Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            --------->AHL20(2)                                        --------->TOE2(3)                               <------MYB83<---------AHL20(2)                               <------MYB46(1)                              --------->MYB46(2)                              --------->MYB59 <---------ICU4       <---------ANAC46       --------->MYB111(1)      <---------TOE2(3)  --------->DAG2--------->YAB1                    ----------->GT1         ---- -----ID1               ---------->DOF2<--------HAHB4 <-------MYC3      --------->ALFIN1        ----- --DOF5.7(2)       ---------->DOF2    <---------YAB1  ------->MYC3      ----------->GT1         <----   acaagttttaggtggattaaaaaaagaaaagttaggttgtatcattaaatattccatatgcatcattttaagaggtgtttaaaattttaaacacaaattt  29368700                     <---------AHL20(2)                     --------->AHL20(2)                    --------->AHL20(2)           <---------CCA1(1)           <---------RVE1(1)                              --------->AHL20(2)          <---------ARR11(3)                              <---------AHL20(2)        --------->ANAC46                              <---------AHL20(2)                            -        --------->ANAC58  <-----------GT1  --------->ANAC58                                  --------        --------->ANAC58 --------->AHL20(2)--------->ANAC58                               --------->YAB1 ------>DOF2     <---------AHL20(2)        --------->ANAC46                              <---------YAB1 ---->AHL20(2)  <---------YAB1  --------->AHL20(2)    --------->AHL20(1)              --------->AHL20(1) -----AHL20(2) <---------AHL20(2)<---------AHL20(2)   --------->AHL20(2)        --------->YAB1     <-   aaagaaaaacacgatatttttatttaatttactattttatataaaacgccagaaaataaaataaatacaagtattcaactaataaaaacatattataaaa  29368800                                                                                          <--------HAHB4                                                                                          <---------ICU4                                                                                         <---------YAB1                                                                                        <-----------GT1                                                                                   <--------HAHB4                                                                                   <---------ICU4                                                                                   --------->ATHB12                                                                                  <---------YAB1               ----------->GT1------>ZmHOX2a(2)                             <---------TOE2(3)        ----------->GT1       =====================================HOX2a_HOX2a    <---------ATHB12     <-----------HVH21       <------ZmHOX2a(2)                              <---------TOE1(3)    <------MYB46(1)--------->DAG2                                        --------->ICU4--------->YAB1    <------MYB83  <---------ZAT14                           <------ZmHOX2a(1)     --------->ICU4  <---------WOX13(1)    ---------->DOF2                   <---------TOE2(3) <---------YAB1--------->YAB1 -------->ATHB12  ---------->DOF2          <---------ANAC55(2)        --------------->AGL15 ->AHL20(2)   --------->DAG2--------->ARR11(3)       --------->ICU4   <---------------AGL15    <----- --------YAB1---------->DOF2<---------ARR11(3)---------->DOF2  --------->ICU4--------->YAB1    ------   tatgattggtcagaaaaaagtaaagtgaaagatcgctaaaacatcacttaaagtaattctgaggaagtattagtatttatggtaatcatttatcattaca  29368900                                     --------->ZAT6                             <---------AHL20(2)                           <---------YAB1                        --------->DAG2                          <---------AHL20(2)              <---------ZAT6 <---------At5g28300     <---      <-----------GT1     <---------AHL20(1)            <---------At5g28300       <---------ANAC58 <---------AHL20(2)     <---------AHL20(2)             <-----------GT1  <-----------GT1          ---- ----ANAC55(2)          <---------YAB1      <---------ZAT14     ---------->DOF2   <---------ANAC58 --->ANAC55(2)         <---------AHL20(1)   --------->ZAT14  <<<<<<<<<WRKY18      <---------ANAC46   tattttttttactaacacagtctaatattattttttctaacactactacagttttatttactgtcaaaaagtttttaccatcttgtgtgtcatcaaacaa  29369000                                                       ----------->GT1                             --                                                 --------->ARR11(3)                                <-                                                 <---------ARR11(3)                               ---                                          ----------->GT1                                         ---          --------->ANAC55(2)            --------->ANAC58                 <---------YAB1        <----         --------->MYB59                 --------->ANAC58         --------->LBD16               -----         <---------TOE2(3)               ----------->GT1          ----------->GT1              <-----       <---------MYB52(1)              --------->MYB52(1)       <---------LBD16                ------ --------ARR10            <---------AHL20(2)    --------->CCA1(1)--------->LBD16         <------ZmHOX2a(1) ----->ARR14(2)          --------->AHL20(2)     --------->RVE1(1)--------->ANAC46  <---------ZAT6 ---   atctactcgcttaggtattttgaaatataaaattgcctaagaaacggaaaatatcgttggaaaaaacccggaaaatatgaaaatagtgtgaggagactac  29369100       <---------AHL20(2)        --------->MYB52(2)     ----------->TBP           <--------P                                                    ------>NtERF2 ------>MYB46(1)               <---------MYB52(1)                                   xxxxxxxxxxxxxxxxx ------>MYB83                ----------->GT1                                     <---------AHL20(2) ------->MYB46(3)         --------->ALFIN1                             --------->ANAC46      <------- --------MYB55(2)       <---------At4g35610                            --------->ANAC58<---------ANAC58 ------>ANAC58          --------->At4g35610                            --------->ANAC58<---------ANAC58 ------>ANAC46          --------->ZAT2                          <---------ZAT14  --------->AHL20(2) -----ALFIN1          <-----------RAV1(2)                       <---------REM1(2)--------->AHL20(1) ---->REM1(1)        <---------ZAT2                             --------->ZAT14  <---------AHL20(1) ----ZAT14          --------->ANAC58         <---------AtMYB61<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ---- --->ZAT14          --------->AtLEC2       <---------MYB52(1) --------->ANAC46  --------->AHL20(2) ------>ANAC58      --------->ANAC58      *TSS              <-----------GT1     <---------AHL20(2)   acccactatataaacaagagccaagcaggtgaggttagttcatcggtgaggttgagagtaattcactacacacacacaaaaaataaattgagtgcctccc  29369200                                                          <-----------GT1                                                       <---------ICU4                                                  ------>ZmHOX2a(1)                      --------->ANAC58            --------->LBD16 xxx>smallRNA(le3)    --------->ANAC58          ------>ZmHOX2a(2)                           <-------- --ATERF1(1)      --------->MYB52(1)     <---------ARR14(2)             <-----------GT1   <---------- ----->LBD16 <--------P                  --------->ARR14(2)     <---------AHL20(2)     --------->GLK1(2)   ccaaaaacaaaattggtagataacgagcaattgttttttttcagatttgatcctgaatttttacatttttttttttgcaatctccccctaatctgttgtt  29369300                           <----------DOF2                     <---------At4g35610      ----------->GT1                   --------->YAB1             <----------ID1                  <---------ATHB12     ----------->GT1       <<<<<<<<<TBF1 --------->At4g35610    ---------->DOF2 -MYB52(1)      --------->WOX13(1)   ---------->DOF2         <---------LBD16 -RAV1(1)     <---------MYB52(1) ---------->DOF2          <---------GLK1(1)       ----------->GT1   <   tctcgcttcttcttctgttaatcatctgtctttcaaaaagaaagaaaaaagaaaaattcgatttctgggtttgtttttgtcatacagaaaaaaatcaagc  29369400                                                                <-----------GT1                                                          ------>ZmHOX2a(2)                                                         <------ZmHOX2a(2)                         <---------AHL20(2)    <---------HSFB2a(2)            --------->AHL20(2)               <-----------GT1<---------MYB52(1)           <----------DOF2            <---------AHL20(2)  ---------->DOF2--------->HSFB2a(2)                 <-----------GT1   ------->TEIL <---------AHL20(2)     <------MYB46(1)  --------->ARR11(3)   <---------YAB1 ---------YAB1  --------->AHL20(2)     <------MYB83     <---------ARR11(3) <---------At4g35610<------   ttatgaatttgtgtttaattttttgttttaatttgaaaggcaggttttttcagaacgagatcgttttttcaaatttcttctgattttacctctttttttc  29369500                                                                <---------ANAC58                                                    <---------REM1(2)                                                 <------ZmHOX2a(2)                                                 --------->GLK1(1)                                                <-----------ARR10                                                --------->ARR11(3)                                                --------->AGP1  <---------ANAC58                                                --------->ARR14(2)                              <----                                                <---------ARR14(2)                        <---------AHL20(2)                    ----------->GT1         <---------LBD16  <--------P              <-------TEIL    --------->ARR11(3)                   <----------DOF2   <---------MYB46(3)       <------ZmHOX2a(2)    <---------ARR11(3)         <---------YAB1  <---------CCA1(2)<---------ANAC46   --------->AGP1 -----GT1           <XXXXXXXXXXXXXXXXXXXXMIR1886.3------>ZmHOX2a(2)          <----------DOF2    -----   ttcttagattttagtgaatcgagggtgaaatttttgattccctcttttcggatctacacagaggttgcttatttcaaaccttttagatccattttttttt  29369600  Previous    Next  AGI:  At1g78080.1    Description:  RAP2.4 (related to AP2 4); DNA binding / transcription factor. Identical to Ethylene-responsive transcription factor RELATED TO APETALA2 4 (RAP2-4) [Arabidopsis Thaliana] (GB:Q8H1E4;GB:O23106;GB:Q94K95;GB:Q9C9S5;GB:Q9SGZ3); similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G22190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61739.1); similar to putative AP2-binding protein [Jatropha curcas] (GB:AAZ14831.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Pathogenesis-related transcriptional factor and ERF, DNA-binding; (InterP Range:  from: 29369142    to: 29370966    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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