Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           --------->ICU4                  ------->TEIL                                                         <---------YAB1         <---------WOX13(1)                                                       <---------ICU4          <---------ANAC58                                                      --------->ICU4           <---------ANAC46    --------->AHL20(2)  --------->HSFB2a(2)          --------->ARR11(3)        <---------ANAC58 -------ID1    --------->YAB1 --------->TOE1(2)---------->DOF2              <---------MYB52(1)   ggacaaatttatacgaatgaaaacttagggaacatgtgagagtattgaagaaagagataatgactaatgagacatatcgttgagtgatatgtatatgtcg  29448500                                                                                                  <--                                                                                          <---------ANAC46                                                                                     --------->ATHB12                               ------>ZmHOX2a(1)                                     <---------ICU4                           <---------ARR11(3)                                        --------->ATHB51                           --------->ARR11(3)           --------->AHL20(2)   <---------ICU4       ---                           <---------ARR14(2)           <---------AHL20(2)   --------->ATHB12     ---                           --------->ARR14(2)         --------->TOE2(3)      --------->ATHB51     ---                      <------NtERF2                  <--------HAHB4          <--------ATHB1<-------GAMYB                  <---------ANAC58                   <---------ICU4         --------->ICU4<---------ANAC58                  <---------ANAC58          <----------DOF2                 <---------ATHB51   ------                 <---------MYB46(3)  <----------DOF2<---------YAB1     --------->HSFB2a(2)<---------ANAC58   agtttacaagtgatatagatgggtgccaatatcctcatgctttaatcttttttgatcattaattgttatctctctcgaataattgcataattgcgttgtg  29448600    --------->YAB1               <---------ARR14(2)   --------->ICU4   <---------LBD16 -------ANAC46    <---------WRKY18(1)          ----------->GT1 ------>ANAC58 --------->bZIP60(1)   ------>ZmHOX2a(1)           <---------ZAT2 ------>ANAC58 <---------bZIP60(1)  --------->TOE2(3)           <---------ARR14(2) ------>ANAC55(2)----------->HVH21  --------------->AGL15       --------->ARR14(2)   <--------------- ----->HVH21----------->HVH21    --------->ARR14(2)  ---------->DOF2   <---------ZAT18              -   acgcattgatgaccatgacatgaccggatgagccatttcctcatttatgaagaaaaaaagccttcggacctggtgggcttcttagtggcccaatttcgaa  29448700                                      <--------ATHB1         --------->ANAC55(2)                                      --------->ATHB51      <-------TEIL     --------->AHL20(2)               <---------AHL20(2)   --------->ARR14(1)     <---------AHL20(1)        ----------->GT1            <---------ARR14(2)     --------->AHL20(1)       --------->DAG2  >>>>>>>>>>>>>>>>>LFY     <---------AHL20(2)      ---------->DOF2 --------->PCF2--------->CCA1(2) <---------AHL20(2)  <---------TOE2(3)--------->AHL20(2)  --------->ARR14(2) --------->AHL20(2) --------->MYB52(1)<---------ICU4      --------->ARR11(1) --AGL1         --------->WOX13(1)   <---------ATHB51   ----------->ARR10        ----------->GT1 -------->AHL20(2)<---------MYB52(2) <---------ATHB12<---------ANAC46       --------->YAB1   aaattaataaattggcttcaattaacgaagaaaaagtcaataatttgggcccattgtgtagatacgggctccctccaataagaaggtaaacatttttgtt  29448800                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                              <------                                                                                              -------                                                                                              -------                                                                                             --------                                                                                            <--------                                                                                            ------>NtERF2                                                                                         <---------RAP2.3(1)                                                                                         <---------ATERF1(1)                                                                                         ------>NtERF2                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        --------->ANAC46                                                                                      ------->GAMYB                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    ----------->RAV1(2)                                                                                    <---------ZAT2                                                                                    <xxxxxxxxxxxxxxxx                                             <-----------RAV1(2)                    --------->ZAT2                                           --------->AtMYB61                        <xxxxxxxxxxxxxxxx                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                    <---------At4g35610                    --------->ALFIN1   <---------ETT(2)                             <xxxxxxxxxxxxxxxx                    <xxxxxxxxxxxxxxxsmallRNA(le3)                                   --------->At4g35610                    <xxxxxxxxxxxxxxxsmallRNA(si3)                               <xxxxxxxxxxxxxxxxxxxx                  <---------ANAC58    <xxxxxxxxxxxxxxxsmallRNA(le3)            --------->ANAC58 -----                  <---------ANAC58    <xxxxxxxxxxxxxxxsmallRNA(si3)            --------->ANAC58------          --------->ANAC58           <xxxxxxxxxxxxxxxxsmallRNA(le3)        --------->ANAC58--------->DEAR3(1)          --------->ANAC58           <xxxxxxxxxxxxxxxxsmallRNA(se3)        --------->ANAC46--------->RAP2.3(3)        --------->MYB52(1)   <xxxxxxxxxxxxxxxsmallRNA(si3)                 --------->ANAC58<---------ALFIN1     --------->ANAC46    <xxxxxxxxxxxxxxxsmallRNA(le3)                  ------>MYB83<xxxxxxxxxxxxxxxx   --------->ANAC58<xxxxxxxxxxxxxxxsmallRNA(si3)  <------ZmHOX2a(2)     ------>MYB46(1)<xxxxxxxxxxxxx   --------->ANAC46<xxxxxxxxxxxxxxxsmallRNA(le3)<------ZmHOX2a(1)       -------->P --------->MYB52(1)   --------->ANAC58<xxxxxxxxxxxxxxxxsmallRNA(le3)<---------ARR11(3)   --------->AtMYB61<xxxxxxxxxxxxx  ------->GAMYB   <---------ANAC46 <xxxxxxxxxxxxxxxxsmallRNA(s)       --------->TOE1(2)--------->ZAT18   tcaacacacaaaacgaaatggggtgagagaggctcgaactctcgacctcaggatcactcagtagctatgagacctacgcgctagccaactgcgccaccac  29448900      --------->TOE2(3)      --------->YAB1   *TSS --------->ICU4  --------->ARR14(2)  <---------ARR14(2) ---->ANAC46 ->MYB83<---------YAB1 ->MYB46(1) ---->ANAC58 ---ALFIN1 -->DEAR3(1) -->AtMYB61 ->MYB46(3) -ATERF1(1) xxxsmallRNA(le3) xxxsmallRNA(se3) xxxsmallRNA(fl3) xxsmallRNA(le3) xxxsmallRNA(fl3) xxxsmallRNA(si3) xxxsmallRNA(se3) xxsmallRNA(si3) xxxsmallRNA(si3)                                                              <---------ANAC58 xxxsmallRNA(se3)                                                              <---------ANAC58 xxxsmallRNA(fl3)                                                         --------->ATHB12<------MYB46(1) xxxsmallRNA(se3)          --------->AHL20(2)                            <---------YAB1   <------MYB83 ---->ANAC58      --------->TOE2(3)                <-----------GT1     --------->YAB1 --------->GLK1(2) --->ABI4(1)--------------->AtSPL8     ---------->DOF2<---------------AGL15 <---------WOX13(1) xxxsmallRNA(le3) --------->TOE1(3) ------>ZmHOX2a(1) --------------->AGL15<------------CBF         - xxxsmallRNA(i)   <---------DAG2   --------->TOE1(3)  <----------DOF2------->TEIL     <---------ARR14(2) xxxsmallRNA(s) ------->TEIL       --------->TOE2(3)---------->ID1  <---------CCA1(2) --------->ARR14(2)   cccagataccataattcgaaccttattttttatatatccttcaaagtgttttttttctttttttagttttgaatcttgattgtttgcgaatttggttttg  29449000                         ----------->GT1                                                            -                ---------->DOF2                                                                 -----              <---------ATHB12                           <---------ANAC46                       -----            --------->WOX13(1)                        <---------TOE2(3)             <---------GLK1(1) ---------->GT1--------->YAB1                       <---------ANAC46                --------->GLK1(1)   aaatggaaaatgttcaatcaaagaaaactgaaaatatgtcaaaacgttgcagttttgtggtttataagccgattaagaccagttggaattctcaatttgc  29449100                      ----------->GT1                     ---------->ID1                <---------ICU4                <--------ATHB1                -------->ATHB1                --------->ATHB12               --------->ICU4               <---------YAB1                                                             --------->ANAC58               <---------ATHB51                                                           --------->ANAC58             --------->WOX13(1)                                                       --------->At4g35610          --------->ANAC58  <---------AHL20(2)    <---------bZIP60(1)                 <---------At4g35610          --------->ANAC58  --------->AHL20(2)    --------->bZIP60(1)           =====================        ---------->DOF2     --------->YAB1       ----------->STF1               ---------->DOF2  --------->DAG2--------->ATHB51                <---------TGA2(2)        <---------ARR11(3)  <------- --------->DOF2<---------ATHB12     <---------AHL20(2)                   --------->AHL20(1) --------- ------------>AG--------->YAB1---------->DOF2  ----------->HVH21         <---------AHL20(1) <-------- ------------>AGL1<---------YAB1----------->GT1----------->TGA1    ----------->RAV1(1)--------->ZAT2<   ctaaaaggtcgaaagcaattattgtcgtaataaaaagtttaattcatcgatgacgttattgtattgagacaacaaaatatttgaaagcagctaagcatca  29449200         <-------MYC2         ------->MYC3         <-------MYC3         ------->MYC2         <-------PIF5         ------->PIF5         ------->MYC4         <-------MYC4        --------->TGA1a        <---------TGA1a        <---------O2                         <---------GLK1(1)        <---------PIF3(3)                    --------->GLK1(1) =================bZIP_DOF                  <---------ARR14(2) ----HVH21--------->ALFIN1                  --------->ARR14(2)          --------->At4g35610 >YAB1  --------->PIF3(3)               <---------LBD16              <---------At5g28300 -ICU4  --------->O2                 <---------GLK1(1)    --------------->AGL15     <----------DOF2 ------ZmHOX2a(1)             --------->ATHB12         <-----------GT1  <---------At4g35610------>ZmHOX2a(1)   caggaagtccacgtggaagaagttgagacagttcattggaatttcggatttcccaattttcttcttacagttacagctctctctctctttctcctctcta  29449300                                    ------>ZmHOX2a(1)                                  <---------ANAC58                                  ----------->RAV1(2)                                  <---------ANAC58                                <---------ARR14(2)                              ------->MYC3                             --------->TGA1a                             <---------TGA1a                             ============================bZIP_DOF                             ============================bZIP_DOF           ============================MYC_MYB         <---------ANAC58           ------->GAMYB     <---------O2          <----------DOF2          =============================MYC_MYB    <---------ANAC58          <<<<<<<<<TAC1      --------->O2     <----------DOF2         <---------ANAC58          <------------AtMYB77<-------MYC3 <---------ALFIN1---------->ID1         --------->YAB1   <---------ANAC58   =================bZIP_DOF   <---------ANAC58    <---------ANAC58   <---------ANAC58   <----------DOF2    <------NtERF2 <---------ANAC58     --------->TOE2(3)    ----   aacttgcttccaactgtctcttctctttgccacgtttcctggcccctactttgctttacttgtctccatatttcgttttcttaatcaaactaaaaactat  29449400  Previous    Next  AGI:  At1g78250.1    Description:  pre-tRNA. tRNA-Met (anticodon: CAT) Range:  from: 29448866    to: 29448903    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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