Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                   <-                                                                                                  <--                                                                                                  <--                                                                                                  <--                                     <------ZmHOX2a(1)                                            <--                                     <---------------AtSPL3                                       <--                                     =================HOX2a_HOX2a                                 <--                      <---------ANAC58                                                            <--                      <---------ANAC46  ==============HOX2a_HOX2a                                 <--                      <---------ANAC55(2)      ------>ZmHOX2a(2)                                 <---                 --------->YAB1      ================HOX2a_HOX2a                              <------               <---------WOX13(1)  --------->ALFIN1 --------->REM1(2)                        --------             --------->ATHB12 --------->MYB52(1) ------>ZmHOX2a(1)                           --------            <---------YAB1    ---------->DOF2<---------ARR14(2)        <---------TOE2(3)     --------          <------ZmHOX2a(1) --------->MYB46(3)<------ZmHOX2a(2)        <---------TOE1(3)     <-------       <------ZmHOX2a(1)--------->DOF5.7(2)  --------->ARR14(2)    <-------GAMYB             <-------    <---------LBD16   <---------ANAC58  =============HOX2a_HOX2a  <-----------RAV1(1)  ------->TEIL<-    <-----------RAV1(2)--------->TOE1(3)<------ZmHOX2a(1)--------->ANAC46           <---------YAB1<--   agcaaaccaggaggacgattgataacgtgaaccaaaggaggaggacggatcctatgtagacgcgaactctgttgaggtttagggtgatgaatcggttgtt  29469500           --------->AGP1           --------->ARR11(3)          --------->GLK1(1)          <---------GLK1(1)     <---------ZAT2     --------->At4g35610     --------->ZAT2     <---------At4g35610   <------NtERF2   --------->ATERF1(1)  --------->LBD16 <---------DEAR3(1) <---------ANAC46 --------->ALFIN1 ----->NtERF2 ------NtERF2 ---------LBD16 ---------At4g35610 -------->ATERF1(1) --------RAP2.3(1) -------ANAC58 -------DEAR3(1) -------RAP2.3(3) -------RRTF1(3)            ----------->HVH21 -------RAP2.3(2)       <-----------RAV1(2) -------ANAC58        --------->ALFIN1 -------RRTF1(2)     ------->MYC3 -------RAP2.6(2)    <-------MYC3 ------LBD16 <-------TEIL --------->At4g35610 -GAMYB  ----------->ARR10<---------At4g35610 ->MYB55(2)<---------ARR11(3) ->MYB111(2) ------>ZmHOX2a(2)                                                             <--------P ->MYB52(2)<---------ARR14(2)         --------->MYB52(2)                                  <-------GAMYB ----RAV1(1)<------ZmHOX2a(2)       <---------MYB52(1)                                   <---------MYB46(3) --MYB46(3)--------->ARR14(2)       <--------P                                         <------ZmHOX2a(1) --------RRTF1(1)<-------TEIL  ------->TEIL         <---------ARR11(3)        ----------->GT1 <------ -------ANAC46  <---------MYB52(1) <---------MYB52(1)                     --------->ARR11(3)<-------TEIL   gcggcggagcagagatccgttcatgtgcaggtgaaccggttagtttctgaacaacatctctgaaatcgttcttgttgatattgtaaacaggaggttgatg  29469600                                       --------->ALFIN1                                    --------->ALFIN1          ----------->HVH21                                    <---------AtMYB61        <---------HSFB2a(2)                               <---------MYB46(3)        <---------GLK1(2)                          -                  --------->ATHB12 <------ZmHOX2a(1)     <---------ARR14(2)                <---------DEAR3(2)                <---------WOX13(1) ==================HOX2a_HOX2a                           <---------MYB46(3)       --------->GLK1(1)      <---------AtMYB61          --------->ARR14(2)               <---------TOE2(2)       --------->GLK1(2)    <---------MYB46(3)       <-----------GT1                      <---------DEAR3(1)      <---------GLK1(2)    <---------DEAR3(1) <------ZmHOX2a(2)                <------ZmHOX2a(1)    <      --------->ARR14(2)  --------->At4g35610<---------ARR11(3)             <------ZmHOX2a(1)      <-      <---------ARR14(2)  <---------At4g35610--------->ARR11(3)  <---------ANAC46         <---------TOE1(2) ---TOE2(3)   --------->ATHB12--------->ALFIN1=====================================HOX2a_HOX2a     <-   ttgatggagattcccttgattgatttgcagcggtggaggaggtggaagatcaatttcacgattcgcgacggagacggaggaggaagagttcgtcggtttt  29469700                                                                                                 <---                                             <---------MYB52(1)                              <------NtERF2                                        ------>ZmHOX2a(2)                                  <---------ANAC46                                       <---------GLK1(1)                                   <---------DEAR3(1)                                      --------->ARR11(3)                                  <---------LBD16                                      <---------ARR11(3)                               --------->SPL7             --------->At4g35610     --------->YAB1                                   --------->CCA1(2)             <---------At4g35610     <---------ICU4         <---------ANAC46         <---------ARR14(2)      <---------YAB1                --------->ICU4        <-----------GT1            --------->ARR11(1) -------->ARR11(3)             --------->ANAC55(2)     <---------ZAT6                --------->ARR14(2) ---------ARR11(3)            <---------TOE2(2)--------->MYB52(2)                   <------NtERF2---- --------CCA1(2)              <---------TOE1(2)<---------MYB46(3)                 <---------ANAC46 --------GLK1(1)             <-----------RAV1(2)<-------GAMYB  <---------MYB52(1)<---------LBD16<----   gatatcttatgagacagcttattgagttgtctcaggtaatgatctctgttcgttgtattgttaccggtactactcgttgcagaggcggatacggcggagg  29469800                                                                          --------->CCA1(2)                                                                         --------->ARR14(2)                                                                         <---------ARR14(2)                                                                         <---------GLK1(2)                                                                      --------------->AGL15                                                                      <---------------AGL15                                                                     ----------------->AGL1            <-----------GT1                                          <-----------------AGL1        <------ZmHOX2a(1)                                            <-----------------AGL3     <------NtERF2                                                   <-----------------AG    --------->LBD16                                                  <-----------------AGL2   --------->DEAR3(1)                            <<<<<<<<<TBF1       ----------------->AGL2  <---------LBD16                             <<<<<<<<<TBF1         ------>NtERF2      --------->ARR11(3) ------ARR14(2)                             <------------------------ANAC81   <---------ANAC46 ----->ARR14(2) <---------At4g35610        <<<<<<<<<TBF1  <------------------------ANAC81--------->MYB52(1) --ZmHOX2a(1)<---------At5g28300       <-----------GT1<----------DOF2----------------->AGL3   aatcgccggaggagttacagctcttatccatatcgaaagtttttcttcttcttcttcttttgtttttctctgccagatttgggtagagagataatggaga  29469900                                                           <---------RVE1(1)                                                           <---------CCA1(1)                                                          --------->AHL20(1)                                                          --------->ARR11(3)                                                          <---------AHL20(1)                                               --------->AHL20(2)                                               <---------AHL20(1)                                       <----------DOF2    <---------ARR11(3)                                   ---------->ID1      <---------TOE2(3)                           <----------DOF2     <---------AHL20(2)   ----------->GT1        ----------                  --------->YAB1  <-----------GT1     ---------->DOF2----------->GT1     <-----------TBP         ----------->GT1  <---------ANAC58    *TSS  <---------AHL20(2)      ------------>CBF <-------         <---------YAB1   <---------ANAC58 <---------AHL20(2)  <---------AHL20(2)      <-----------TBP   agacgaagatgatgaaaaaatgaaaatggctttttttttctctttttattttattttaaagatattttataagttaaaaacaattttggttttatataaa  29470000                            <---------AHL20(2)                          <----------DOF2                       <---------AHL20(2)                          <---------------AGL15                 --------->AHL20(1)                         <-----------------AGL3           ----------->GT1                   <---------ICU4            --------->YAB1     --------->AHL20(2)                  --------->ICU4          --------->HSFC1(1)   <---------AHL20(2)                --------->YAB1            <---------HSFB2a(2)  --------->AHL20(2)               <---------YAB1 <------------CBF           ----------->GT1                 <---------ARR14(2)             --------------->AGL15        --------->HSFB2a(2)  <---------ATHB51          <---------GLK1(2) ->TBP       ==============================MADS_MADS   ---------->DOF2     ------->TEIL  --------->ARR14(2) --AHL20(2)  <---------------AGL15        <---------HSFC1(1)   --------->ICU4     <<<<<<<<<GATA-1   ctataggctatacgactataataagtagctttaattggatttttctagaataagatgaaaaggaaataatttgtctgtatgtttatctatggattctctt  29470100                               <---------ANAC58                               --------->ANAC55(2)                               <---------ANAC55(1)                               <---------ANAC55(2)                               <---------ANAC46                          <---------ICU4                          <---------AHL20(2)                       <---------ICU4                      --------->ICU4                                                                <                      <---------ATHB51                                                              -                      --------->AHL20(2)                                                            -                      <---------AHL20(2)                      <---------AHL20(1)                   --                  <---------AHL20(2)                       --------->AHL20(2)                      <-                  --------->AHL20(2)                     <----------DOF2                           --              --------->AHL20(2)                        --------->TOE2(3)                          --              <---------AHL20(2)                      ------->TEIL                                 <-             <---------WOX13(1)<---------ANAC58   <---------------AtSPL3  ------>ZmHOX2a(1)        ==          <---------YAB1 <---------YAB1           --------------->AtSPL8  ----------->HVH21        -- --------->AHL20(2)<---------AHL20(2)           ------->TEIL  --------->ARR11(3)          -----------   ccatataatgctctgattaattaaataattaatgcgtgtttatatgtatgaacatgtacctttatatattctattcctgaccaatttgtatattgtttaa  29470200                <----------DOF2             --------------->AGL15       <---------MYB46(3)   --------->ATHB12 <---------MYB52(1) ---------------AGL15 -------------->AGL15 -------->TOE2(3) --------------->AGL3 ----------------AGL3            <------------MYB.PH3(1) --------------->AGL2          <-----------GT1 --------------->AG       <-------GAMYB                                   <---------AHL20(2) ----------------AG      <---------ANAC58                           ----------->GT1 ============================MADS_MADS                   --------->ARR11(3) --------------->AGL1    <---------ANAC46    ---------->DOF2      <-------GAMYB >GT1<---------WOX13(1)  <---------ANAC58  <---------TOE2(3)      <---------ANAC46                 <-   tcccttaattggttactgcatttagtttcgttgtaactgttttttaagaaagaaatttagatgttgtgagttgtaatttatgctatacttgtagttgtat  29470300                                                                                                   --                                                                                                   <-                                                                                                   --         --------->ARR11(3)                <---------YAB1          ----------->GT1                 <-         <---------ARR11(3)   --------->ARR11(3)            --------->ANAC58                       --         <---------AHL20(1) <---------TOE2(3)               --------->ANAC58                       <-         --------->AHL20(1) <---------TOE1(3)        --------------->AGL15                       ----   ----------->GT1    <----------DOF2  <----------DOF2    ---------->DOF2                    <------ZmHOX2a(1) ------TEIL    <---------CCA1(2)   ---------->ID1    <---------------AGL15                  ---------   atacatggaaatatatcatctcttctttttaagatttgtttctttatttttgtttctaactaaagcaaatggaaaaaaaaactgaagttttgagaggaga  29470400  Previous    Next  AGI:  At1g78310.1    Description:  VQ motif-containing protein. similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT2G35230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63409.1); contains InterPro domain VQ (InterPro:IPR008889) Range:  from: 29468549    to: 29469946    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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