)                                                         --------->TOE2(2)                                                      --------->GLK1(1)                                            --------->ANAC46--------->TGA1a                                  <---------ALFIN1 --------->ANAC58                                  ----------->RAV1(1) <---------GLK1(1)                                 --------->ZAT18   --------->ANAC46                            <-----                 --------->YAB1  <---------ZAT18   --------->ANAC58               --------->REM1(1)                 <---------ICU4  --------->RAP2.3(3)<------ZmHOX2a(1)         <---------At4g35610                --------->ICU4 --------->PCF2  --------->MYB52(1)             --------->ZAT2  -------  <---------ANAC58   --------->RAP2.6(3)    --------->ANAC55(1)               --------->At4g35610  <---------ANAC58 ----------->TGA1        --------------->AGL15              <---------ZAT2  <------   ttagtcgtgctcgatgtaaacatgacgacttcgagcccacatttacacttaacaggaaacccacgactcttgaaacctccagcttcaacatttgaaatca  29484000               <---------ALFIN1                                                                  ----    <------------CBF                                                                            xxxxx ------>ZmHOX2a(1)   <-----------GT1          --------->At4g35610                               <xxxx --------->LBD16  <----------DOF2             <---------At4g35610                               xxxxx *TSS       --------->RAP2.6(2)    <---------ANAC58        --------->ARR14(2)                 <------ ----ICU4 ------>NtERF2 <---------ALFIN1      <---------ZAT2      ------>ZmHOX2a(2)           <------ -->ICU4  <---------At4g35610      <---------ANAC58        <---------ARR14(2)           --------->ICU4 ---ATHB12<---------ATERF1(1)  <---------GLK1(1)    ---------->DOF2                xxxxxxxxxxxxxxxxxx   ttcctgaattgcagcctccactttcaccactcgaattccttgagttgcagctcataatgcagatttgatcgaaaaatttgagagagaataatttttaggg  29484100                                                                                                -----                                                                                             --------                                                                                           --------->HSFB2a(2)                                                                                           <---------ANAC55(2)                                                                                           --------->ANAC55(2)                                                                                       <xxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                      --------->HSFB2a(1)                                                                                      <---------HSFB2a(1)                                                                                     xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                   xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                   <xxxxxxxxxxxxxxxxx                                                                                --------->MYB52(1)                                                                             --------->TOE1(3) ------       --------->ATHB12                                                      <---------DAG2<---------HSFB2a(2)      <---------YAB1                                                         --------->TOE2(3)------- ----->ALFIN1                  <---------ANAC46                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                        xxxxxxxxxxxxxxxx>smallRNA(i)< xxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <----------DOF2                  <---------CCA1(2)xxxxxxxxxxxxx ---TOE2(3) <---------LBD16    <---------ANAC58 <---------At4g35610 <------NtERF2<xxxxxxxxxxxxxxxxxxx ---TOE1(3)--------->ALFIN1    <---------ANAC58 <-------GAMYB     <---------DEAR3(1)xxxxxxxxxxxxxxxx>smallRNA(i) xxxxx>smallRNA(si3)        <---------ARR14(2) <---------MYB46(3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)-   tttgggttttgatttgggggtttttcagaggtttcgtcgactttgaggtctgttgatagcacaaaacgtcgtcgtatcaccttaacggatgttctgtaac  29484200                                                       ------->GAMYB                                                      --------->ANAC46                                                      --------->ANAC58       <-----------GT1                             <xxxxxxxxxxxxxxxxsmallRNA(s)  <---------MYB52(1)                               <---------WRKY45 <-------GAMYB                                     <---------WRKY12 --------->At5g28300                               <---------WRKY38(1) ---->MYB46(3)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --->HVH21                                        <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxsmallRNA(se3)                       <------NtERF2 xxxxxxxxx>smallRNA(se3)                       xxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxsmallRNA(i2)                    --------->MYB59          ----------->GT1 >smallRNA(i)                     <---------MYB46(3)  --------->ANAC58 xxxxxxxsmallRNA(si3)             --------->MYB55(2)<---------DOF5.7(2)                         <---- xxxxsmallRNA(si3)                ----------->GT1<-----------HVH21----------->GT1               ----- --->RAP2.6(3)                   <---------AtMYB61<xxxxxxxxxxxxxxxxsmallRNA(s)                xxxxxxx -->MYB52(1)                    xxxxxxxxxxxxxxxx>smallRNA(s)    ---------->DOF2               xxxxxxx ---------MYB46(3)           <---------At5g28300 <xxxxxxxxxxxxxxxxsmallRNA(i)           <xxxxxxxxxxxx xxx>smallRNA(i)            <-----------GT1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <---------DAG2 xxxxsmallRNA(se3)          --------->MYB52(1)xxxxxxxxxxxxxxxx>smallRNA(s)           <----------DOF2 ---------->GT1       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->TOE2(3)    <---------WRKY12----   ggctgttaattacgctgttagaagaatttttaacggtggtttattaggccgagtcaacgcaaacttaaaagttaaaacagaagtcaactttttgttgaga  29484300                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                          <---------MYB52(1)                         <xxxxxxxxxxxxxxxxsmallRNA(s)                         <xxxxxxxxxxxxxxxxsmallRNA(i)                         --------->At5g28300                         <-------GAMYB                     xxxxxxxxxxxxxxxx>smallRNA(i)                     xxxxxxxxxxxxxxxx>smallRNA(s)                     <---------DOF5.7(2)                    <---------ZAT14 xxxxxxxxxxxxxxxx>smallRNA(i)                    xxxxxxxxxxxxxxxx>smallRNA(i)                    xxxxxxxxxxxxxxxx>smallRNA(s)                    --------->ZAT18 <---------------AGL15                    --------->ZAT14 --------------->AGL15                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxx>smallRNA(i)                  xxxxxxxxxxxxxxxx>smallRNA(i)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <xxxxxxxxxxxxxxxxsmallRNA(s)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <-----------HVH21 ----------->GT1 -----ZAT6    <xxxxxxxxxxxxxxxxsmallRNA(s) ------>GT1  <-----------GT1       ----------------->AGL1 --------->AHL20(2)                    ----- xxxxxxxxx>smallRNA(i)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <-----------GT1      <-----------GT1 xxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------AHL20(2)   <---------AHL20(2) xxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(i)<---------TOE1(3)  <-----------GT1        <------ ------->GT1<xxxxxxxxxxxxxxxxsmallRNA(i)            <---------TOE2(3) <-----------GT1      <---------AHL20(2)   gttaaaacggtcatttcacgagttcacggttaatttggccattttttgtaagttgaggtattaaataacatttttcccctacttaatttccatttttttc  29484400                                                                                <---------GLK1(2)                                                                                >>>>>>>>>ARR1                                                  --------->ANAC46            <---------YAB1                    <----------DOF2           <---------AHL20(2)              <---------TOE2(3)               <---------GLK1(1)         <---------MYB52(1)           --------->LBD16        <---------MYB52(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <---------RAP2.6(3)<<<<<<<<<TBF1------>ZmHOX2a(1)       <-----------ARR10>>>>>>>>>ARR2 ---->YAB1     --------->GLK1(1)  ------->GAMYB  <---------LBD16     ----------->RAV1(1) -----GT1 --------->MYB52(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->ANAC46   ataactagccgttagtgatttccttttcttcttcaacgctcctgttatttatacggagacaagagtttctcccccagattaagattgtctagcatacact  29484500  Previous    Next  AGI:  At1g78355.1    Description:  transposable element gene. similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G17277.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Zinc finger, GRF-type; (InterPro:IPR010666) Range:  from: 29483397    to: 29484001    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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