Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      ------>ZmHOX2a(2)                                                                   <------ZmHOX2a(2)                                                                  --------->ARR11(3)                                                                  --------->AGP1                                                                  <---------ARR11(3)                                                      --------->WRKY12                                                      --------->WRKY38(1)                 --------->ARR14(2)                   ----------->HVH21                 <---------ARR14(2)           <---------ANAC58    --------->ARR14(2)                 --------->GLK1(2)            <---------ANAC58    <---------ARR14(2)                 ------->TEIL                --------->ATHB12    <---------GLK1(1)        --------->ZAT2                =====================================HOX2a_HOX2a        <---------At4g35610           ====================================HOX2a_HOX2a        --------->At4g35610           ------>ZmHOX2a(1)          --------->GLK1(1)        --------->ZAT14      <-----------GT1<---------YAB1   --------->HSFB2a(2)  <-----------HVH21      <----------DOF2  <---------ICU4    <---------LBD16 -------->DOF2  <---------GLK1(2) <---------ARR14(2)  --------->WRKY45     <---------YAB1       <---- ---AHL20(2)----------->RAV1(2)   --------->ARR14(2)<----------DOF2--------->CCA1(2)--------->MYB46(3)   tcaaagtcagagcagcctgaatctgagcttttctcagttcctcatcatgcttggctttgacctctggagatctaattcttattgcaacaatcttcttgta  29421400                                                                  <---------ANAC58                                                                  <---------ANAC58                                                             <---------ANAC58                            --------->At4g35610       --------->GLK1(2)              <---------WOX13(1)                  <-------GAMYB             <---------TOE1(2)<---------ANAC58      --------->ATHB12             ------>ZmHOX2a(1)       <----------TaMYB80     --------->ZAT2        <---------YAB1        --------->KAN4(2)<---------YAB1    ------>ZmHOX2a(1)<---------ZAT2  <---------YAB1          - -------GT1  ----------->HVH21    <------NtERF2      <---------GLK1(2)  <---------GLK1(2) <----------DOF2   acatcatgctcattcctgactgttgttatcagaggcctcatattcctaggcttcatattctgagcttggcttcagtttctcattgtgattggctttgtgc  29421500                                                  ------->TEIL                                            --------->ARR14(2)                                     --------->ARR11(3)                <--------HAHB4                   --------->DAG2    <---------ARR11(3)                --------->YAB1                  --------->DAG2    --------->GLK1(1)                 <---------ATHB12            ---------->DOF2         <---------GLK1(1)       --------->At4g35610        --------->ANAC58            <---------RVE1(1)    --------->At4g35610              --------->TOE2(3)        --------->ANAC46           <---------ARR11(3)    <---------At4g35610            --------->ARR11(3)        <----------ID1     <---------YAB1   <---------ARR14(2)        <---------YAB1    <---------ARR11(3)        --------->ANAC58 <----------DOF2   <---------CCA1(2)<---------At4g35610   ----------->GT1 --------->DOF2  ---------->DOF2   --------->ARR11(3)   <-----------RAV1(1)      ----------->GT1   tacaaagaaaacgccaaagaaaagggactttgattcagatatctcatatctgcatcttctgctgctaaacctataattaagaggggttaaaatcttagaa  29421600                                                          <----------DOF2                                                --------->YAB1                                                --------->ATHB51                                                <--------ATHB1      <----------DOF2                                                <---------ICU4<---------ANAC58                                                --------->AHL20(2) --------->TOE2(3)                                  ------>ZmHOX2a(1)      <---------ANAC58<---------DAG2      <-------                                  <----------DOF2        <---------ANAC58<----------DOF2    ---------                              <-----------GT1  <---------ATHB51    --------->TOE1(3)       <---------AHL20(2)                             <---------CCA1(2) <---------ATHB12------>ZmHOX2a(1)       <---------GLK1(2)                    ------>ZmHOX2a(1)     --------->GLK1(2)   <---------ANAC58    ----------->RAV1(1)   aactccatctaacatatagttcctcagcattatatccttttcagaatcaataatttcatgctttccttacctttacttttggagccacagaatttaaagt  29421700                                 --------->ANAC58                                 --------->ANAC46                                 --------->ANAC58                              <---------MYB55(2)                              --------->MYB46(3)                              <---------ATHB12                             ------>MYB83                             ------>MYB46(1)   <---------GLK1(2)                   <---------ALFIN1            <---------ARR14(2)                --------->ARR14(2)------------>CBF                <---------ARR14(2)<---------ATHB12 ---------->DOF2<---------TCP20--------->AtMYB61               <----------DOF2                 <----- --TOE2(3) --------->MYB52(1)-------->P        --------->ARR14(2)                 ------------>CBF ->DOF2  ---------->DOF2<-----------HVH21   <---------------------WRI1            <---------ATHB12---   ataaaaagcccaaaaacggttccaccggtccaaccactcaattttggccgattcccacaaattagcttttctctacaaattcaaatcaattttgctcctt  29421800                                        ------>ZmHOX2a(1)                                      --------->HSFB2a(1)                                      --------->HSFC1(2)                                      <---------HSFC1(2)                                     <------ZmHOX2a(2)                                    <---------ARR11(3)                                    --------->ARR14(2)                       --------->ARR11(3)      <<<<<<<<<TBF1                       <---------ARR11(3)   <<<<<<<<<TBF1     <----------DOF2                --------               <------ZmHOX2a(1)    <---------ARR14(2)       --------->AGP1          <----------DOF2<      *TSS     =============================HOX2a_HOX2a     --------->ZAT2        ------->TEIL<------ -----DOF2<-----------HVH21    =============HOX2a_HOX2a     --------->At4g35610<---------ATHB12    <- ------>YAB1 >>>>>>>GRF7       ------>ZmHOX2a(1)  <<<<<<<<<TBF1   <---------------------WRI1 <-------   tcattatccaaatgtcaggactcgatatctatcctcacgatccttcttcttcttcttcgaccagctctatcgatctatccaatgaagctttcttcagcac  29421900                           <---------ARR14(2)                           --------->ARR14(2)                                                --------                        <---------ANAC58                                                    <--------           <---------HSFB2a(2)                                                             --------->LBD16           <---------HSFC1(1)                                                             --------->LBD16           --------->HSFC1(1)                                                            --------->LBD16 <---------MYB46(3)     <---------ANAC58                                                 <---------LBD16 ->At4g35610    <---------MYB55(2)                                                      <---------LBD16 ---------AtMYB61   <-----------RAV1(2)                                              <---------ARR14(2) ---ALFIN1 --------->HSFB2a(2) ------>ZmHOX2a(1)                   ------>NtERF2     --------->ARR14(2) --------MYB52(1)--------->AtMYB61                                --------->DEAR3(1)<---------GLK1(1) --At4g35610    --------->MYB46(3)                     ------>ZmHOX2a(1)     <---------ALFIN1<-------   cggtggtctgtttctcgaaccaccaggcgtttcctcttccttcttcgactctatctcctccaaatgctccgactcagagccactgcatttccccggttac  29422000                                                                          <---------At4g35610                                                                      ------>ZmHOX2a(2)                                                                     --------->CCA1(2)                                                                     <------ZmHOX2a(2)                                                                    <-----------ARR10                                                                    <---------ARR14(2)                         <---------MYB52(1)    <---------ANAC58     --------->ARR14(2)                        --------->LBD16     <-----------HVH21       <---------ARR11(3)                      <---------LBD16      ==================================HOX2a_HOX2a                   <---------At4g35610     ------>ZmHOX2a(1)---------->DOF2                   --------->At4g35610     =================================HOX2a_HOX2a               <---------ARR14(2)<----------DOF2    --------->At4g35610   --------->At4g35610      <- ->ARR14(2)    --------->ARR14(2)<---------DAG2<---------ANAC58     --------->AGP1               <--- ---HVH21    <-----------HVH21<---------ARR11(3) <---------MYB52(1) <---------AGP1              ----- --ARR14(2) --------->ANAC46  --------->ARR11(3)--------->LBD16     --------->ARR11(3)      <--------   tggagaaacaaaacccgtctccgctccggtaagaactttatgttcctgtccgtgagcttgagtaaagacagatctgagcagcaatgtaagaaggctttgg  29422100                                                              <---------TGA1a                                                              <---------O2                                                             --------->ATERF1(1)                                                           --------->ARR14(2)                                                           <---------ARR14(2)                                                           ----------->HVH21                                                          <------ZmHOX2a(1)                                                    <---------ANAC55(1)                                                    <---------TGA1a                                                    <---------ANAC58                                                    --------->O2                       --------->YAB1               <---------O2                      ----------->GT1               <---------ANAC46                              <--                     --------->ANAC58               ====================bZIP_bZIP                 <--                     --------->ANAC58               <---------bZIP60(1)                           <--                 --------->ANAC46                   --------->TGA1a<---------PCF2    <---------HSFB2a(1)                 --------->LBD16                    <---------ANAC58                 <---------HSFC1(2)                 ------>NtERF2                      --------->bZIP60(1)              --------->HSFC1(2)                <---------LBD16                    <------NtERF2  ----------->HVH21 --------->ANAC58    <----------ID1<------NtERF2                    <-----------------------TaNAC69(2)--------->HSFB2a(1) -----NtERF2    --------->ANAC46                  ------>NtERF2<---------LBD16  --------->ANAC58 <--- ------ANAC46   <---------ETT(1)                 --------->ALFIN1--------->LBD16--------->ANAC58 ---- ----->ID1      --------->LBD16                  <---------DEAR3(1)<---------PCF5   --------->ANAC58 --DOF2        <---------LBD16          <---------ZAT6--------->ALFIN1          --------->ANAC46 <---   cgcaaaacgacgaaattcccggcaaggataatcgaaaacgaagtgttatcggtggcgtgaggagacgcgggaccatgaacacaaggaagcatctctgggc  29422200       <---------At4g35610       --------->At4g35610       <---------ZAT2       --------->ZAT2                         <---------ZAT18   <---------REM1(1)                      --------->YAB1 ----MYB46(1)                     --------->ATHB12 -------At4g35610                <---------AHL20(2) ----MYB83------>NtERF2          <---------YAB1                                          <---------ARR11(3) ------DEAR3(1)               <---------AHL20(1)                                       --------->ICU4 ----->ALFIN1                 --------->AHL20(1)                                       <---------YAB1 ------MYB46(3)              <---------AHL20(2)       <-----------GT1   ----------->RAV1(2)   tggtgctgtagctgccatggtttcaaagtatatatattattgaatcagagcgcatataacttgtttgatgaaatgcctgaaccaaaaccatgattttttg  29422300  Previous    Next  AGI:  At1g78180.1    Description:  binding. similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G64970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61721.1); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067) Range:  from: 29421806    to: 29423533    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version