Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    -------->HAHB4                                  --------->YAB1                                  <---------ICU4                               --------->YAB1                                                       -              <---------ARR11(3) <---------ATHB12                        <---------WOX13(1)       <--              <---------AHL20(1) <---------ATHB51                      --------->ATHB12           <--        --------->TOE2(3) <----------DOF2                             <---------YAB1      --------->YAB1 --------->YAB1        <---------ARR11(3)  <---------YAB1   <-----------GT1      ----------->GT1 <--- --->ANAC46   --------->AHL20(1) --------->ICU4     <-------TEIL  <---------ATHB12      --------->GLK1(2)   caattagaaacatcaaaatattcaataactttctaataatgacacattatagcatacattattctccaatctttgattgaagaatgtaagaatcagtatt  29451500                                                         <-------GAMYB                                                        --------->MYB52(2)                                                        <------MYB46(1)                          ----                                                      <---------MYB52(1)                      <------                                                     <-------GAMYB                       ----------->HVH21                                                  <---------At5g28300                   <-----------HVH21                                                  -------->P                           --------->ANAC46                                              --------->ARR11(3)                       <---------O2 <---------YAB1                               --------->GLK1(2)                        --------->ANAC55(2) -------->TOE2(3)                             <---------ARR11(3)                       --------->O2 -------YAB1                                  <-----------ARR10                        <---------ANAC55(2) -------TOE2(3)                      --------->ARR14(2) <------MYB83     --------->YAB1<---------ANAC58 --------GT1     --------->YAB1      <---------ARR14(2) <---------MYB46(3)             <---------ANAC58   aacattataagtttgtttctaataacatccaaaaatgagtattttcaaaatctaccgttggttatactaattcaaaaataacaaaaactacgtgacatct  29451600                                                                             --------->AHL20(2)                                                                            <---------AHL20(1)                                                                            --------->AHL20(1)                                      ---------->DOF2                      --------->AHL20(2)         ------->TEIL     --------->CCA1(2)                             <---------AHL20(2)      --------->ANAC55(2)--------->ARR11(3)     --------->ARR14(2)     --------->AHL20(2)      <---------ANAC55(2)<---------ARR11(3)  <---------AHL20(2)    <---------AHL20(1)     --------------->AtSPL8         <---------TOE2(3)       <---------ANAC55(2)    --------->ANAC46 ------->GT1<----------DOF2    ----------->GT1<---------AHL20(2)   --------->AHL20(1)   --------->At4g35610 ---At4g35610          <---------TOE2(3)     --------->AHL20(2) --------->AHL20(2)<-------TEIL   ----   ggtaaattatgtacctttagtatttaagatatatagttaagaaagaattaaatctgcatattacataaaaatattaaatatatatacatcagaagaacgt  29451700                                                  --------->TOE2(3)         ---------->DOF2                         ----------->GT1                                   <-      --------->AHL20(2)     --------->DAG2     <---------TOE2(3)                                 ---      <---------AHL20(2)    ---------->DOF2    --------->YAB1                                   <----   --------->YAB1--------->GLK1(1)          <----------DOF2                                --------->At4g35610  <---------YAB1 <---------GLK1(1)      <------ZmHOX2a(1)                <---------At4g35610    <----  --------->ICU4--------->ARR11(3) <---------ANAC46                      --------->At4g35610  ------>NtERF2 ------->GT1    <---------ARR11(3) --------->ALFIN1      ----------->RAV1(2)              --------->ALFIN1   cgttataattaaaaagaagatttctgaataaaaagttgtggaggagctataatgttaaaacctggcaaattagacagcgaagacatactcaagtgctgcc  29451800   <---------ALFIN1 <-----------GT1                 <-----------GT1 ----------HVH21            <---------ANAC58      ------------>CBF            *TSS   <---------CCA1(2) ------>bZIP60(2)           <---------ANAC58     --------->TOE2(3)          --------->TOE2(3) -----ANAC58             --------->ARR14(2)      --------->YAB1             --------->YAB1 -----ANAC58            <---------MYB52(1)  ------------>CBF              <---------ARR11(3)   ttgtcacactctctctctctctctccgtttccttgttacaaaaccctccaatctcaattctaaaatgtcccaaaactatcttattctctatcttctctct  29451900                                               ------>NtERF2                       <------MYB83                                              <---------ALFIN1                     <------MYB46(1)                                           --------->ANAC58                      <---------WOX13(1)                                       --------->ANAC58                        --------->ATHB12                        --------->REM1(2)  --------->ANAC58                   <---------YAB1                       --------->ALFIN1--------->ANAC58                   <---------DAG2        <----   tccctcttctctcttctcttcatatgtgtagggtcgaagacaagaacgacaccgtttcaagggttgcaatttgcaaccttttgattggtctctcttctct  29452000      ------->GAMYB     --------->MYB46(3)    ------>MYB83                --------->ARR11(3)    ------>MYB46(1)         ---------->DOF2    -------->P   <----------DOF2<---------ARR11(3)    --------->ANAC58  <---------YAB1      <----------DOF2    --------->ANAC58--------->YAB1  --------->At4g35610 ------DOF2     --------->TOE2(3)<------ZmHOX2a(2)             <----------DOF2                  -----   ttgcccaaccaaaaacaacctttgatgatataaagatcagccaactttgtccatcccaattctctcttttttttttgtttccctaatgttttagacaaac  29452100                <---------AHL20(2)                --------->AHL20(2)               <---------AHL20(2)            --------->AHL20(2)            --------->ATHB51            <---------AHL20(2)            <---------ICU4           --------->ICU4         <--------HAHB4                                      --------->ATHB12         --------->YAB1                                      <---------ICU4         <---------ICU4                                     --------->ICU4                 <---------ARR11(3)         --------->ATHB51                                   <---------YAB1             --------->YAB1        --------->ICU4                                    <---------ICU4     --------->ARR14(2)     -      --------------->AGL15       <-----------------AGL2  --------->YAB1  <---------------AGL15 <----      --------->TOE2(3) <---------AHL20(2)               <---------YAB1   --------------->AGL15 -----      ====================================================================================MADS_MADS<-   <-----------GT1  <---------AHL20(2)                 --------->YAB1    ----------------->AGL1------ ---->YAB1 <---------YAB1       <-----------GT1 <---------ANAC55(2)      ----------------->AG  <-----   acaattttccataattatttatttattcaatttttatctgtttttgggttacatatatcatcatcattggagactgccatatttgttaatcgtgatatta  29452200                                                                                              -------                                                                                              -------                                                                                             --------                                                                                             --------                                                                                       <---------HSFC1(2)                                                                                 --------->ALFIN1 ---                                                                               <---------ANAC58   ---                                                                               <---------ANAC46------ <-----------GT1                <---------At5g28300                            <---------ANAC58------ -------->AHL20(2)            <------ZmHOX2a(2)                        <---------TOE1(2)     ------>MYB46(1) -----AHL20(2)           --------->MYB52(1)   --------->ANAC58      <---------DEAR3(1) --------->HSFB2a(1) ---->AHL20(2)         <---------MYB52(2)     --------->ANAC58    <-----------HVH21    <---------HSFB2a(1) --------AHL20(2) --------->ANAC58   --------->SPL7      ---------->DOF2 <------ZmHOX2a(1)   ------>MYB83 --->AHL20(2)     --------->ANAC46  <---------MYB52(1) --------->ANAC46<---------TOE2(2)    ------>ZmHOX2a(1) ----AHL20(2)     --------->ANAC58 <---------SPL7    --------->REM1(1)<------NtERF2    --------->HSFC1(2)   atttaactaatgtctcaaacaagctactaccgatcaccgttcggagacacgacttacaccaaagtgttcgtcggaggattagcgtgggaaactcctaccg  29452300          <---------MYB52(1)                     --------->YAB1     <---------ANAC58                           --------->ICU4                                <------ -->MYB46(3)                                 <------NtERF2                                    <------ -->DEAR3(2)                                <-----------TGA1                              <-------TEIL ->MYB52(1)                                 <---------RAP2.6(3)                         --------->ARR14(2) >P  <---------ANAC58                      --------->RAP2.6(2)               ---------->DOF2 <------- ------>ANAC58                        ---------->DOF2              --------->DREB2C(2)  <---------GLK1(2) ------>ANAC58                   --------->GLK1(2)                 --------->DEAR3(1)   <---------ARR14(2) ->GAMYB----------->GT1         <---------GLK1(2)<---------ICU4   <---------LBD16    --------->ANAC55(2) --->DEAR3(1)                 ----------->ARR10 <---------YAB1   --------->MYB52(1) <---------LBD16   acgaaatgcgtcgttacttcgaacagttcggagagattcttgaagccgtcatcatcaccgataaaaacaccggcaagtctaaaggctacggattcgtaag  29452400  Previous    Next  AGI:  At1g78260.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA binding [Arabidopsis thaliana] (TAIR:AT1G22330.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65953.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 29451878    to: 29455408    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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